9Q7Q: ABCE1-eRF1-rnc-AMD1C
ABCE1-eRF1-rnc-AMD1C. Determined by electron microscopy at 2.86 Å resolution. Released 4 Mar 2026.
- Method
- Electron microscopy
- Resolution
- 2.86 Å
- Organism
- Oryctolagus cuniculus
- Chains
- 86
- Atoms
- 218,503
- Mol. weight
- 5559.01 kDa
- Ligands
- MG, ZN
- Released
- 4 Mar 2026
Explore 9Q7Q in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9Q7Q contains 565 α-helices and 599 β-strands across 79 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 2 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 88-92 | 5 | |
| α-helix | 101-104 | 4 | |
| β-strand | 106-108 | 3 | 1 |
| β-strand | 114-116 | 3 | 1 |
| β-strand | 120 | 1 | 2 |
| β-strand | 131 | 1 | 2 |
| β-strand | 133-134 | 2 | 3 |
| β-strand | 139-141 | 3 | 3 |
| β-strand | 146-148 | 3 | 3 |
Chain 6: 1 helix, 28 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-11 | 7 | 41 |
| β-strand | 18-22 | 5 | 42 |
| β-strand | 31-35 | 5 | 42 |
| β-strand | 40-44 | 5 | 42 |
| β-strand | 54-59 | 6 | 42 |
| β-strand | 66-71 | 6 | 43 |
| β-strand | 77-82 | 6 | 43 |
| β-strand | 87-91 | 5 | 43 |
| β-strand | 97-101 | 5 | 43 |
| β-strand | 108-113 | 6 | 44 |
| β-strand | 120-124 | 5 | 44 |
| β-strand | 129-132 | 4 | 44 |
| β-strand | 140-141 | 2 | 44 |
| β-strand | 154-156 | 3 | 45 |
| β-strand | 164-168 | 5 | 45 |
| β-strand | 174-178 | 5 | 45 |
| β-strand | 183-188 | 6 | 45 |
| β-strand | 195-200 | 6 | 46 |
| β-strand | 206-211 | 6 | 46 |
| β-strand | 215-220 | 6 | 46 |
| β-strand | 226-231 | 6 | 46 |
| β-strand | 239-241 | 3 | 47 |
| β-strand | 247-252 | 6 | 47 |
| β-strand | 255-260 | 6 | 47 |
| β-strand | 266-270 | 5 | 47 |
| α-helix | 282-285 | 4 | |
| β-strand | 286-291 | 6 | 41 |
| β-strand | 297-302 | 6 | 41 |
| β-strand | 307-312 | 6 | 41 |
Chain 9: 2 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 30-31 | 2 | 79 |
| α-helix | 33-35 | 3 | |
| β-strand | 38-39 | 2 | 79 |
| α-helix | 40-50 | 11 | |
| β-strand | 53 | 1 | 80 |
Chain a: 8 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-10 | 4 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-74 | 3 | 91 |
| α-helix | 75-77 | 3 | |
| α-helix | 79-81 | 3 | |
| α-helix | 84-92 | 9 | |
| β-strand | 97-98 | 2 | 167 |
| β-strand | 100-102 | 3 | 92 |
| α-helix | 103-106 | 4 | |
| β-strand | 110-112 | 3 | 91 |
| β-strand | 122-126 | 5 | 92 |
| β-strand | 128-129 | 2 | 91 |
| α-helix | 131-140 | 10 | |
| β-strand | 142-146 | 5 | 92 |
Chain A: 11 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 6-12 | 7 | |
| α-helix | 30-32 | 3 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-49 | 10 | 86 |
| α-helix | 50-51 | 2 | |
| β-strand | 58-64 | 7 | 86 |
| β-strand | 71-77 | 7 | 86 |
| β-strand | 79 | 1 | 87 |
| β-strand | 83 | 1 | 88 |
| β-strand | 87-91 | 5 | 86 |
| β-strand | 101-103 | 3 | 86 |
| α-helix | 104-106 | 3 | |
| α-helix | 108 | 1 | |
| β-strand | 112-114 | 3 | 86 |
| β-strand | 116 | 1 | 89 |
| β-strand | 126 | 1 | 89 |
| β-strand | 134-140 | 7 | 86 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 86 |
| β-strand | 155-159 | 5 | 86 |
| β-strand | 163-166 | 4 | 86 |
| β-strand | 169 | 1 | 87 |
| α-helix | 174-176 | 3 | |
| α-helix | 178-179 | 2 | |
| α-helix | 182-192 | 11 | |
