8PTK: Composite structure of Dynein-Dynactin-JIP3-LIS1
Composite structure of Dynein-Dynactin-JIP3-LIS1. Determined by electron microscopy at 10.0 Å resolution. Released 27 Mar 2024.
- Method
- Electron microscopy
- Resolution
- 10.0 Å
- Organisms
- Homo sapiens, Sus scrofa
- Chains
- 53
- Atoms
- 161,538
- Mol. weight
- 4180.97 kDa
- Ligands
- ANP, MG, ZN, ATP
- Released
- 27 Mar 2024
Explore 8PTK in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8PTK contains 1,365 α-helices and 1,056 β-strands across 53 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 1: 7 helices, 32 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-21 | 17 | |
| α-helix | 25-34 | 10 | |
| α-helix | 50-56 | 7 | |
| α-helix | 58-79 | 22 | |
| α-helix | 91-93 | 3 | |
| β-strand | 96 | 1 | 1 |
| β-strand | 102-105 | 4 | 2 |
| β-strand | 111-116 | 6 | 3 |
| β-strand | 123-127 | 5 | 3 |
| β-strand | 132-135 | 4 | 3 |
| β-strand | 142-146 | 5 | 3 |
| β-strand | 153-158 | 6 | 4 |
| β-strand | 164-169 | 6 | 4 |
| β-strand | 173-178 | 6 | 4 |
| β-strand | 183-189 | 7 | 4 |
| β-strand | 195 | 1 | 5 |
| β-strand | 199-200 | 2 | 6 |
| β-strand | 206-210 | 5 | 6 |
| β-strand | 211 | 1 | 5 |
| β-strand | 215-220 | 6 | 6 |
| β-strand | 226-231 | 6 | 6 |
| β-strand | 237-242 | 6 | 7 |
| β-strand | 248-253 | 6 | 7 |
| β-strand | 258-262 | 5 | 7 |
| β-strand | 268-272 | 5 | 7 |
| β-strand | 281-284 | 4 | 8 |
| α-helix | 285-286 | 2 | |
| α-helix | 287-296 | 10 | |
| β-strand | 310-314 | 5 | 8 |
| β-strand | 319-324 | 6 | 8 |
| β-strand | 329-335 | 7 | 8 |
| β-strand | 341-346 | 6 | 9 |
| β-strand | 352-357 | 6 | 9 |
| β-strand | 362-366 | 5 | 9 |
| β-strand | 371-376 | 6 | 9 |
| β-strand | 383-388 | 6 | 2 |
| β-strand | 394-399 | 6 | 2 |
| β-strand | 403-408 | 6 | 2 |
| β-strand | 409 | 1 | 1 |
Chain 2: 8 helices, 30 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-20 | 16 | |
| α-helix | 25-35 | 11 | |
| α-helix | 41-44 | 4 | |
| α-helix | 50-79 | 30 | |
| α-helix | 91-93 | 3 | |
| β-strand | 96 | 1 | 12 |
| β-strand | 102-105 | 4 | 13 |
| β-strand | 111-116 | 6 | 14 |
| β-strand | 123-127 | 5 | 14 |
| β-strand | 132-136 | 5 | 14 |
| β-strand | 141-146 | 6 | 14 |
| β-strand | 155-158 | 4 | 15 |
| β-strand | 164-168 | 5 | 15 |
| β-strand | 174-178 | 5 | 15 |
| β-strand | 184-188 | 5 | 15 |
| β-strand | 195-200 | 6 | 16 |
| β-strand | 206-211 | 6 | 16 |
| β-strand | 215-220 | 6 | 16 |
| β-strand | 226-231 | 6 | 16 |
| β-strand | 237-242 | 6 | 17 |
| β-strand | 248-253 | 6 | 17 |
| β-strand | 258-262 | 5 | 17 |
| β-strand | 268-272 | 5 | 17 |
| β-strand | 279-284 | 6 | 18 |
| α-helix | 285-286 | 2 | |
| α-helix | 287-289 | 3 | |
| α-helix | 290-297 | 8 | |
| β-strand | 310-315 | 6 | 18 |
| β-strand | 319-324 | 6 | 18 |
| β-strand | 329-335 | 7 | 18 |
| β-strand | 341-346 | 6 | 19 |
| β-strand | 352-357 | 6 | 19 |
| β-strand | 361-366 | 6 | 19 |
| β-strand | 371-377 | 7 | 19 |
| β-strand | 383-388 | 6 | 13 |
| β-strand | 394-399 | 6 | 13 |
| β-strand | 403-408 | 6 | 13 |
| β-strand | 409 | 1 | 12 |
Chain 3: 3 helices, 32 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 91-93 | 3 | |
| β-strand | 96 | 1 | 28 |
| β-strand | 102-105 | 4 | 29 |
| β-strand | 111-116 | 6 | 30 |
