8X8V: Polyhedrin,Myc proto-oncogene protein

Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment. Determined by X-ray diffraction at 2.0 Å resolution. Released 5 Jun 2024.

Method: X-ray diffraction
Resolution: 2.0 Å
Organisms: Bombyx mori cypovirus 1, Homo sapiens
Chains: 1
Atoms: 1,546
Mol. weight: 28.3 kDa
Released: 5 Jun 2024

Explore 8X8V in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8X8V contains 9 α-helices and 14 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 9 helices, 14 β-strands

Element	Residues	Length	Sheet
α-helix	13-29	17
β-strand	34-43	10	1
β-strand	48-56	9	1
β-strand	58-66	9	2
β-strand	106-113	8	1
β-strand	117	1	3
α-helix	119-121	3
β-strand	123-127	5	2
α-helix	137-139	3
β-strand	144	1	2
α-helix	147-149	3
α-helix	150	1
β-strand	151-155	5	1
β-strand	158-167	10	1
α-helix	168-169	2
β-strand	174-182	9	2
β-strand	183	1	3
α-helix	197-206	10
β-strand	208-214	7	1
α-helix	217-220	4
α-helix	221-225	5
β-strand	232-233	2	4
β-strand	239-240	2	4

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Polyhedrin,Myc proto-oncogene protein	A	protein	248	Bombyx mori cypovirus 1, Homo sapiens	P01106 (AlphaFold model), P11041

Sequence of entity 1 (A), FASTA

>8X8V_1 Polyhedrin,Myc proto-oncogene protein (chains A)
MADVAGTSNRDFRGYILSVQAEEQKNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVG
ISETFKALKEYREGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVR
TIKMAKGNAVSVPDEYLQRSHPWEATGIKYQKIKRDGEIVGYSHYFELPHEYNSISLAVS
GVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSY
GVALSNRQ

Primary citation

High-throughput structure determination of an intrinsically disordered protein using cell-free protein crystallization. Kojima, M., Abe, S., Furuta, T. et al. Proc Natl Acad Sci U S A (2024) 121:e2322452121-e2322452121. DOI 10.1073/pnas.2322452121 · PubMed

Other PDB entries of the same protein (UniProt P01106 (AlphaFold model), which also has an AlphaFold model), best resolution first:

9QNH 1.3 Å, Myc pS294 phosphopeptide binding to 14-3-3sigma
6G6K 1.35 Å, The crystal structures of Human MYC:MAX bHLHZip complex
1NKP 1.8 Å, Crystal structure of Myc-Max recognizing DNA
8Q1N 1.84 Å, Cyclic peptide binder of the WBM-site of WDR5
4Y7R 1.9 Å, Crystal structure of WDR5 in complex with MYC MbIIIb peptide
8J2Q 1.92 Å, Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
5I4Z 1.95 Å, Structure of apo OmoMYC
8X8S 2.04 Å, Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
1EE4 2.1 Å, Crystal structure of yeast karyopherin (importin) alpha in a complex with a C-myc nls…
6G6L 2.2 Å, The crystal structures of Human MYC:MAX bHLHZip complex
6G6J 2.25 Å, The crystal structures of Human MYC:MAX bHLHZip complex
6E16 2.4 Å, Ternary structure of c-Myc-TBP-TAF1

Browse structure collections

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