9MU9: Histone H2A
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map. Determined by electron microscopy at 7.8 Å resolution. Released 19 Feb 2025.
- Method
- Electron microscopy
- Resolution
- 7.8 Å
- Organism
- Drosophila melanogaster
- Chains
- 21
- Atoms
- 42,423
- Mol. weight
- 615.73 kDa
- Ligands
- ZN
- Released
- 19 Feb 2025
Explore 9MU9 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9MU9 contains 200 α-helices and 215 β-strands across 18 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chains a and e: 4 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 46-55 | 10 | |
| α-helix | 65-79 | 15 | |
| β-strand | 84-85 | 2 | 9 |
| α-helix | 87-114 | 28 | |
| β-strand | 119 | 1 | 10 |
| α-helix | 122-132 | 11 | |
Chain A: 73 helices, 67 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 11 | 1 | 11 |
| β-strand | 17-18 | 2 | 12 |
| β-strand | 21 | 1 | 13 |
| α-helix | 24-30 | 7 | |
| β-strand | 43-44 | 2 | 14 |
| β-strand | 47-48 | 2 | 14 |
| α-helix | 49 | 1 | |
| β-strand | 82-90 | 9 | 15 |
| α-helix | 96-103 | 8 | |
| β-strand | 106 | 1 | 16 |
| β-strand | 113 | 1 | 16 |
| α-helix | 120-128 | 9 | |
| α-helix | 133-143 | 11 | |
| β-strand | 149 | 1 | 17 |
| α-helix | 163-166 | 4 | |
| α-helix | 169-171 | 3 | |
| β-strand | 179 | 1 | 17 |
| α-helix | 180-181 | 2 | |
| β-strand | 182-185 | 4 | 18 |
| β-strand | 190-193 | 4 | 18 |
| β-strand | 205-207 | 3 | 18 |
| α-helix | 210-218 | 9 | |
| α-helix | 222-227 | 6 | |
| α-helix | 237-240 | 4 | |
| β-strand | 242-247 | 6 | 15 |
| β-strand | 259 | 1 | 19 |
| β-strand | 261 | 1 | 19 |
| α-helix | 267-287 | 21 | |
| α-helix | 292-310 | 19 | |
| α-helix | 318-320 | 3 | |
| β-strand | 321 | 1 | 20 |
| α-helix | 322 | 1 | |
| β-strand | 327 | 1 | 20 |
| α-helix | 331-335 | 5 | |
| α-helix | 349-351 | 3 | |
| β-strand | 354-361 | 8 | 21 |
| β-strand | 369-372 | 4 | 21 |
| α-helix | 374-379 | 6 | |
| β-strand | 381-385 | 5 | 22 |
| α-helix | 386 | 1 | |
| α-helix | 388-390 | 3 | |
| α-helix | 391-400 | 10 | |
| β-strand | 408-412 | 5 | 22 |
| β-strand | 418-420 | 3 | 22 |
| α-helix | 427-429 | 3 | |
| β-strand | 437-441 | 5 | 22 |
| β-strand | 447-451 | 5 | 21 |
| α-helix | 458-460 | 3 | |
| β-strand | 461-468 | 8 | 21 |
| β-strand | 474-476 | 3 | 21 |
| α-helix | 478-480 | 3 | |
| α-helix | 481-484 | 4 | |
| β-strand | 492-496 | 5 | 21 |
| α-helix | 501-506 | 6 | |
| α-helix | 507-511 | 5 | |
| β-strand | 512 | 1 | 21 |
| α-helix | 514-516 | 3 | |
| β-strand | 518 | 1 | 23 |
| β-strand | 525 | 1 | 23 |
| α-helix | 531-540 | 10 | |
| β-strand | 546-548 | 3 | 24 |
| α-helix | 549-556 | 8 | |
| α-helix | 566-569 | 4 | |
| β-strand | 571-573 | 3 | 24 |
| β-strand | 577-579 | 3 | 24 |
| α-helix | 580-587 | 8 | |
| β-strand | 594-597 | 4 | 25 |
| β-strand | 619-623 | 5 | 25 |
| β-strand | 626-629 | 4 | 25 |
| α-helix | 644-652 | 9 | |
| α-helix | 654-675 | 22 | |
| α-helix | 681-684 | 4 | |
| α-helix | 688-713 | 26 | |
| α-helix | 718-720 | 3 | |
| α-helix | 725-751 | 27 | |