| β-strand | 123-127 | 5 | 30 |
| β-strand | 132-135 | 4 | 30 |
| β-strand | 142-146 | 5 | 30 |
| β-strand | 153-158 | 6 | 31 |
| β-strand | 164-169 | 6 | 31 |
| β-strand | 173-178 | 6 | 31 |
| β-strand | 183-189 | 7 | 31 |
| β-strand | 195 | 1 | 32 |
| β-strand | 199-200 | 2 | 33 |
| β-strand | 206-210 | 5 | 33 |
| β-strand | 211 | 1 | 32 |
| β-strand | 215-220 | 6 | 33 |
| β-strand | 226-231 | 6 | 33 |
| β-strand | 237-242 | 6 | 34 |
| β-strand | 248-253 | 6 | 34 |
| β-strand | 258-262 | 5 | 34 |
| β-strand | 268-272 | 5 | 34 |
| β-strand | 279-284 | 6 | 35 |
| α-helix | 285-286 | 2 | |
| α-helix | 288-296 | 9 | |
| β-strand | 310-315 | 6 | 35 |
| β-strand | 319-324 | 6 | 35 |
| β-strand | 329-335 | 7 | 35 |
| β-strand | 341-346 | 6 | 36 |
| β-strand | 352-357 | 6 | 36 |
| β-strand | 362-366 | 5 | 36 |
| β-strand | 371-376 | 6 | 36 |
| β-strand | 383-388 | 6 | 29 |
| β-strand | 394-399 | 6 | 29 |
| β-strand | 403-408 | 6 | 29 |
| β-strand | 409 | 1 | 28 |
Chain 4: 3 helices, 30 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 91-93 | 3 | |
| β-strand | 96 | 1 | 38 |
| β-strand | 102-105 | 4 | 39 |
| β-strand | 111-116 | 6 | 40 |
| β-strand | 123-127 | 5 | 40 |
| β-strand | 132-135 | 4 | 40 |
| β-strand | 142-146 | 5 | 40 |
| β-strand | 155-158 | 4 | 41 |
| β-strand | 164-168 | 5 | 41 |
| β-strand | 173-178 | 6 | 41 |
| β-strand | 184-189 | 6 | 41 |
| β-strand | 195-200 | 6 | 42 |
| β-strand | 206-211 | 6 | 42 |
| β-strand | 215-220 | 6 | 42 |
| β-strand | 226-231 | 6 | 42 |
| β-strand | 237-242 | 6 | 43 |
| β-strand | 248-253 | 6 | 43 |
| β-strand | 258-262 | 5 | 43 |
| β-strand | 268-272 | 5 | 43 |
| β-strand | 279-284 | 6 | 44 |
| α-helix | 285-286 | 2 | |
| α-helix | 290-297 | 8 | |
| β-strand | 310-315 | 6 | 44 |
| β-strand | 319-324 | 6 | 44 |
| β-strand | 329-335 | 7 | 44 |
| β-strand | 341-346 | 6 | 45 |
| β-strand | 352-357 | 6 | 45 |
| β-strand | 361-366 | 6 | 45 |
| β-strand | 371-377 | 7 | 45 |
| β-strand | 383-388 | 6 | 39 |
| β-strand | 394-399 | 6 | 39 |
| β-strand | 403-408 | 6 | 39 |
| β-strand | 409 | 1 | 38 |
Chain a: 2 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-12 | 6 | 37 |
| α-helix | 15-31 | 17 | |
| α-helix | 35-49 | 15 | |
| β-strand | 54-68 | 15 | 37 |
| β-strand | 73-78 | 6 | 37 |
| β-strand | 81-87 | 7 | 37 |
Chain A: 21 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-15 | 4 | 46 |
| β-strand | 20-21 | 2 | 47 |
| β-strand | 22-25 | 4 | 46 |
| β-strand | 35-36 | 2 | 47 |
| β-strand | 39-42 | 4 | 48 |
| β-strand | 45-46 | 2 | 49 |
| β-strand | 57 | 1 | 48 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 48 |
| β-strand | 75-76 | 2 | 50 |
| β-strand | 79-80 | 2 | 50 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-112 | 5 | 46 |
| α-helix | 118-126 | 9 | |
| α-helix | 127-131 | 5 | |
| β-strand | 137-141 | 5 | 46 |
| α-helix | 142-149 | 8 | |
| β-strand | 155-160 | 6 | 51 |
| β-strand | 165-171 | 7 | 51 |
| β-strand | 174-175 | 2 | 51 |
| α-helix | 176 | 1 | |
| β-strand | 181-183 | 3 | 51 |
| α-helix | 187-200 | 14 | |
| α-helix | 211-220 | 10 | |
| β-strand | 223 | 1 | 52 |
| α-helix | 228-232 | 5 | |
| α-helix | 235-237 | 3 | |
| β-strand | 240-242 | 3 | 53 |
| β-strand | 248-250 | 3 | 53 |
