9BDN: 80S ribosome with angiogenin and tRNAAla
80S ribosome with angiogenin and tRNAAla. Determined by electron microscopy at 3.1 Å resolution. Released 24 Jul 2024.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organisms
- Oryctolagus cuniculus, Homo sapiens, Escherichia coli
- Chains
- 85
- Atoms
- 217,108
- Mol. weight
- 3314.38 kDa
- Released
- 24 Jul 2024
Explore 9BDN in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9BDN contains 533 α-helices and 586 β-strands across 77 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain AL02: 6 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| β-strand | 18 | 1 | 27 |
| α-helix | 30-32 | 3 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-50 | 11 | 28 |
| β-strand | 57-64 | 8 | 28 |
| β-strand | 71-77 | 7 | 28 |
| β-strand | 79 | 1 | 29 |
| β-strand | 83 | 1 | 30 |
| β-strand | 87-91 | 5 | 28 |
| β-strand | 101-103 | 3 | 28 |
| β-strand | 111-114 | 4 | 28 |
| β-strand | 116 | 1 | 31 |
| β-strand | 126 | 1 | 31 |
| β-strand | 134-140 | 7 | 28 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 28 |
| β-strand | 155-159 | 5 | 28 |
| β-strand | 163-166 | 4 | 28 |
| β-strand | 169 | 1 | 29 |
| α-helix | 182-190 | 9 | |
| β-strand | 193 | 1 | 27 |
| β-strand | 224-225 | 2 | 32 |
| α-helix | 230 | 1 | |
| β-strand | 237-238 | 2 | 32 |
Chain AL03: 12 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 32-34 | 3 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42 | 1 | 42 |
| β-strand | 45-54 | 10 | 43 |
| β-strand | 57-59 | 3 | 44 |
| β-strand | 71-73 | 3 | 44 |
| β-strand | 76-80 | 5 | 43 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 45 |
| β-strand | 98-106 | 9 | 45 |
| α-helix | 112-117 | 6 | |
| α-helix | 131-134 | 4 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-165 | 7 | 45 |
| β-strand | 180-184 | 5 | 45 |
| β-strand | 186 | 1 | 42 |
| α-helix | 190-199 | 10 | |
| β-strand | 204-205 | 2 | 45 |
| α-helix | 207-209 | 3 | |
| β-strand | 216-222 | 7 | 43 |
| β-strand | 227-229 | 3 | 46 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-241 | 5 | |
| β-strand | 270-272 | 3 | 46 |
| β-strand | 276-287 | 12 | 43 |
| β-strand | 292-294 | 3 | 47 |
| β-strand | 297-299 | 3 | 47 |
| β-strand | 320 | 1 | 48 |
| β-strand | 324 | 1 | 48 |
| β-strand | 330-335 | 6 | 43 |
| β-strand | 344-349 | 6 | 43 |
| β-strand | 365-367 | 3 | 44 |
| α-helix | 382-389 | 8 | |
Chain AL04: 21 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-11 | 5 | 52 |
| β-strand | 17-23 | 7 | 52 |
| α-helix | 24-25 | 2 | |
| α-helix | 26-29 | 4 | |
| α-helix | 34-44 | 11 | |
| α-helix | 49-51 | 3 | |
| β-strand | 64-66 | 3 | 53 |
| β-strand | 77-79 | 3 | 53 |
| α-helix | 117-130 | 14 | |
| α-helix | 136-139 | 4 | |
| β-strand | 153-154 | 2 | 52 |
| α-helix | 156-160 | 5 | |
| α-helix | 164-173 | 10 | |
| α-helix | 177-185 | 9 | |
| β-strand | 188-189 | 2 | 54 |
| α-helix | 193-197 | 5 | |
| β-strand | 201-202 | 2 | 54 |
| β-strand | 208-211 | 4 | 55 |
| β-strand | 228-231 | 4 | 55 |
| β-strand | 234 | 1 | 55 |
| α-helix | 242-244 | 3 | |
| β-strand | 250-251 | 2 | 55 |
| β-strand | 252-253 | 2 | 52 |
| α-helix | 254-257 | 4 | |
| α-helix | 260-263 | 4 | |
| α-helix | 279-282 | 4 | |
| α-helix | 289-293 | 5 | |
| α-helix | 296-299 | 4 | |
| α-helix | 303-305 | 3 | |
| α-helix | 315-317 | 3 | |
| α-helix | 322-328 | 7 | |
| α-helix | 332-337 | 6 | |
| α-helix | 343-358 | 16 | |
Chain AL05: 18 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-15 | 6 | |
| α-helix | 21-24 | 4 | |
| α-helix | 30-37 | 8 | |
| α-helix | 41-43 | 3 | |
| β-strand | 49-55 | 7 | 61 |
| β-strand | 60-66 | 7 | 61 |
| β-strand | 73-79 | 7 | 61 |
| α-helix | 83-86 | 4 | |
| α-helix | 95-112 | 18 | |
| α-helix | 139-142 | 4 | |
| β-strand | 145-147 | 3 | 61 |
| α-helix | 158-169 | 12 | |
| α-helix | 192-199 | 8 | |
| α-helix | 202-208 | 7 | |
| α-helix | 210-214 | 5 | |
| α-helix | 216-222 | 7 | |
| α-helix | 224-228 | 5 | |
| α-helix | 236-247 | 12 | |
| α-helix | 255-257 | 3 | |
| α-helix | 259-261 | 3 | |
| α-helix | 269-272 | 4 | |
| α-helix | 273-291 | 19 | |
Chain AL06: 10 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 45-47 | 3 | |
| β-strand | 51-53 | 3 | 66 |
| β-strand | 56-57 | 2 | 66 |
| α-helix | 61-65 | 5 | |
| α-helix | 70-72 | 3 | |
| β-strand | 94-98 | 5 | 67 |
| β-strand | 107-111 | 5 | 67 |
| α-helix | 114-116 | 3 | |
