8UTI: Cytoplasmic 60S subunit biogenesis factor REH1
Eukaryotic 80S ribosome with Reh1 and A/P site tRNA. Determined by electron microscopy at 3.13 Å resolution. Released 6 Nov 2024.
- Method
- Electron microscopy
- Resolution
- 3.13 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 82
- Atoms
- 196,410
- Mol. weight
- 3139.29 kDa
- Ligands
- 3HE
- Released
- 6 Nov 2024
Explore 8UTI in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8UTI contains 514 α-helices and 519 β-strands across 75 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain AA: 5 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 17-19 | 3 | |
| α-helix | 44-53 | 10 | |
| β-strand | 60 | 1 | 91 |
| α-helix | 62-69 | 8 | |
| α-helix | 74-86 | 13 | |
| β-strand | 91-94 | 4 | 91 |
| β-strand | 99-101 | 3 | 91 |
Chain La: 5 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-20 | 9 | |
| α-helix | 24-30 | 7 | |
| β-strand | 32-34 | 3 | 78 |
| β-strand | 35 | 1 | 79 |
| α-helix | 37-43 | 7 | |
| β-strand | 47-49 | 3 | 78 |
| β-strand | 55-58 | 4 | 79 |
| β-strand | 67-69 | 3 | 79 |
| β-strand | 70-74 | 5 | 80 |
| β-strand | 79-82 | 4 | 80 |
| β-strand | 86-88 | 3 | 81 |
| β-strand | 94-96 | 3 | 81 |
| β-strand | 99 | 1 | 80 |
| α-helix | 101-103 | 3 | |
| β-strand | 104-108 | 5 | 79 |
| α-helix | 113-122 | 10 | |
Chain Lb: 6 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-13 | 5 | 90 |
| β-strand | 22-29 | 8 | 90 |
| β-strand | 40-48 | 9 | 90 |
| α-helix | 49-52 | 4 | |
| α-helix | 59-65 | 7 | |
| β-strand | 69-76 | 8 | 90 |
| α-helix | 77-79 | 3 | |
| β-strand | 80-86 | 7 | 90 |
| α-helix | 98-102 | 5 | |
| α-helix | 104-123 | 20 | |
| α-helix | 128-131 | 4 | |
Chain Lc: 6 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-10 | 4 | |
| α-helix | 42-47 | 6 | |
| β-strand | 72-74 | 3 | 92 |
| α-helix | 75-78 | 4 | |
| α-helix | 84-92 | 9 | |
| β-strand | 99-100 | 2 | 162 |
| β-strand | 101-103 | 3 | 93 |
| α-helix | 104-107 | 4 | |
| β-strand | 111-113 | 3 | 92 |
| β-strand | 124-127 | 4 | 93 |
| β-strand | 129-130 | 2 | 92 |
| α-helix | 132-141 | 10 | |
| β-strand | 144-147 | 4 | 93 |
Chain Ld: 3 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-17 | 6 | |
| β-strand | 22 | 1 | 39 |
| α-helix | 23-25 | 3 | |
| α-helix | 37-57 | 21 | |
Chain LD: 8 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| α-helix | 14-16 | 3 | |
| α-helix | 34-38 | 5 | |
| β-strand | 40-49 | 10 | 98 |
| α-helix | 57 | 1 | |
| β-strand | 58-64 | 7 | 98 |
| β-strand | 71-77 | 7 | 98 |
| β-strand | 83 | 1 | 26 |
| β-strand | 87-91 | 5 | 98 |
| β-strand | 101-103 | 3 | 98 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 98 |
| β-strand | 116 | 1 | 99 |
| β-strand | 120 | 1 | 100 |
| β-strand | 122 | 1 | 100 |
| β-strand | 126 | 1 | 99 |
| β-strand | 134-140 | 7 | 98 |
| β-strand | 145-149 | 5 | 98 |
| β-strand | 155-159 | 5 | 98 |
| β-strand | 163-166 | 4 | 98 |
| α-helix | 182-190 | 9 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 101 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 101 |
Chain Le: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-19 | 10 | |
| β-strand | 22-25 | 4 | 109 |
| α-helix | 27-36 | 10 | |
| β-strand | 41-45 | 5 | 109 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-70 | 5 | 109 |
| α-helix | 74-81 | 8 | |
| β-strand | 89-94 | 6 | 109 |
Chain LE: 14 helices, 18 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 14-16 | 3 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 104 |
| β-strand | 45-60 | 16 | 105 |
| β-strand | 70-80 | 11 | 105 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 106 |
| β-strand | 98-106 | 9 | 106 |
| α-helix | 112-115 | 4 | |
| α-helix | 116-118 | 3 | |
| α-helix | 131-134 | 4 | |
| α-helix | 142-153 | 12 | |
| β-strand | 157-164 | 8 | 106 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 106 |
| β-strand | 183-184 | 2 | 104 |
| α-helix | 188-197 | 10 | |
| β-strand | 201-203 | 3 | 106 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 105 |
| β-strand | 226-227 | 2 | 107 |
| α-helix | 229-232 | 4 | |
| α-helix | 235-239 | 5 | |
| β-strand | 268-269 | 2 | 107 |
| β-strand | 274-286 | 13 | 105 |
| β-strand | 311 | 1 | 108 |
| β-strand | 315 | 1 | 108 |
| β-strand | 321-325 | 5 | 105 |
| β-strand | 335-340 | 6 | 105 |
| β-strand | 358-359 | 2 | 105 |
| α-helix | 373-380 | 8 | |
67 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S rRNA | A | RNA | 3394 | Saccharomyces cerevisiae | |
| 5S rRNA | B | RNA | 121 | Saccharomyces cerevisiae | |
| 5.8S rRNA | C | RNA | 158 | Saccharomyces cerevisiae | |
| Messenger RNA (5'-R(P*AP*AP*UP*AP*AP*UP*GP*AP*AP*AP*A)-3') | D | RNA | 10 | Saccharomyces cerevisiae | |
| A site tRNA | m | RNA | 76 | Saccharomyces cerevisiae | |
| P site initiator tRNA | n | RNA | 75 | Saccharomyces cerevisiae | |
| Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag) | z | protein | 588 | Saccharomyces cerevisiae | Q06709 (AlphaFold model) |
| 18S rRNA | E | RNA | 1800 | Saccharomyces cerevisiae | |
| 40S ribosomal protein S0-A | SP | protein | 206 | Saccharomyces cerevisiae | P32905 (AlphaFold model) |
| 40S ribosomal protein S1-A | SQ | protein | 232 | Saccharomyces cerevisiae | P33442 (AlphaFold model) |
| 40S ribosomal protein S15 | SE | protein | 117 | Saccharomyces cerevisiae | Q01855 (AlphaFold model) |
| 40S ribosomal protein S2 | SR | protein | 216 | Saccharomyces cerevisiae | P25443 |
70 more molecules are not listed.
Sequence of entity 1 (A), FASTA
>8UTI_1 25S rRNA (chains A)
UUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAA
AGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAA
AUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCCUU
GUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGUGC
GGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGGGU
GGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAU
GGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGGGA
AGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUC
GCAUUUCACUUGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCUUG
CCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACGUA
AGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGAGU
CUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAGG
UUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGAGU
AAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAG
AGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUGGG
UAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCA
GGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGGGU
CGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUU
GAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCG
AUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCACA
AAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGG
AGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGU
GUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGGAG
GUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGU
GGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACGUC
AACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGC
CUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAUAU
GGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAGUU
AUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUUAU
GGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAAUC
CACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGGU
GAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAA
CUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCGG
GCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCUUG
UUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAACU
UAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGU
CAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGA
AAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAU
GCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAU
CUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAA
GACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAA
GUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUG
AAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGAUC
CGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGAUA
ACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUA
AAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGA
UCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACU
GGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCU
UCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAAC
GUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUACC
GCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGG
CUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUCUA
AGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUACG
AAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGCGG
AAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAUUU
GUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGA
UCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (B), FASTA
>8UTI_2 5S rRNA (chains B)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 3 (C), FASTA
>8UTI_3 5.8S rRNA (chains C)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 4 (D), FASTA
>8UTI_4 Messenger RNA (5'-R(P*AP*AP*UP*AP*AP*UP*GP*AP*AP*AP*A)-3') (chains D)
AAUAUGAAAA
Sequence of entity 5 (m), FASTA
>8UTI_5 A site tRNA (chains m)
GGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUGGUCGCAGGUUCGAAU
CCUGCACGACCCACCA
Sequence of entity 6 (n), FASTA
>8UTI_6 P site initiator tRNA (chains n)
AGCGCCGUGGCGCAGUGGAAGCGCGCAGGGCUCAUAACCCUGAUGUCCUCGGAUCGAAAC
CGAGCGGCGCUACCA
Sequence of entity 7 (z), FASTA