| α-helix | 757-764 | 8 | |
| α-helix | 770-777 | 8 | |
| β-strand | 781-782 | 2 | 26 |
| β-strand | 785 | 1 | 27 |
| β-strand | 788 | 1 | 27 |
| α-helix | 789-791 | 3 | |
| α-helix | 809-812 | 4 | |
| β-strand | 814-815 | 2 | 26 |
| α-helix | 825-844 | 20 | |
| α-helix | 846-859 | 14 | |
| β-strand | 864-865 | 2 | 28 |
| β-strand | 871-872 | 2 | 28 |
| β-strand | 878-880 | 3 | 28 |
| α-helix | 883-885 | 3 | |
| β-strand | 888 | 1 | 29 |
| β-strand | 893-897 | 5 | 30 |
| α-helix | 905-912 | 8 | |
| α-helix | 919-925 | 7 | |
| β-strand | 926 | 1 | 31 |
| α-helix | 928-936 | 9 | |
| α-helix | 940-961 | 22 | |
| β-strand | 968-972 | 5 | 30 |
| α-helix | 975-985 | 11 | |
| β-strand | 994 | 1 | 31 |
| α-helix | 998-1011 | 14 | |
| α-helix | 1020-1029 | 10 | |
| α-helix | 1031-1040 | 10 | |
| α-helix | 1045-1049 | 5 | |
| α-helix | 1054-1070 | 17 | |
| β-strand | 1072 | 1 | 29 |
| α-helix | 1073-1074 | 2 | |
| β-strand | 1078 | 1 | 28 |
| α-helix | 1080-1088 | 9 | |
| α-helix | 1090-1092 | 3 | |
| α-helix | 1113-1120 | 8 | |
| β-strand | 1130-1134 | 5 | 32 |
| β-strand | 1135 | 1 | 33 |
| α-helix | 1137-1140 | 4 | |
| α-helix | 1143-1153 | 11 | |
| β-strand | 1156 | 1 | 34 |
| β-strand | 1162-1169 | 8 | 35 |
| α-helix | 1173-1175 | 3 | |
| α-helix | 1179-1188 | 10 | |
| β-strand | 1199-1208 | 10 | 35 |
| α-helix | 1210-1215 | 6 | |
| α-helix | 1220-1231 | 12 | |
| β-strand | 1235-1239 | 5 | 35 |
| β-strand | 1248-1254 | 7 | 35 |
| α-helix | 1273-1286 | 14 | |
| β-strand | 1291 | 1 | 34 |
| β-strand | 1299-1302 | 4 | 32 |
| β-strand | 1311-1314 | 4 | 36 |
| β-strand | 1320-1323 | 4 | 36 |
| β-strand | 1327-1331 | 5 | 32 |
| β-strand | 1344 | 1 | 33 |
| β-strand | 1350-1351 | 2 | 32 |
| α-helix | 1354-1360 | 7 | |
| α-helix | 1363-1380 | 18 | |
| α-helix | 1387-1397 | 11 | |
| α-helix | 1418-1422 | 5 | |
| α-helix | 1427-1437 | 11 | |
| β-strand | 1440-1441 | 2 | 12 |
| α-helix | 1446-1452 | 7 | |
| α-helix | 1459-1461 | 3 | |
| β-strand | 1463-1467 | 5 | 37 |
Chain b: 3 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 32-41 | 10 | |
| β-strand | 46 | 1 | 10 |
| α-helix | 51-76 | 26 | |
| β-strand | 81-82 | 2 | 9 |
| α-helix | 84-93 | 10 | |
| β-strand | 97-99 | 3 | 3 |
Chain B: 53 helices, 69 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-16 | 3 | |
| α-helix | 20-37 | 18 | |
| α-helix | 42-49 | 8 | |
| α-helix | 50-55 | 6 | |
| α-helix | 56-62 | 7 | |
| α-helix | 64-65 | 2 | |
| β-strand | 66-67 | 2 | 38 |
| β-strand | 84-94 | 11 | 38 |
| β-strand | 98-100 | 3 | 39 |
| β-strand | 106-108 | 3 | 39 |
| α-helix | 111-116 | 6 | |
| β-strand | 122-134 | 13 | 38 |
| β-strand | 141-154 | 14 | 38 |
| α-helix | 169-174 | 6 | |
| β-strand | 186-188 | 3 | 40 |
| β-strand | 191-195 | 5 | 40 |
| α-helix | 196 | 1 | |
| β-strand | 197-201 | 5 | 41 |
| α-helix | 202 | 1 | |
| β-strand | 207-210 | 4 | 42 |
| β-strand | 216-224 | 9 | 42 |
| β-strand | 234-241 | 8 | 42 |
| α-helix | 249-253 | 5 | |
| β-strand | 257-260 | 4 | 42 |
| β-strand | 268-269 | 2 | 42 |
