9TV2: 60S ribosomal protein L8

Name: PDB 9TV2: 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
Published: 2026-07-01
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: ribosome

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV. Determined by electron microscopy at 2.1 Å resolution. Released 1 Jul 2026.

Method: Electron microscopy
Resolution: 2.1 Å
Organism: Homo sapiens
Chains: 78
Atoms: 184,476
Mol. weight: 3759.35 kDa
Ligands: ZN, MG
Released: 1 Jul 2026

Explore 9TV2 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9TV2 contains 559 α-helices and 516 β-strands across 73 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain La: 10 helices, 7 β-strands

Element	Residues	Length	Sheet
α-helix	3-5	3
α-helix	7-11	5
α-helix	42-48	7
α-helix	65-68	4
β-strand	72-74	3	13
α-helix	75-81	7
α-helix	84-92	9
α-helix	97	1
β-strand	98	1	86
α-helix	99	1
β-strand	100-102	3	14
α-helix	103-106	4
β-strand	110-112	3	13
β-strand	123-126	4	14
β-strand	128-129	2	13
α-helix	131-139	9
β-strand	143-146	4	14

Chain LA: 13 helices, 17 β-strands

Element	Residues	Length	Sheet
α-helix	6-9	4
α-helix	10-12	3
α-helix	14-16	3
α-helix	30-32	3
α-helix	34-38	5
β-strand	41-49	9	17
β-strand	58-64	7	17
β-strand	71-77	7	17
α-helix	78	1
β-strand	79	1	18
β-strand	83	1	19
β-strand	87-90	4	17
β-strand	101-103	3	17
α-helix	104-106	3
α-helix	108	1
β-strand	112-114	3	17
β-strand	116	1	20
β-strand	126	1	20
β-strand	134-140	7	17
β-strand	145-149	5	17
β-strand	155-159	5	17
β-strand	163-166	4	17
β-strand	169	1	18
α-helix	174-176	3
α-helix	182-190	9
α-helix	201-203	3
α-helix	206-208	3
β-strand	224-225	2	21
α-helix	229-230	2
β-strand	237-238	2	21

Chain Lb: 6 helices, 0 β-strands

Element	Residues	Length
α-helix	12-16	5
α-helix	22-25	4
α-helix	37-48	12
α-helix	54-60	7
α-helix	92-99	8
α-helix	106-112	7

Chain LB: 23 helices, 22 β-strands

Element	Residues	Length	Sheet
α-helix	9-10	2
α-helix	14-16	3
α-helix	20-22	3
α-helix	27-28	2
α-helix	32-35	4
α-helix	40-41	2
β-strand	42-43	2	25
β-strand	45-59	15	26
β-strand	60	1	27
β-strand	68	1	27
β-strand	71-80	10	26
α-helix	82-83	2
β-strand	84-93	10	28
β-strand	100-106	7	28
α-helix	112-115	4
α-helix	116-118	3
α-helix	131-134	4
α-helix	135-137	3
α-helix	140-156	17
β-strand	159-165	7	28
α-helix	168-170	3
α-helix	178-179	2
β-strand	180-184	5	28
β-strand	185-186	2	25
α-helix	190-199	10
β-strand	204-205	2	28
α-helix	207-209	3
β-strand	216-222	7	26
α-helix	223-224	2
β-strand	225-229	5	29
α-helix	231-235	5
α-helix	237-241	5
β-strand	270-273	4	29
β-strand	276-288	13	26
α-helix	289-291	3
β-strand	292	1	30
β-strand	299	1	30
α-helix	316	1
β-strand	320	1	31
β-strand	324	1	31
β-strand	330-334	5	26
β-strand	344-349	6	26
α-helix	357-360	4
β-strand	365-368	4	26
α-helix	382-389	8

Chain Lc: 4 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	16-24	9
β-strand	26-29	4	32
α-helix	31-40	10
β-strand	45-48	4	32
α-helix	54-67	14
β-strand	70-73	4	32
α-helix	78-84	7
β-strand	93-98	6	32

