9YND: Cytoplasmic dynein 1 heavy chain 1
Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B and LIS1. Determined by electron microscopy at 4.26 Å resolution. Released 28 Jan 2026.
- Method
- Electron microscopy
- Resolution
- 4.26 Å
- Organism
- Homo sapiens
- Chains
- 9
- Atoms
- 32,118
- Mol. weight
- 1148.88 kDa
- Ligands
- ADP, ATP, MG
- Released
- 28 Jan 2026
Explore 9YND in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9YND contains 178 α-helices and 130 β-strands across 9 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 159 helices, 72 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 1356-1371 | 16 | |
| α-helix | 1381-1389 | 9 | |
| α-helix | 1390-1394 | 5 | |
| α-helix | 1410-1415 | 6 | |
| α-helix | 1431-1436 | 6 | |
| α-helix | 1439-1472 | 34 | |
| β-strand | 1474 | 1 | 1 |
| β-strand | 1477-1480 | 4 | 2 |
| β-strand | 1484-1487 | 4 | 2 |
| α-helix | 1490-1509 | 20 | |
| α-helix | 1517-1553 | 37 | |
| α-helix | 1556-1560 | 5 | |
| α-helix | 1562-1584 | 23 | |
| β-strand | 1587 | 1 | 1 |
| α-helix | 1588-1593 | 6 | |
| α-helix | 1597-1613 | 17 | |
| α-helix | 1616-1625 | 10 | |
| α-helix | 1627-1631 | 5 | |
| α-helix | 1634-1642 | 9 | |
| α-helix | 1647-1652 | 6 | |
| α-helix | 1654-1656 | 3 | |
| β-strand | 1661-1666 | 6 | 3 |
| β-strand | 1672-1678 | 7 | 3 |
| β-strand | 1683-1691 | 9 | 3 |
| α-helix | 1698-1727 | 30 | |
| α-helix | 1735-1742 | 8 | |
| α-helix | 1747-1768 | 22 | |
| α-helix | 1778-1795 | 18 | |
| α-helix | 1802-1828 | 27 | |
| α-helix | 1836-1839 | 4 | |
| β-strand | 1843-1846 | 4 | 4 |
| α-helix | 1853-1855 | 3 | |
| β-strand | 1857-1861 | 5 | 4 |
| β-strand | 1864-1867 | 4 | 4 |
| α-helix | 1878-1880 | 3 | |
| α-helix | 1883-1897 | 15 | |
| β-strand | 1901-1905 | 5 | 5 |
| α-helix | 1914-1923 | 10 | |
| β-strand | 1927-1931 | 5 | 5 |
| α-helix | 1938-1951 | 14 | |
| β-strand | 1954-1958 | 5 | 5 |
| α-helix | 1960-1962 | 3 | |
| α-helix | 1965-1986 | 22 | |
| α-helix | 1996-1997 | 2 | |
| β-strand | 1998-2001 | 4 | 6 |
| β-strand | 2004-2007 | 4 | 6 |
| β-strand | 2014-2016 | 3 | 5 |
| β-strand | 2018 | 1 | 5 |
| α-helix | 2026-2029 | 4 | |
| α-helix | 2030-2033 | 4 | |
| β-strand | 2036-2040 | 5 | 5 |
| α-helix | 2046-2056 | 11 | |
| α-helix | 2062-2079 | 18 | |
| α-helix | 2081-2082 | 2 | |
| α-helix | 2090-2117 | 28 | |
| α-helix | 2124-2129 | 6 | |
| α-helix | 2133-2148 | 16 | |
| α-helix | 2154-2164 | 11 | |
| α-helix | 2176-2188 | 13 | |
| α-helix | 2191-2193 | 3 | |
| α-helix | 2201-2216 | 16 | |
| β-strand | 2219-2223 | 5 | 7 |
| α-helix | 2230-2245 | 16 | |
| β-strand | 2249-2254 | 6 | 7 |
| α-helix | 2256-2258 | 3 | |
| α-helix | 2261-2265 | 5 | |
| β-strand | 2266-2268 | 3 | 8 |
| β-strand | 2275-2277 | 3 | 8 |
| α-helix | 2279-2289 | 11 | |
| α-helix | 2294-2296 | 3 | |
| β-strand | 2298-2304 | 7 | 7 |
| α-helix | 2313-2315 | 3 | |
| α-helix | 2316-2319 | 4 | |
| β-strand | 2324-2326 | 3 | 9 |