| α-helix | 254-257 | 4 | |
| α-helix | 258-261 | 4 | |
| α-helix | 275-284 | 10 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 51 |
| β-strand | 308 | 1 | 52 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 330-331 | 2 | 51 |
| α-helix | 339-348 | 10 | |
| α-helix | 352-354 | 3 | |
| β-strand | 358 | 1 | 46 |
| α-helix | 360-365 | 6 | |
| α-helix | 368-374 | 7 | |
Chain b: 2 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 6-12 | 7 | 37 |
| α-helix | 15-31 | 17 | |
| α-helix | 35-49 | 15 | |
| β-strand | 54-68 | 15 | 37 |
| β-strand | 73-78 | 6 | 37 |
| β-strand | 81-87 | 7 | 37 |
Chain B: 20 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-16 | 5 | 56 |
| β-strand | 20-25 | 6 | 56 |
| β-strand | 33-36 | 4 | 56 |
| β-strand | 39-42 | 4 | 57 |
| β-strand | 45-46 | 2 | 58 |
| β-strand | 57 | 1 | 57 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 57 |
| β-strand | 75-76 | 2 | 59 |
| β-strand | 79-80 | 2 | 59 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-112 | 5 | 56 |
| α-helix | 118-126 | 9 | |
| α-helix | 127-131 | 5 | |
| β-strand | 136-141 | 6 | 56 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 60 |
| β-strand | 165-171 | 7 | 60 |
| β-strand | 174-175 | 2 | 60 |
| β-strand | 181-183 | 3 | 60 |
| α-helix | 187-199 | 13 | |
| α-helix | 208-220 | 13 | |
| β-strand | 223 | 1 | 61 |
| α-helix | 228-233 | 6 | |
| α-helix | 235-236 | 2 | |
| β-strand | 240-242 | 3 | 62 |
| β-strand | 248-250 | 3 | 62 |
| α-helix | 254-257 | 4 | |
| α-helix | 258-261 | 4 | |
| α-helix | 265-268 | 4 | |
| α-helix | 275-284 | 10 | |
| α-helix | 288-295 | 8 | |
| β-strand | 298-301 | 4 | 60 |
| β-strand | 308 | 1 | 61 |
| α-helix | 310-321 | 12 | |
| β-strand | 329-331 | 3 | 60 |
| α-helix | 339-348 | 10 | |
| α-helix | 353-355 | 3 | |
| β-strand | 358-359 | 2 | 56 |
| α-helix | 360-365 | 6 | |
| α-helix | 368-374 | 7 | |
45 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Platelet-activating factor acetylhydrolase IB subunit beta | 1, 2, 3, 4 | protein | 410 | Homo sapiens | P43034 (AlphaFold model) |
| ARP1 actin related protein 1 homolog A | A, B, C, D, E, F, G, I | protein | 376 | Sus scrofa | F2Z5G5 (AlphaFold model) |
| Actin, cytoplasmic 1 | H | protein | 375 | Sus scrofa | Q6QAQ1 (AlphaFold model) |
| Arp11 | J | protein | 417 | Sus scrofa | I3LHK5 (AlphaFold model) |
| Capping protein (Actin filament) muscle Z-line, alpha 1 | K | protein | 286 | Sus scrofa | A0PFK5 |
| F-actin-capping protein subunit beta | L | protein | 272 | Sus scrofa | A0PFK7 |
| Dynactin subunit 2 | M, N, P, Q | protein | 405 | Sus scrofa | A0A5G2QD80 |
| Dynactin subunit 3 | O, R | protein | 186 | Sus scrofa | F1SEC0 |
| Dynactin subunit 1 | S, T | protein | 1281 | Sus scrofa | A0A287B8J2 |
| Dynactin 6 | U | protein | 190 | Sus scrofa | D0G6S1 |
| Dynactin subunit 5 | W | protein | 182 | Sus scrofa | A0A286ZK88 |
| C-Jun-amino-terminal kinase-interacting protein 3 | X, x | protein | 581 | Homo sapiens | Q9UPT6 |
7 more molecules are not listed.
Sequence of entity 1 (1, 2, 3, 4), FASTA
>8PTK_1 Platelet-activating factor acetylhydrolase IB subunit beta (chains 1, 2, 3, 4)
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE
TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK
TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
Sequence of entity 2 (A, B, C, D, E, F, G, I), FASTA
>8PTK_2 ARP1 actin related protein 1 homolog A (chains A, B, C, D, E, F, G, I)
MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL
SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK
KEYEEDGARSIHRKTF
Sequence of entity 3 (H), FASTA
>8PTK_3 Actin, cytoplasmic 1 (chains H)
MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
EYDESGPSIVHRKCF
Sequence of entity 4 (J), FASTA
>8PTK_4 Arp11 (chains J)
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP
SPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPIDTRKQLA
ENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKTFRIHTPPAKANCVAWLGGAI
FGALQDILGSRSVSKEYYNQTGRIPDWCSLNNPPLEMVFDVGKSQPPLMKRAFSTEK
Sequence of entity 5 (K), FASTA
>8PTK_5 Capping protein (Actin filament) muscle Z-line, alpha 1 (chains K)
MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD
QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSW
RESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT
ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQ
TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA
Sequence of entity 6 (L), FASTA
>8PTK_6 F-actin-capping protein subunit beta (chains L)
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sequence of entity 7 (M, N, P, Q), FASTA
>8PTK_7 Dynactin subunit 2 (chains M, N, P, Q)
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK
DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
KIKMTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL
LQLEATKNTKGAGSGGKTTSGSPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA
TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH
KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT
QQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK
Sequence of entity 8 (O, R), FASTA
>8PTK_8 Dynactin subunit 3 (chains O, R)
MAGVTDVQRLQARLEELERWVYGPGGSRGSRKVADGLVKVQVALGNIASKRERVKILYKK
IEDLIKYLDPEYMDRIAIPDASKLQFILAEEQFILSQVALLEQVEALVPMLDSAHIKAVP
EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAAKQ
VKPAEE
Sequence of entity 9 (S, T), FASTA
>8PTK_9 Dynactin subunit 1 (chains S, T)
MAQSKRHVYSRTPSGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV
ILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSPETPDSSASKVLRRE
GTDSNAKTSKLRGPKPKKAPTARKTTTRRPKPTRPASTGVAGASSSLGPSGSASAGELSS
SEPSTPAQTPLAAPIIPTPALTSPGAAPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAE
DKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADT
ADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQL
KQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAE
STIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARE
TELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEA
SVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDSFLRPG
GDHDCVLVLLLMPRLICKAELIRKQAQEKFDLSENCSERPGLRGAAGEQLSFAAGLVYSL
SLLQATLHRYEHALSQCSVDVYKKVGSLYPEMSAHERSLDFLIELLHKDQLDETVNVEPL
TKAIKYYQHLYSIHLAEQPEDSTMQLADHIKFTQSALDCMSVEVGRLRAFLQGGQEASDI
ALLLRDLETSCSDIRQFCKKIRRRMPGTDAPGIPAALAFGAQVSDTLLDCRKHLTWVVAV
LQEVAAAAAQLIAPLAENEGLPVAALEELAFKASEQIYGTPSSSPYECLRQSCNILISTM
NKLATAMQEGEYDAERPPSKPPPVELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLK
IKGEELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQ
ADIDQLEAEKAELKQRLNSQSKRTIEGIRGPPPSGIATLVSGIAGEEQQRGGAPGQAPGI
VPGPGLVKDSPLLLQQISAMRLHISQLQHENSVLKGAQMKASLAALPPLHVAKLSLPPHE
GPGSELAAGALYRKTNQLLETLNQLSTHTHVVDITRSSPAAKSPSAQLLEQVTQLKSLSD
TIEKLKDEVLKETVSQRPGATVPTDFATFPSSAFLRAKEEQQDDTVYMGKVTFSCAAGLG
QRHRLVLTQEQLHQLHDRLIS
Sequence of entity 10 (U), FASTA
>8PTK_10 Dynactin 6 (chains U)
MAEKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQA
LIINAHPDNITPDAEDSEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILT
SGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKT
MKGSSTPVKN
Sequence of entity 11 (W), FASTA
>8PTK_11 Dynactin subunit 5 (chains W)
MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH
CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC
VLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLT
QV
Sequence of entity 12 (X, x), FASTA
>8PTK_12 C-Jun-amino-terminal kinase-interacting protein 3 (chains X, x)
SNIEFLKMMEIQMDEGGGVVVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVK
ELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFED
ALEQEKKELQIQVEHYEFQTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQ
TYVEHIERSKMQQVGGNSQTESSLPGRRKERPTSLNVFPLADGTVRAQIGGKLVPAGDHW
HLSDLGQLQSSSSYQCPQDEMSESGQSSAAATPSTTGTKSNTPTSSVPSAAVTPLNESLQ
PLGDYGVGSKNSKRAREKRDSRNMEVQVTQEMRNVSIGMGSSDEWSDVQDIIDSTPELDM
CPETRLDRTGSSPTQGIVNKAFGINTDSLYHELSTAGSEVIGDVDEGADLLGEFSVRDDF
FGMGKEVGNLLLENSQLLETKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLE
NRIKELEEELKRVKSEAIIARREPKEEAEDVSSYLCTESDKIPMAQRRRFTRVEMARVLM
ERNQYKERLMELQEAVRWTEMIRASREGSGSGRWSHPQFEK
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ANP | Phosphoaminophosphonic acid-adenylate ester | C10 H17 N6 O12 P3 | 4 |
| MG | Magnesium ion | Mg | 6 |
| ZN | Zinc ion | Zn | 3 |
| ATP | Adenosine-5'-triphosphate | C10 H16 N5 O13 P3 | 6 |
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 16 |
Primary citation
Molecular mechanism of dynein-dynactin complex assembly by LIS1. Singh, K., Lau, C.K., Manigrasso, G. et al. Science (2024) 383:eadk8544-eadk8544. DOI 10.1126/science.adk8544 · PubMed
Other PDB entries of the same protein (UniProt P43034 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7MT1 1.3 Å, Crystal structure of Human Platelet-activating factor acetylhydrolase IB subunit beta…
- 9E0Z 2.86 Å, Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Nde1-Lis1…
- 9E11 2.86 Å, Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Lis1 condition
- 9DZY 3.1 Å, Cryo-EM structure of Pre-Chi dynein bound to Lis1
- 9E0T 3.1 Å, Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
- 8FDT 3.2 Å, Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex…
- 9E0W 3.2 Å, Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
- 8FDU 3.3 Å, Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex…
- 9E22 3.3 Å, Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
- 8PQY 3.8 Å, Cytoplasmic dynein-1 motor domain bound to LIS1
- 9YNC 3.93 Å, Motor domains of phi-like human dynein-1 bound to dynactin-p150glued and LIS1
- 8DYV 3.97 Å, Structure of human cytoplasmic dynein-1 bound to one Lis1
Browse structure collections
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