| β-strand | 224-225 | 2 | 90 |
| β-strand | 237-238 | 2 | 90 |
Chain AA: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 84-88 | 5 | |
| α-helix | 90-91 | 2 | |
| α-helix | 93-96 | 4 | |
| α-helix | 98-101 | 4 | |
| α-helix | 104-111 | 8 | |
| α-helix | 112-116 | 5 | |
| α-helix | 124-127 | 4 | |
Chain AB: 24 helices, 33 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-10 | 6 | 68 |
| α-helix | 18-21 | 4 | |
| α-helix | 30-34 | 5 | |
| β-strand | 39-40 | 2 | 69 |
| β-strand | 49-50 | 2 | 69 |
| α-helix | 60-64 | 5 | |
| β-strand | 71-76 | 6 | 68 |
| α-helix | 77-79 | 3 | |
| β-strand | 85-86 | 2 | 70 |
| β-strand | 93-94 | 2 | 70 |
| β-strand | 105-109 | 5 | 71 |
| α-helix | 116-123 | 8 | |
| α-helix | 140-146 | 7 | |
| α-helix | 151-161 | 11 | |
| β-strand | 167-168 | 2 | 71 |
| α-helix | 173-175 | 3 | |
| β-strand | 183 | 1 | 72 |
| α-helix | 184-190 | 7 | |
| α-helix | 198-204 | 7 | |
| β-strand | 213 | 1 | 72 |
| α-helix | 219-232 | 14 | |
| β-strand | 238-241 | 4 | 71 |
| α-helix | 249-261 | 13 | |
| β-strand | 269-272 | 4 | 71 |
| α-helix | 276-282 | 7 | |
| β-strand | 286-288 | 3 | 71 |
| β-strand | 289-290 | 2 | 73 |
| β-strand | 296-297 | 2 | 70 |
| β-strand | 298-299 | 2 | 73 |
| β-strand | 303 | 1 | 71 |
| α-helix | 305-314 | 10 | |
| β-strand | 316 | 1 | 74 |
| β-strand | 323 | 1 | 74 |
| β-strand | 346 | 1 | 75 |
| β-strand | 355-357 | 3 | 76 |
| β-strand | 360-364 | 5 | 76 |
| β-strand | 370 | 1 | 75 |
| β-strand | 374-378 | 5 | 77 |
| α-helix | 385-393 | 9 | |
| β-strand | 409-411 | 3 | 77 |
| α-helix | 424-431 | 8 | |
| α-helix | 439-441 | 3 | |
| α-helix | 442-446 | 5 | |
| α-helix | 451-453 | 3 | |
| α-helix | 466-477 | 12 | |
| β-strand | 482-486 | 5 | 77 |
| α-helix | 494-511 | 18 | |
| β-strand | 515-518 | 4 | 77 |
| α-helix | 522-528 | 7 | |
| β-strand | 531-534 | 4 | 77 |
| β-strand | 535-537 | 3 | 76 |
| β-strand | 543-545 | 3 | 76 |
| β-strand | 549 | 1 | 77 |
| α-helix | 551-561 | 11 | |
| β-strand | 566-568 | 3 | 78 |
| β-strand | 575-577 | 3 | 78 |
| α-helix | 583-591 | 9 | |
Chain b: 6 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-18 | 7 | |
| α-helix | 37-48 | 12 | |
| α-helix | 49-51 | 3 | |
| α-helix | 55-73 | 19 | |
| α-helix | 91-100 | 10 | |
| α-helix | 106-116 | 11 | |
71 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Ribosomal protein S27a | 0 | protein | 156 | Oryctolagus cuniculus | G1SK22 (AlphaFold model) |
| AMD1 C-tail | 1 | protein | 32 | Oryctolagus cuniculus | |
| tRNA | 2 | RNA | 76 | Oryctolagus cuniculus | |
| mRNA | 4 | RNA | 11 | Oryctolagus cuniculus | |
| 28S rRNA | 5 | RNA | 7224 | Oryctolagus cuniculus | |
| RACK1 | 6 | protein | 317 | Oryctolagus cuniculus | G1SJB4 (AlphaFold model) |
| 5S rRNA | 7 | RNA | 120 | Oryctolagus cuniculus | |
| 5.8S rRNA | 8 | RNA | 156 | Oryctolagus cuniculus | |
| eS29 | 9 | protein | 56 | Oryctolagus cuniculus | G1U7M4 (AlphaFold model) |
| Ribosomal protein L8 | A | protein | 257 | Oryctolagus cuniculus | G1TT27 (AlphaFold model) |
| Ribosomal protein L3 | B | protein | 403 | Oryctolagus cuniculus | G1TL06 |
| 60S ribosomal protein L4 | C | protein | 413 | Oryctolagus cuniculus | G1SVW5 |
74 more molecules are not listed.