Chain LC: 27 helices, 11 β-strands

Element	Residues	Length	Sheet
α-helix	6	1
β-strand	7-11	5	35
β-strand	17-23	7	35
α-helix	24-25	2
α-helix	26-29	4
α-helix	34-44	11
α-helix	45-48	4
α-helix	49-51	3
β-strand	65-66	2	36
β-strand	77-78	2	36
β-strand	90	1	36
α-helix	100-101	2
α-helix	117-130	14
α-helix	134-139	6
β-strand	152-154	3	35
α-helix	156-160	5
α-helix	164-173	10
α-helix	177-186	10
β-strand	188-189	2	37
α-helix	190-191	2
α-helix	193-196	4
β-strand	201-202	2	37
β-strand	208-211	4	35
α-helix	217-221	5
β-strand	228-231	4	35
α-helix	232-234	3
α-helix	237-240	4
α-helix	242-244	3
β-strand	250-253	4	35
α-helix	254-258	5
α-helix	260-264	5
α-helix	279-282	4
α-helix	289-294	6
α-helix	296-299	4
α-helix	302-305	4
α-helix	311-314	4
α-helix	322-328	7
α-helix	331-353	23

Chain Ld: 4 helices, 5 β-strands

Element	Residues	Length	Sheet
β-strand	21-28	8	38
α-helix	29-32	4
α-helix	38-40	3
α-helix	41-57	17
β-strand	61-64	4	38
α-helix	66-72	7
β-strand	83-92	10	38
β-strand	102-108	7	38
β-strand	120	1	38

Chain LD: 20 helices, 8 β-strands

Element	Residues	Length	Sheet
α-helix	10-15	6
α-helix	18-20	3
α-helix	21-24	4
α-helix	30-37	8
α-helix	38-40	3
α-helix	41-43	3
β-strand	50-55	6	40
β-strand	60-66	7	40
β-strand	73-79	7	40
α-helix	80-82	3
α-helix	84-86	3
α-helix	95-112	18
α-helix	134-135	2
α-helix	139-142	4
β-strand	143	1	41
β-strand	145-147	3	40
α-helix	158-168	11
β-strand	172	1	41
α-helix	177-179	3
β-strand	183-184	2	42
β-strand	189-190	2	42
α-helix	192-199	8
α-helix	202-214	13
α-helix	216-222	7
α-helix	224-228	5
α-helix	236-249	14
α-helix	268-272	5
α-helix	273-287	15

65 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
28S rRNA	L5	RNA	5054	Homo sapiens
5S rRNA	L7	RNA	121	Homo sapiens
5.8S rRNA	L8	RNA	156	Homo sapiens
60S ribosomal protein L8	LA	protein	257	Homo sapiens	P62917 (AlphaFold model)
Large ribosomal subunit protein uL3	LB	protein	403	Homo sapiens	P39023 (AlphaFold model)
60S ribosomal protein L4	LC	protein	427	Homo sapiens	P36578 (AlphaFold model)
60S ribosomal protein L5	LD	protein	297	Homo sapiens	P46777 (AlphaFold model)
Large ribosomal subunit protein eL6	LE	protein	288	Homo sapiens	Q02878
Large ribosomal subunit protein uL30	LF	protein	248	Homo sapiens	P18124
60S ribosomal protein L7a	LG	protein	266	Homo sapiens	P62424
60S ribosomal protein L9	LH	protein	192	Homo sapiens	P32969
60S ribosomal protein L10-like	LI	protein	214	Homo sapiens	Q96L21

66 more molecules are not listed.