>8UTI_7 Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag) (chains z)
MKTAALAQHDEAVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEA
KKLNDAQAPKVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKK
LNGAQAPKVDANSAGKSTGSGSENLYFQGDYKDDDDKSSTFFTCNCCVIQFKTSDLQRYH
MKTEWHRYNLKRRIANLPPIGAEQFAEKLQISEKEQAENQVDEFGFPVLKPVMNQSNALP
QKQKKPIKSKRGRKVGTNLLKRKDRDIAKEKQNRSVSPSGSISSQLSNLTVGTENTNTDY
GEDTVSEYGFTSDSNYEYATSDEELDIADKPSDKENEKITITECIYCGKDNKEVERNVKH
MFSEHGLFIPERSYLIDLNGLLEFLIKMIVIDHNCLCCNFHGSGLESIRAHMASKRHCRL
PYETKEERQLFAPFYDFTYDDHSISKNLQNDRAITSKLSSVYGAKNDEEDGEVDITLVSS
ENDINANYTTVSIDESGLELTLPTGARLGHRAGQRYYRQNLPSQPNPNESRRTITAADRR
MVSGVTEKQYKKGMKKMQQLEKNAINTQIRREIKRVNFQTHYRDELLQ
Sequence of entity 8 (E), FASTA
>8UTI_8 18S rRNA (chains E)
UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU
AAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAU
UUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCUUAA
AAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCU
UUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAA
AUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAA
CGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGA
AGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACG
AUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGG
AACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAU
AUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUGGGCCCGGUUGGCCGGUCCG
AUUUUUUCGUGUACUGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUG
UGGCUCUUGGCGAACCAGGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUA
UUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUU
UCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUCAGA
GGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUU
UCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAA
CCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUUUUUAAUGACCCACUCGGCACCUU
ACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAG
GAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGG
GAAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUU
GUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAU
AACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACUUCU
UAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCC
CUUAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGC
CGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAU
UGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCC
UGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGG
AUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAUUUGGACAAACUUGGUCA
UUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence of entity 9 (SP), FASTA
>8UTI_9 40S ribosomal protein S0-A (chains SP)
SLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAA
RIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLV
IVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREV
LRLRGALVDRTQPWSIMPDLYFYRDP
Sequence of entity 10 (SQ), FASTA
>8UTI_10 40S ribosomal protein S1-A (chains SQ)
AVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDAL
KGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLI
EANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTL
AQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHG
Sequence of entity 11 (SE), FASTA
>8UTI_11 40S ribosomal protein S15 (chains SE)
KTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEK
PAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHG
Sequence of entity 12 (SR), FASTA
>8UTI_12 40S ribosomal protein S2 (chains SR)
GWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAG
QRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHS
LATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKA
AFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSDEASA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| 3HE | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2… | C15 H23 N O4 | 1 |
Primary citation
The assembly factor Reh1 is released from the ribosome during its initial round of translation. Musalgaonkar, S., Yelland, J.N., Chitale, R. et al. Nat Commun (2025) 16:1278-1278. DOI 10.1038/s41467-025-55844-8 · PubMed
Other PDB entries of the same protein (UniProt Q06709 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9YDB 2.83 Å, Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition.…
- 5H4P 3.07 Å, Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1,…
- 6QIK 3.1 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- 8UT0 3.22 Å, Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- 6RI5 3.3 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- 6QT0 3.4 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- 6QTZ 3.5 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- 6S05 3.9 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Browse structure collections
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