Sequence of entity 1 (0), FASTA
>9Q7Q_1 Ribosomal protein S27a (chains 0)
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Sequence of entity 2 (1), FASTA
>9Q7Q_2 AMD1 C-tail (chains 1)
XXXXXXXXXXXXSVIFLQVSSKIPHRQGFRPH
Sequence of entity 3 (2), FASTA
>9Q7Q_3 tRNA (chains 2)
GGCCAUGGUGGCGUAAGGGUAACGCGUCACACUAUGGAUGUGAAGAUUCUAGGUUCGACU
CCUGGCUGUUGCUCCA
Sequence of entity 4 (4), FASTA
>9Q7Q_4 mRNA (chains 4)
CCUCAUUAGGU
Sequence of entity 5 (5), FASTA
>9Q7Q_5 28S rRNA (chains 5)
UGGGAAGAGGCGCUGGGGGGGGGGCGGUGUGCCGCUGGCGGUGGUGACGGGGUGUGGGGC
GUGUGCUGGUCGCGCGUCUCCCCCUCGCCGUCUCGGGCUCCGCUCCCUUGGCUCCUCUCG
CCCCCUCCCCCCACUCCAUGCCGCUGCCACCUCCCCCCGCCCCUCGUCUUGUCUCUCCAU
CCCGGGGCCCGUCAUCCCUCUCUCCGUUGGAGGUCCCGGCCGCCCCGGAGCCACCUGGGC
GCGGAGGAGGGAGGAGGAGGUUGUCCCCUCCCACGCACGCCUCGGGGCCGUCGCCGUCCU
CCCGCCUUUCCCUCUCCCCCUACCCCUUCUGCCGCACUCCUCUCACCCCCAACUUCGUGG
CGUCCCGAGAGGGCCUCGAGGUCUGUGUGUGCUUGUCGUUGGCGAUGGGGGUUGUUGGGG
GUGGACGAGGGGGCGUGUGCCGUCGCUGCCGCGUGGCCGUGGCGGUCCGGGUUGGCCGGU
GGGGUGCGUCUGGGUGGUGCGUGUGCGCCUCUUGCCCUCCUCUUCCGUCUCCGGCGUCCG
UCUGAGCUCCCCGGUCCCCUGUGGCCGGGGGGCGGGCGUCGGGCGGGGGGGGGUGUCUGG
AGGUGGCCUCGGUGCCACCUCCCGUGCCUCAUCCGGUUUCCCCGCCGUCGUCCUCGCGCG
CGGCUUGCACCGCUUCCCCCUCCCCCCAACUUCUCCUCCCGCCUCUCCUCCAGGUACCUA
GCGCGUUCCGGCGCGGAGGUUUAAAGACCCCCGGGGGUGUACCGCCUGUCCGCCUCGGGG
UCGGGGCGGCGGGCCUGUGGGGAGUCGGGCGGGUCCCGUCCCGUCCGUCCUCCCCCUGAC
UCCGCUCCUCCUGCCCGGCCGAGGCGGGGGCGCUCGCUCGCGCGCCGCGCAGCCUCUCGC
GGCGGCUGCCGUCGGGAAAGGGGCGCCUGACCCGGCGGUGGUGUCGUGCCGCGAGAGGGG
UGCGCGCGGGGGCGUCGCGUCCUUGUCCCGUGCCGUGUCGGGGGGGGCGGGAGCCCCCUG
GGCGCCUGUGGGGUCGUCUGCGUGCUCGCGGGCGCGCCCCGCGUCGAAACCCACCGACCC
CUCCCAGAGUCUUUCAUUGUGUCCAGUCUACUGGCCUGCCCGAGGCAACCCCUUCUCUUC
UGUGGGUAGGGGAUGGUGCUGUGCCAGGCUUUCCCUUGACGGGAAAGAGCCAAAAAAAAC
CUCGUACGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGC
UGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCG
GCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUUGACGAUCAAUCGCCCCC
GGGUGGGUGCCUCGCGCCUCCCCGGGUUGCGCGGCUGGGGGUUUCUGAUCGCAGGGUCUG
UAUUUUUUGCCCUCCGUCCCCCUAAGUGCAGAUGGUGGCCCACUGGCCCCCGACUCCACC
CUCCCUCUCCUCGUCCUUUCCUCGUCUCGCGACUGUCCCGCGCGCCACCGGCCCCUUCCC
CCGUGCCGCCUCCCUCCUUCCCCGUCGCCCGCCCGCCCUCCCGUCCGGCAGGGGGCCUCC
CCACGCGCCCUAGUGGCGCGGAGGUGGUUGUGCCCCCCCCCGGCGGGAGAUGGCGUUCGG
GUGGCGGGGCGGGGAAGUGGAGGUGGGUGUGGGGGCGGGCAAGGCCGCCGGGGGGGCAUG
GUGCGAGGGGAGUGGGGGGGGCGUGUCUGCGGGCCGUGGUGCCGGCUGCCAGCGAGAGGU
GGUGAGCACGCGCGUGUGCGUUGGGGGGACCGAGGCCGCGGAAUCGGUAAGGGAAGCGCC
CCACGCCGUCUCGGCGUGGGUCCCCCCGGCCGCGGUCCCCGUCCCUCCGUCGGGAGAGCU