Sequence of entity 1 (L5), FASTA

>9TV2_1 28S rRNA (chains L5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGC
CGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG
GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCA
GCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAA
CAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAA
CCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGC
GGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCCCCCCGUUCCUCCCGACCCCU
CCACCCGCCCUCCCUUCCCCCGCCGCCCCUCCUCCUCCUCCCCGGAGGGGGCGGGCUCCG
GCGGGUGCGGGGGUGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGGACCGUCCCCCGA
CCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCG
GGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGGGGGCCCCGUCCGUCCGUCCGUC
CGUCCUCCUCCUCCCCCGUCUCCGCCCCCCGGCCCCGCGUCCUCCCUCGGGAGGGCGCGC
GGGUCGGGGCGGCGGCGGCGGUGGCGGCGGCGGCGGCGGCGGCGGGACCGAAACCCCCCC
CGAGUGUUACAGCCCCCGCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGAGGGA
GCGGUCGCCGCGCUCUCCCUCUCCCCCCUCCCGGCGCCCACCCCCGCGGGGAAUCCCCCG
CGAGGGGGGUCUCCCCCGCGGGGGCGCGCCGGCGUCUCGGGGGGCCGGGCCACGGCUCCC
ACGGCGCCGGCGCGACCGCUCUCCCACCCCUCCUCCCCGCGCCCCCGCCCCGGCGACGGG
GGGGGUGCCGCGCGCGGGUCGGGGGGCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCCGC
CGUCGGGCCCGGGCCCGGGGGGAGGUUGGCUCCACGCCACGCGCGCGUCCCCCGAAGAGC
GGCGCGGCGAGCGCACGGGGUCGGCGGCGCGGUCGGCUACCCACCCGACCCGUCUUGAAA
CACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUGGGACGAAAGCCGCCGUGGC
GCAAUGAAGGUGAAGUGAAGGCCGGCGCGCUCGCGAGGUGGGAUCCCGAGGCGAGGCCUC
UCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAG
CGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAA
ACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGUAUAG
GGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUA
GCUGGCGCUCUCGUCUCGCAGACCCGACGCACCCCCGCAGUUUUAUCCGGUAAAGCGAAU
GAUUAGAGGAGAGGUCUUGGGGCCGAAACGAUCCUAUUCUCAAACUUUAAAUGGGUAAGA
AGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUG
GUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGAC
GCUCAUCAGACCCCACAAAAGGUGUUGGUUGAUUUGAUAUAGACAGCAGGACGGUGGCCA
UGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGUCAACUAGCCCUGAAAAU
GGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCCAGUCGAGAGUGG
ACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCGCGUGUGGUGUGCGUCGGAGGGCGGCGG
CGGCGGCGGGGGUGUGUGGGGUCCUCCCCCGCCCCCCCCCCACGCCUCCUCCCCUCCUCC
CGCCCACGCCCCGCUCCCCGCCCCCGGAGCGGACGCUACGCCGCGACGAGUAGGAGGGCC
GCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAU
CUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUC
CAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCG
GAAGCCGUUCUGAAGGGACGGGCGAUGGCCUCCGUGAUCGAAAGGGAGUCGGGUUCAGAU
CCCCGAAUCCGGACCGGCGGAGAUGGGCCGGAGAUGGGGUCCAGUGCGGUAACGCGACCG
AUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAGGG
CGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGAAAGC
GGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGGAAAUCUC
GCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGUUG
GAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUGGC
UCUAAGGGGGCUCUAAGGGCUGGGUCGGUCGGGCUGGGGCGCGAAGCGGGGCUGGGCGCG
CGCCGCGGCUGGACGAGGCGCCGCCGCCCCCCCCACGCCCGGGGCACCCCCCUCGCGGCC
CUCCCCCGCCCCACCCCGCGCGCGCCGCUCGCUCCCUCCCCACCCCGCGCCCUCUCUCUC
UCUCUCUCCCCCGCUCCCCGUCCUCCCCCCUCCCCGGGGGAGCGCCGCGUGGGGGCGGCG
GCGGGGGGAGAAGGGUCGGGGCGGCAGGGGCCGGCGGCGGCCGCCGCGGGGCCCCGGCGG
CGGGGGCACGGUCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGGCGGCGA
CUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCGCCCCAGCUGCGGCGGGCGUCGCGGCC
GCCCCCGGGGAGCCCGGCGGGCGCCGGCGCGNCCCCCCCCCCACCCCACGUCUCGUCGCG
CGCGCGUCCGCUGGGGGCGGGGAGCGGUCGGGCGGCGGCGGUCGGCGGGCGGCGGGGCGG
GGCGGUUCGUCCCCCCGCCCUACCCCCCCGGCCCCGUCCGCCCCCCGUUCCCCCCUCCUC
CUCGGCGCGCGGCGGCGGCGGCGGGCGGCGGAGGGGCCGCGGGCCGGUCCCCCCCGCCGG
GUCCGCCCCCGGGGCCGCGGUUCCGCGCGGCGCCUCGCCUCGGCCGGCGACUUAGAACUG
GUGCGGACCAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGCG
GGUGUUGACGCGAUGUGAUUUCUGCCCAGUGCUCUUCUGGUCAAAGUGAAGAAAUUCAAU
GAAGCGCGGGUAAACGGCGGGAGGGUAAACGGCGGUCUUAAGGUAGCCAAAUGCCUCGUC
AUCUAAUUAGUGACGCGCAUGAAXGGAUGAACGAGAUUCCCACUGUCCCUACCUACUAUC
CAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGU
UGAGCUUGACUCUAGUCUGGCACGGUGAAGUCUGGCACGGUGAAGAGACAUGAGAGGUGU
AGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGG
UCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUUCACUGACCCGGUGAGGCGGGGGC
CGGUGAGGCGGGGGGGCGAGGCUUCUGGCGCCAAGCGCCCGGGCGCCAAGCGGCCGGGCG
CGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCGGUACACCUGUCAAA
CGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACGAGCUCCUCCCGUGGAGCAGAA
GGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCGUGAAAGCGGGGCCU
CACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAAAGUUACCACAGGGA
UAACUGGCUUGUGGCGGCCAAGCGUGUGUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCG
GCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGUUCACCCACUAAUAG
GGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAUGU
GUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUUCAGACAUUUGGUGU
AUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGGAUUAUGACUGAACG
CCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUACCAGAGCGCCCGAUACCCUCGGUUG
GCCUCGGAUAGCCGGUCCUCGGAUAGCCGGUCCCCCGCCUGUCCCCGCCGGCGGGCCGCC
CCCCCCUCCACGCGCCCCGCGCGCGCGGGAGGGCGCGUGCCCCGCCGGUCCGGUGCGGAG
UGCCCUUCGUCCUGGGAAACCUUCGUCCUCCGGAAAGGCGGCCGGCUGGAAGCCCGUCAC
GCACCGCACGUUCGUGGGGCCGCACGUGCUAAACCAUUCGUAGACGACCUGCUUCUGGGU
CGGGGUUUCGUACGUAGCAG