| α-helix | 270-276 | 7 | |
| α-helix | 282-289 | 8 | |
| α-helix | 296-301 | 6 | |
| α-helix | 303-308 | 6 | |
| α-helix | 315-324 | 10 | |
| α-helix | 334-346 | 13 | |
| α-helix | 359-376 | 18 | |
| α-helix | 382-384 | 3 | |
| α-helix | 389-391 | 3 | |
| β-strand | 392-395 | 4 | 41 |
| α-helix | 397-422 | 26 | |
| α-helix | 432-435 | 4 | |
| α-helix | 439-450 | 12 | |
| α-helix | 460-462 | 3 | |
| β-strand | 468-470 | 3 | 40 |
| α-helix | 476-482 | 7 | |
| β-strand | 485-487 | 3 | 41 |
| α-helix | 502-503 | 2 | |
| β-strand | 510 | 1 | 43 |
| β-strand | 525-526 | 2 | 41 |
| β-strand | 527 | 1 | 43 |
| β-strand | 532-533 | 2 | 44 |
| α-helix | 540-549 | 10 | |
| β-strand | 552-553 | 2 | 45 |
| α-helix | 554-556 | 3 | |
| α-helix | 559-561 | 3 | |
| β-strand | 566-570 | 5 | 45 |
| β-strand | 573-578 | 6 | 45 |
| α-helix | 581-593 | 13 | |
| β-strand | 603-607 | 5 | 45 |
| β-strand | 612-616 | 5 | 45 |
| β-strand | 622-628 | 7 | 44 |
| β-strand | 629-630 | 2 | 46 |
| β-strand | 633-634 | 2 | 46 |
| α-helix | 638-644 | 7 | |
| α-helix | 654-659 | 6 | |
| β-strand | 663-667 | 5 | 44 |
| α-helix | 670-672 | 3 | |
| β-strand | 676-677 | 2 | 44 |
| α-helix | 680-683 | 4 | |
| β-strand | 697-698 | 2 | 44 |
| α-helix | 702-705 | 4 | |
| α-helix | 716-718 | 3 | |
| α-helix | 721-731 | 11 | |
| β-strand | 734 | 1 | 47 |
| β-strand | 749-753 | 5 | 48 |
| β-strand | 757 | 1 | 49 |
| β-strand | 761-762 | 2 | 50 |
| β-strand | 778-784 | 7 | 51 |
| β-strand | 796-799 | 4 | 51 |
| α-helix | 800-805 | 6 | |
| β-strand | 810-819 | 10 | 48 |
| β-strand | 829-831 | 3 | 52 |
| β-strand | 839-840 | 2 | 52 |
| α-helix | 847-849 | 3 | |
| β-strand | 855 | 1 | 53 |
| α-helix | 856-857 | 2 | |
| β-strand | 861-862 | 2 | 48 |
| β-strand | 867-869 | 3 | 53 |
| β-strand | 871-874 | 4 | 52 |
| α-helix | 875-876 | 2 | |
| α-helix | 884-886 | 3 | |
| β-strand | 891-893 | 3 | 52 |
| β-strand | 896-897 | 2 | 53 |
| β-strand | 904-913 | 10 | 48 |
| β-strand | 919-929 | 11 | 48 |
| β-strand | 936-938 | 3 | 54 |
| β-strand | 945-946 | 2 | 54 |
| β-strand | 947-951 | 5 | 51 |
| α-helix | 953-955 | 3 | |
| β-strand | 958-959 | 2 | 55 |
| β-strand | 967-969 | 3 | 51 |
| α-helix | 973-977 | 5 | |
| α-helix | 980-995 | 16 | |
| α-helix | 998 | 1 | |
| β-strand | 999-1000 | 2 | 50 |
| α-helix | 1010-1018 | 9 | |
| β-strand | 1027-1028 | 2 | 51 |
| β-strand | 1030-1031 | 2 | 55 |
| α-helix | 1037 | 1 | |
| β-strand | 1038 | 1 | 55 |
| α-helix | 1039 | 1 | |
| β-strand | 1043-1050 | 8 | 51 |
| β-strand | 1051-1052 | 2 | 54 |
| β-strand | 1053 | 1 | 47 |
| β-strand | 1062-1064 | 3 | 21 |
| α-helix | 1090-1099 | 10 | |
| α-helix | 1102-1106 | 5 | |
| α-helix | 1107-1111 | 5 | |
| β-strand | 1115-1121 | 7 | 11 |
| β-strand | 1127 | 1 | 11 |
| β-strand | 1129-1131 | 3 | 56 |
| β-strand | 1136-1138 | 3 | 56 |
| β-strand | 1148-1154 | 7 | 11 |
| α-helix | 1155-1166 | 12 | |
| β-strand | 1169 | 1 | 13 |
| β-strand | 1172 | 1 | 12 |
Chain c: 5 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-20 | 4 | |