CGUUCGUGCUGUGCGCGGUCGCGGCGGGGGGAGAAGGGGGUGGUGGCGGCGCGGCGAGCG
CCGGGAGCGGGGUGGCAGGUGGCUGUCUCCUCCCCCGCCGGUGUGCGCCAGGUGCGCCUC
GGCGGGGGUCAUGGGGAGGCCCCGGGCCUCUCCGCCCCCCGCGCGUCUUGGCGCGCCGGC
CCAUGCAUCCAUCCGUCCUUCGCUCCCGCGGCGCCGGGGUCGGCUCGUGCCGAGGCCGGG
UCGGCGCGCGUGUGGUCGCGCCUCGGGGAUGCGUGCCCCGGCGGCGGCCCGCGGGACGCC
GCGGCGUCGUCCGUCCGUCGCCCGUCUACCCUCGGGGGGUGCUCCCGCCGCUCCGCCGGC
CCCGAGGAGACCCCGGCCUUGGCCGUUGGCGUGGCUCGUGUCUCCCGCUGCCCGCUCCUC
UGCCUCUCCCUGCCUGCCUGCCUUCCUUCCUUCGUCCCUCCCUCCCUCCGAGACGCGACC
UCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAAAAGAAAC
UAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCG
CCCCGCGGUGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGCCGCUCGU
GGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCGG
CCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAA
GCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUAC
CGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUAA
GAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGGUCC
GGCCGUGCCGGCGGUCUCGGCGGAUCUUUCCCGCUCCCCGUUCCUCCCGACCCCUCCACC
CGCUCCCCCUCCCCCGCCGGUCUUCUCCCUUCACGGGGGGUGGGUCGGCGGGUGCGGGGG
UGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGGACCGCCCCCCGGCCGGCGACCGGCC
GCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAA
GGCCCCGGCGGGGAAGGUGGCCCGGGGGGACGCCUCGCCGCCGUCGUCCGCGGCGGCGGC
GGGCGCGACCCCUCCCCGGGUGUUACAGCCCCGCCCCGGCAGCAGCAGCUCGCCGAAUCC
CGGGGCCGAGGGAGCGAGACCUGUGUCGCCGCGCUCUCCCCCCUCCCGGCGCUCCCCCCC
GCGGGGGUCCCCCGCGAGGGGGCUCCCCCCGCGGGGGCGCGCCGGUGUCGCCGCCCUCGC
GGGCGCGGCACGGGGGGGCCGGGCCGCCCCUCCCACGGCGCGACCGCUCUCCCGGCCCCC
GCCGCCGCCUCUUCGGGCGUGCGGCGGGGGUGGGGCGGACUGUCCCCAGUGCGCCCCGGG
CGUGUCACGCCGUCGGGCUCGGGGGAGAAGUCGGCCACGGCGCGUCGCGCGCCUCCGCGU
CCCCCCCUCGCCGUCUCCGGGCGGCGGGGGGGGGUUUCGGCGCGGUGUUCUCGGCGCGCG
CGCGCGAGCGAGCGCACGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAA
ACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGG
CGCAAUGAAGGUGAAGGCCGGCGGCGGCUUCCCGCCGUCGUCGGCCGAGGUGGGAUCCCG
AGGCCCUUCCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAG
GUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCG
AAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCG
ACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUU
UCCCUCAGGAUAGCUGGCGCUCUCGCAACCCCGCAGUUUUAUCCGGUAAAGCGAAUGAUU
AGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCC
CGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUGGUAA
GCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUC
AUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCG
GAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAAAAUGGAU
GGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCUGGCAGUCGGCAGAGCGAGAAAGAG
AGUGGAGCGCGCCGCGGGACUCCCCCCGCGGGGGUCCCCGGCCACCCCCCCCCCGCGGAC
GCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCC
CGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACU
UUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGU
CCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCAGC
CGAUCGAAAGGGAGUCGGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCG
AGGCGUCCAGUGCGGUAACGCGACCGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAG
UUCUCUUUUCUUUGUGAAGGGCAGGGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCC
CGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAA
AAUCCGGGGGAGAGGGUGUA
Sequence of entity 6 (6), FASTA
>9Q7Q_6 RACK1 (chains 6)
MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA
GYTDNLVRVWQVTIGTR
Sequence of entity 7 (7), FASTA
>9Q7Q_7 5S rRNA (chains 7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 8 (8), FASTA
>9Q7Q_8 5.8S rRNA (chains 8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 9 (9), FASTA
>9Q7Q_9 eS29 (chains 9)
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sequence of entity 10 (A), FASTA
>9Q7Q_10 Ribosomal protein L8 (chains A)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 11 (B), FASTA
>9Q7Q_11 Ribosomal protein L3 (chains B)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 12 (C), FASTA
>9Q7Q_12 60S ribosomal protein L4 (chains C)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKL
APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAA
KSDPKEAPAKKKPVVGKKKKPVVGRKAAAAKKPAADKKAADKRAGPEDKKPAA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 291 |
| ZN | Zinc ion | Zn | 6 |
Primary citation
Mechanism of ribosome stalling by the AMD1 C-terminal tail arrest peptide. Maldosevic, E., Boiocchi, F.S., Swirski, M.I. et al. Sci Adv (2026) 12:eaec5067-eaec5067. DOI 10.1126/sciadv.aec5067 · PubMed
Other PDB entries of the same protein (UniProt G1SK22 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7O7Y 2.2 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 7O7Z 2.4 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
- 9QQA 2.8 Å, Ternary complex of translating ribosome, NAC and NMT1
- 9NDP 2.82 Å, Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- 11HG 2.9 Å, Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- 11JJ 2.9 Å, Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
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