Sequence of entity 2 (L7), FASTA

>9TV2_2 5S rRNA (chains L7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGACGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
U

Sequence of entity 3 (L8), FASTA

>9TV2_3 5.8S rRNA (chains L8)
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGA
AUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGG
GUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU

Sequence of entity 4 (LA), FASTA

>9TV2_4 60S ribosomal protein L8 (chains LA)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN

Sequence of entity 5 (LB), FASTA

>9TV2_5 Large ribosomal subunit protein uL3 (chains LB)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA

Sequence of entity 6 (LC), FASTA

>9TV2_6 60S ribosomal protein L4 (chains LC)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
EEKKPAA

Sequence of entity 7 (LD), FASTA

>9TV2_7 60S ribosomal protein L5 (chains LD)
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY
KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES

Sequence of entity 8 (LE), FASTA

>9TV2_8 Large ribosomal subunit protein eL6 (chains LE)
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF

Sequence of entity 9 (LF), FASTA

>9TV2_9 Large ribosomal subunit protein uL30 (chains LF)
MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
NRLIRRMN

Sequence of entity 10 (LG), FASTA

>9TV2_10 60S ribosomal protein L7a (chains LG)
MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
VLGPKSVARIAKLEKAKAKELATKLG

Sequence of entity 11 (LH), FASTA

>9TV2_11 60S ribosomal protein L9 (chains LH)
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQADE

Sequence of entity 12 (LI), FASTA

>9TV2_12 60S ribosomal protein L10-like (chains LI)
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS

Ligands and cofactors

ID	Name	Formula	Copies
ZN	Zinc ion	Zn	7
MG	Magnesium ion	Mg	163

Water and common crystallization additives (NA, K) are not listed.

Primary citation

An Epstein-Barr virus-encoded snoRNA directs 2'-O-methylation of human rRNAs to control translation and the viral lytic switch. Dan, Y., Jady, B.E., Halperin, Y. et al. Cell Rep (2026) 45:117814-117814. DOI 10.1016/j.celrep.2026.117814 · PubMed

Other PDB entries of the same protein (UniProt P62917 (AlphaFold model), which also has an AlphaFold model), best resolution first:

8A3D 1.67 Å, Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
29IW 1.77 Å, Human monosomes with bound toxin NT-2, focus on 60S subunit. Cells treated with NT-2.
8QYX 1.78 Å, Human 60S ribosomal subunit
8QOI 1.9 Å, Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical…
9O3W 1.9 Å, Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
8YOO 2.0 Å, Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
9C3H 2.0 Å, Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
29IZ 2.08 Å, Dormant 80S:eEF2:SERBP1:tRNA complex from human cells treated with toxin NT-2
9I2D 2.19 Å, NMT1-NAC bound human RNC with 10 amino acid ARF1-linker
9PBE 2.19 Å, In situ human 80S ribosome (composite map)
29IX 2.2 Å, Human monosomes with bound toxin NT-2, focus on 60S subunit. NT-2 added to purified…
4Y3O 2.2 Å, Crystal structure of Ribosomal oxygenase NO66 in complex with substrate Rpl8 peptide and…

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