| α-helix | 27-35 | 9 | |
| β-strand | 42-43 | 2 | 4 |
| α-helix | 46-72 | 27 | |
| β-strand | 77-78 | 2 | 5 |
| α-helix | 80-88 | 9 | |
| α-helix | 91-96 | 6 | |
| β-strand | 100-102 | 3 | 6 |
Chain C: 11 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-14 | 7 | 57 |
| β-strand | 18-24 | 7 | 57 |
| α-helix | 28-39 | 12 | |
| β-strand | 43-55 | 13 | 58 |
| α-helix | 61-69 | 9 | |
| β-strand | 73 | 1 | 59 |
| α-helix | 82-84 | 3 | |
| β-strand | 99-106 | 8 | 58 |
| α-helix | 112 | 1 | |
| β-strand | 113-116 | 4 | 60 |
| α-helix | 117-119 | 3 | |
| β-strand | 121-122 | 2 | 58 |
| β-strand | 129 | 1 | 59 |
| α-helix | 130-132 | 3 | |
| β-strand | 150-154 | 5 | 60 |
| β-strand | 159-170 | 12 | 58 |
| α-helix | 175-177 | 3 | |
| β-strand | 180-187 | 8 | 57 |
| α-helix | 201-203 | 3 | |
| α-helix | 205-207 | 3 | |
| α-helix | 219-221 | 3 | |
| β-strand | 229-236 | 8 | 57 |
| α-helix | 242-267 | 26 | |
Chains d and h: 4 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 36-46 | 11 | |
| β-strand | 51-52 | 2 | 5 |
| α-helix | 54-81 | 28 | |
| β-strand | 86-87 | 2 | 4 |
| α-helix | 89-99 | 11 | |
| α-helix | 103-121 | 19 | |
Chain E: 9 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 2-23 | 22 | |
| β-strand | 26-27 | 2 | 67 |
| α-helix | 30-33 | 4 | |
| α-helix | 37-43 | 7 | |
| β-strand | 47 | 1 | 68 |
| β-strand | 52 | 1 | 68 |
| β-strand | 60-64 | 5 | 67 |
| β-strand | 71-75 | 5 | 67 |
| β-strand | 81-82 | 2 | 69 |
| α-helix | 84-95 | 12 | |
| β-strand | 101-106 | 6 | 67 |
| β-strand | 109-110 | 2 | 69 |
| α-helix | 112-120 | 9 | |
| β-strand | 126-131 | 6 | 67 |
| α-helix | 134-136 | 3 | |
| β-strand | 147-151 | 5 | 70 |
| α-helix | 153-163 | 11 | |
| β-strand | 171-173 | 3 | 70 |
| α-helix | 178-183 | 6 | |
| α-helix | 185-186 | 2 | |
| β-strand | 190-197 | 8 | 70 |
| β-strand | 201-209 | 9 | 70 |
8 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| RNA | R | RNA | 10 | Drosophila melanogaster | |
| Template DNA | T | DNA | 174 | Drosophila melanogaster | |
| Non-template DNA | N | DNA | 163 | Drosophila melanogaster | |
| Histone H2A | c, g | protein | 106 | Drosophila melanogaster | P84051 (AlphaFold model) |
| Histone H2B | d, h | protein | 97 | Drosophila melanogaster | P02283 (AlphaFold model) |
| Histone H3 | a, e | protein | 100 | Drosophila melanogaster | P02299 (AlphaFold model) |
| Histone H4 | b, f | protein | 80 | Drosophila melanogaster | P84040 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit RPB1 | A | protein | 1470 | Drosophila melanogaster | P04052 |
| DNA-directed RNA polymerase II subunit RPB2 | B | protein | 1164 | Drosophila melanogaster | P08266 |
| DNA-directed RNA polymerase II subunit RPB3 | C | protein | 269 | Drosophila melanogaster | O97183 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC2 | F | protein | 84 | Drosophila melanogaster | Q24320 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 | H | protein | 147 | Drosophila melanogaster | Q9VNZ3 |
5 more molecules are not listed.