| α-helix | 124-128 | 5 | |
| α-helix | 136-138 | 3 | |
| β-strand | 151-155 | 5 | 68 |
| β-strand | 163 | 1 | 69 |
| β-strand | 164-166 | 3 | 68 |
| β-strand | 167-170 | 4 | 70 |
| β-strand | 176-178 | 3 | 70 |
| α-helix | 182-185 | 4 | |
| β-strand | 190-192 | 3 | 70 |
| α-helix | 194-196 | 3 | |
| β-strand | 197-203 | 7 | 68 |
| α-helix | 247-264 | 18 | |
| α-helix | 270-275 | 6 | |
| β-strand | 277 | 1 | 69 |
Chain AL07: 12 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 25-63 | 39 | |
| α-helix | 65-77 | 13 | |
| β-strand | 80-82 | 3 | 76 |
| α-helix | 83-86 | 4 | |
| β-strand | 88-93 | 6 | 77 |
| α-helix | 102-110 | 9 | |
| β-strand | 115 | 1 | 78 |
| β-strand | 118-123 | 6 | 77 |
| α-helix | 126-132 | 7 | |
| β-strand | 139-142 | 4 | 77 |
| α-helix | 146-156 | 11 | |
| β-strand | 158-160 | 3 | 79 |
| β-strand | 165-167 | 3 | 79 |
| α-helix | 171-173 | 3 | |
| α-helix | 179-181 | 3 | |
| α-helix | 186-194 | 9 | |
| α-helix | 200-206 | 7 | |
| β-strand | 207 | 1 | 79 |
| α-helix | 208-209 | 2 | |
| β-strand | 210-211 | 2 | 77 |
| β-strand | 225 | 1 | 80 |
| β-strand | 232 | 1 | 80 |
| β-strand | 233-234 | 2 | 77 |
| α-helix | 239-246 | 8 | |
Chain AL08: 17 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 112-122 | 11 | |
| α-helix | 123-125 | 3 | |
| β-strand | 129 | 1 | 83 |
| α-helix | 131-134 | 4 | |
| α-helix | 142-152 | 11 | |
| α-helix | 156-158 | 3 | |
| α-helix | 160-165 | 6 | |
| α-helix | 169-173 | 5 | |
| α-helix | 185-187 | 3 | |
| β-strand | 190-191 | 2 | 84 |
| α-helix | 193-196 | 4 | |
| α-helix | 197-199 | 3 | |
| β-strand | 208-211 | 4 | 84 |
| α-helix | 217-219 | 3 | |
| α-helix | 222-227 | 6 | |
| β-strand | 234-237 | 4 | 84 |
| α-helix | 240-243 | 4 | |
| β-strand | 255-256 | 2 | 84 |
| α-helix | 265-276 | 12 | |
| α-helix | 283-286 | 4 | |
| β-strand | 291 | 1 | 83 |
| α-helix | 294-296 | 3 | |
| α-helix | 297-313 | 17 | |
Chain AL09: 4 helices, 15 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 3 | 1 | 88 |
| β-strand | 8-11 | 4 | 89 |
| β-strand | 19-21 | 3 | 90 |
| β-strand | 24-28 | 5 | 90 |
| β-strand | 33-37 | 5 | 90 |
| β-strand | 44-48 | 5 | 89 |
| β-strand | 54-58 | 5 | 89 |
| β-strand | 62 | 1 | 88 |
| α-helix | 64-67 | 4 | |
| α-helix | 70-85 | 16 | |
| β-strand | 88-95 | 8 | 91 |
| β-strand | 102-106 | 5 | 92 |
| β-strand | 111-115 | 5 | 92 |
| β-strand | 126-127 | 2 | 92 |
| β-strand | 133-135 | 3 | 91 |
| α-helix | 136-137 | 2 | |
| β-strand | 143-148 | 6 | 91 |
| α-helix | 151-164 | 14 | |
| β-strand | 178-185 | 8 | 91 |
69 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 18S rRNA | A18S | RNA | 1869 | Oryctolagus cuniculus | |
| 28S rRNA | A28S | RNA | 3601 | Oryctolagus cuniculus | |
| 5.8S rRNA | A58S | RNA | 156 | Oryctolagus cuniculus | |
| 5S rRNA | A5S | RNA | 120 | Oryctolagus cuniculus | |
| 60S ribosomal protein L8 | AL02 | protein | 248 | Oryctolagus cuniculus | G1TT27 (AlphaFold model) |
| 60S ribosomal protein L3 | AL03 | protein | 394 | Oryctolagus cuniculus | G1TL06 (AlphaFold model) |
| 60S ribosomal protein L4 | AL04 | protein | 362 | Oryctolagus cuniculus | A0A5F9DCT1 (AlphaFold model) |
| 60S ribosomal protein L5 | AL05 | protein | 293 | Oryctolagus cuniculus | P19949 (AlphaFold model) |
| 60S ribosomal protein L6 | AL06 | protein | 251 | Oryctolagus cuniculus | G1SKF7 |
| 60S ribosomal protein L7 | AL07 | protein | 225 | Oryctolagus cuniculus | G1SV32 |
| Large ribosomal subunit protein eL8 | AL08 | protein | 240 | Oryctolagus cuniculus | G1STW0 |
| 60S ribosomal protein L9 | AL09 | protein | 190 | Oryctolagus cuniculus | G1SWI6 |
72 more molecules are not listed.
Sequence of entity 1 (A18S), FASTA
>9BDN_1 18S rRNA (chains A18S)
UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUA
AGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUU
UGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCG
ACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAGAUCAAAACCAACCCG
GUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAU
AACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUA
UCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGG
GUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCG
CGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCU
UUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAG
GGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGC
UGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGA
GCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGU
CCCGCGGGGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCCCGAGCC
GCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUC
GGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGU
GAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCA
UUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCA
UAAACGAUGCCGACUGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCG
GGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAA
UUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA
CCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUG
GGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAAC
GAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAAC
UUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUG
CCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCU
ACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAA
UUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAG
UCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCC
UCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGA
ACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAA
GGAUCAUUA
Sequence of entity 2 (A28S), FASTA
>9BDN_2 28S rRNA (chains A28S)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCG
GCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAA
AGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUA
CCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUA
AGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGCGGUC
CGGCCGUGCCGGCGGGGCGGAUCUCCCGCUCCCGUCGGCGGGGGACCGCCCCCCGGCCGG
CGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGAC
GGCUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGCCCCGGGUGUUACAGCCCCGCCC
CGGCAGCAGCAGCUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUGCGCCGCGCUCU
CCCCCCUCGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUGGGGCGGACUGUCCA
GUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGUCCCCCGCGAGCGCA
CGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGU
CUAACACGUGCGCGAGUCGGGGGCUACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCC
GGCGGCGCGCCGCCGGCCGAGGUGGGAUCCCGAGGCCUUCCAGUCCGCCGAGGGCGCACC
ACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCC
GAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCG
UAGCGGUCCUGACGUGCGAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCG
AACCAUCUAGUAGCUGGUUCCCUCCAAAGUUUCCCUCAGGAUAGCUGGCGCUCUCCGCAG
UUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCU
CAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGUGUGGAGCCGGGCGUGGAAUGCGAG
UGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGG
UUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACA
GCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCG
AAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCU
GGCAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACGCCGCGACGAGUAGGAGGG
CCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAG
AUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGU
UCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUU
CCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCAGCCGAUCGAAAGGGAGUCGGGUUCAG
AUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGAC
CGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAG
GGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUU
CCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAUC
UCGCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGU
UGGAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUG
GCUCUAAGGGCUGGCAGCCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAA
UUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAG
UGCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUA
UGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUG
AACGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCU
UGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAA
GAGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCGGCCGCCGGUGAAAUACCACUACUCUG
AUCGUUUUUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCGGGCUCUCGCUUCUGGCGCC
AAGCGCCCGGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGAC
UGGGGCGGUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACA
GAAACCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUA
CAGACCGUGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUG
UCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCG
CUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUU
GGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUA
GUUUUACCCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACC
GCAGGUUCAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAU
CUGUGGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUAGCGC
CGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCGGGGUCCGGUGCGGAGAGCCCU
UCGUCCCGGGAAACGGGGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCGCA
CGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUCGGGGUUU
CGUACGUAGCAGAGCAGCUGCUGCGAUCUAUUGAAAGUCAGCCCUCGACACAAGGGUUUG
U
Sequence of entity 3 (A58S), FASTA
>9BDN_3 5.8S rRNA (chains A58S)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 4 (A5S), FASTA
>9BDN_4 5S rRNA (chains A5S)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 5 (AL02), FASTA
>9BDN_5 60S ribosomal protein L8 (chains AL02)
GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKV
VFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPG
DRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILK
AGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR
RTGRLRGT
Sequence of entity 6 (AL03), FASTA
>9BDN_6 60S ribosomal protein L3 (chains AL03)
SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD
RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN
WHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHLM
EIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP
RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN
NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE
KIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKD
Sequence of entity 7 (AL04), FASTA
>9BDN_7 60S ribosomal protein L4 (chains AL04)
ACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQ
TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKR
YAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIK
KVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLA
PGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRA
LRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAAK
SD
Sequence of entity 8 (AL05), FASTA
>9BDN_8 60S ribosomal protein L5 (chains AL05)
FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIIC
QIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQ
VEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPG
YDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKK
AHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA
Sequence of entity 9 (AL06), FASTA
>9BDN_9 60S ribosomal protein L6 (chains AL06)
KGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVG
GDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRH
RGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYF
KKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFAL
TNGVYPHKLVF
Sequence of entity 10 (AL07), FASTA
>9BDN_10 60S ribosomal protein L7 (chains AL07)
NFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYV
PAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG
YPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYNIICMEDLIHEIYTVGKHFKE
ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
Sequence of entity 11 (AL08), FASTA
>9BDN_11 Large ribosomal subunit protein eL8 (chains AL08)
VVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQV
LDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTL
VENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCILKGKARLGRLVHRKTCTTVAFTQ
VNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
Sequence of entity 12 (AL09), FASTA
>9BDN_12 60S ribosomal protein L9 (chains AL09)
MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQA
Primary citation
Structural mechanism of angiogenin activation by the ribosome. Loveland, A.B., Koh, C.S., Ganesan, R. et al. Nature (2024) 630:769-776. DOI 10.1038/s41586-024-07508-8 · PubMed
Other PDB entries of the same protein (UniProt G1TT27 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8RJB 2.69 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 8RJD 2.79 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8B6C 2.79 Å, Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
- 7UCK 2.8 Å, 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- 9BDL 2.8 Å, 80S ribosome with angiogenin
- 9QQA 2.8 Å, Ternary complex of translating ribosome, NAC and NMT1
Browse structure collections
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