Sequence of entity 1 (R), FASTA
>9MU9_1 RNA (chains R)
AAAAAAAAAA
Sequence of entity 2 (T), FASTA
>9MU9_2 Template DNA (chains T)
ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAA
CGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAG
GCACGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTT
Sequence of entity 3 (N), FASTA
>9MU9_3 Non-template DNA (chains N)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACGTGCCTGGAGACTAGGGAGTA
ATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAG
CTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Sequence of entity 4 (c, g), FASTA
>9MU9_4 Histone H2A (chains c, g)
AKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN
KKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK
Sequence of entity 5 (d, h), FASTA
>9MU9_5 Histone H2B (chains d, h)
KKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRST
ITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sequence of entity 6 (a, e), FASTA
>9MU9_6 Histone H3 (chains a, e)
KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA
SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sequence of entity 7 (b, f), FASTA
>9MU9_7 Histone H4 (chains b, f)
RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT
AMDVVYALKRQGRTLYGFGG
Sequence of entity 8 (A), FASTA
>9MU9_8 DNA-directed RNA polymerase II subunit RPB1 (chains A)
SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR
CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV
MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT
GLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLP
VPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHV
ATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLR
IDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPK
SSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNA
DFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVF
ITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEED
EGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQT
VINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLR
QTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVE
GKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT
AETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNK
SFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGE
SKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQAN
ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS
LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKA
KNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRI
ELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDE
AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEW
LLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVN
YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGV
SENIIMGQLPKMGTGCFDLLLDAEKCRFGI
Sequence of entity 9 (B), FASTA
>9MU9_9 DNA-directed RNA polymerase II subunit RPB2 (chains B)
ENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEA
QHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT
KNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE
KVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSA
IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVV
QEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHR
LLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNL
ELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGR
DGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME
NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE
IRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEE
TVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK
QAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ
EDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDD
DGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLT
LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPH
AIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYN
GHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME
RDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVR
LPYAAKLLFQELMSMNIAPRLMVT
Sequence of entity 10 (C), FASTA
>9MU9_10 DNA-directed RNA polymerase II subunit RPB3 (chains C)
PYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSD
EFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLK
SSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA
GVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALK
PENIVVMGVQVLKNKLSNLQTQLSHESQN
Sequence of entity 11 (F), FASTA
>9MU9_11 DNA-directed RNA polymerases I, II, and III subunit RPABC2 (chains F)
GGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIP
IIIRRYLPDHSYEDWSIDELIMVD
Sequence of entity 12 (H), FASTA
>9MU9_12 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLA
TTLREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLL
MRLQGDANNLHGFEVDQHMYLLMKRLA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 8 |
Primary citation
Structural Characterization of Native RNA Polymerase II Transcription Complexes and Nucleosomes in Drosophila melanogaster. Venette-Smith, N.L., Vishwakarma, R.K., Venkatakrishnan, V. et al. Nat Commun (2026) 17. DOI 10.1038/s41467-026-75963-0 · PubMed
Other PDB entries of the same protein (UniProt P84051 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9ZQB 2.1 Å, Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 1
- 2NQB 2.3 Å, Drosophila Nucleosome Structure
- 9ZQC 2.37 Å, Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 2
- 2PYO 2.43 Å, Drosophila nucleosome core
- 8UX1 2.5 Å, Cryo-EM structure of Ran bound to RCC1 and the nucleosome core particle
- 8PP7 2.91 Å, human RYBP-PRC1 bound to mononucleosome
- 6DZT 2.99 Å, Cryo-EM structure of nucleosome in complex with a single chain antibody fragment
- 8PP6 3.18 Å, human RYBP-PRC1 bound to H2AK118ub1 nucleosome
- 9ZQA 3.28 Å, Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2
- 9MU4 3.29 Å, Structure of a native Drosophila melanogaster octameric nucleosome
- 9ZQ9 3.3 Å, Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1
- 4X23 3.5 Å, Crystal structure of cenp-C in complex with the nucleosome core particle
Browse structure collections
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