| β-strand | 2332-2334 | 3 | 9 |
| α-helix | 2335-2336 | 2 | |
| β-strand | 2339-2344 | 6 | 7 |
| α-helix | 2353-2357 | 5 | |
| β-strand | 2360-2363 | 4 | 7 |
| α-helix | 2371-2384 | 14 | |
| α-helix | 2411-2422 | 12 | |
| α-helix | 2432-2442 | 11 | |
| α-helix | 2451-2475 | 25 | |
| α-helix | 2483-2503 | 21 | |
| α-helix | 2508-2521 | 14 | |
| α-helix | 2534-2536 | 3 | |
| β-strand | 2537-2539 | 3 | 10 |
| α-helix | 2540 | 1 | |
| β-strand | 2545-2547 | 3 | 10 |
| α-helix | 2548-2551 | 4 | |
| α-helix | 2559-2561 | 3 | |
| α-helix | 2572-2586 | 15 | |
| β-strand | 2591-2594 | 4 | 11 |
| α-helix | 2601-2610 | 10 | |
| β-strand | 2615-2620 | 6 | 11 |
| α-helix | 2629-2638 | 10 | |
| β-strand | 2639-2644 | 6 | 12 |
| β-strand | 2647-2652 | 6 | 12 |
| β-strand | 2658-2663 | 6 | 11 |
| α-helix | 2678-2689 | 12 | |
| β-strand | 2691-2694 | 4 | 12 |
| β-strand | 2699-2703 | 5 | 12 |
| β-strand | 2706-2712 | 7 | 11 |
| α-helix | 2722-2724 | 3 | |
| α-helix | 2725-2728 | 4 | |
| β-strand | 2733-2735 | 3 | 11 |
| α-helix | 2737-2740 | 4 | |
| α-helix | 2741-2756 | 16 | |
| α-helix | 2760-2765 | 6 | |
| α-helix | 2766-2783 | 18 | |
| α-helix | 2796-2810 | 15 | |
| α-helix | 2818-2833 | 16 | |
| α-helix | 2840-2857 | 18 | |
| α-helix | 2863-2866 | 4 | |
| β-strand | 2873-2874 | 2 | 13 |
| β-strand | 2882-2883 | 2 | 13 |
| α-helix | 2886-2903 | 18 | |
| β-strand | 2906 | 1 | 14 |
| α-helix | 2913-2926 | 14 | |
| β-strand | 2932-2937 | 6 | 15 |
| α-helix | 2943-2954 | 12 | |
| α-helix | 2956 | 1 | |
| β-strand | 2957-2960 | 4 | 15 |
| α-helix | 2969-2985 | 17 | |
| β-strand | 2990-2995 | 6 | 15 |
| α-helix | 2996-2998 | 3 | |
| α-helix | 3002-3014 | 13 | |
| α-helix | 3024-3040 | 17 | |
| α-helix | 3047-3061 | 15 | |
| β-strand | 3063-3068 | 6 | 15 |
| α-helix | 3072-3081 | 10 | |
| α-helix | 3083-3087 | 5 | |
| β-strand | 3090-3095 | 6 | 15 |
| α-helix | 3099-3111 | 13 | |
| α-helix | 3139-3163 | 25 | |
| α-helix | 3173-3251 | 79 | |
| α-helix | 3440-3481 | 42 | |
| α-helix | 3483-3494 | 12 | |
| α-helix | 3496-3501 | 6 | |
| α-helix | 3503-3516 | 14 | |
| α-helix | 3522-3538 | 17 | |
| α-helix | 3549-3553 | 5 | |
| α-helix | 3556-3564 | 9 | |
| α-helix | 3571-3579 | 9 | |
| α-helix | 3586 | 1 | |
| β-strand | 3587-3590 | 4 | 16 |
| α-helix | 3595-3603 | 9 | |
| β-strand | 3610-3613 | 4 | 16 |
| α-helix | 3619-3629 | 11 | |
| β-strand | 3633-3636 | 4 | 16 |
| α-helix | 3638-3640 | 3 | |
| α-helix | 3646-3650 | 5 | |
| β-strand | 3653 | 1 | 14 |
| β-strand | 3654 | 1 | 17 |
| β-strand | 3661 | 1 | 17 |
| β-strand | 3662-3664 | 3 | 18 |
| β-strand | 3667-3669 | 3 | 18 |
| β-strand | 3677-3681 | 5 | 16 |
| α-helix | 3690-3695 | 6 | |
| β-strand | 3697-3700 | 4 | 16 |
| α-helix | 3702-3704 | 3 | |
| α-helix | 3705-3720 | 16 | |
| α-helix | 3722-3754 | 33 | |
| α-helix | 3760-3762 | 3 | |
| α-helix | 3764-3798 | 35 | |
| α-helix | 3799-3801 | 3 | |
| α-helix | 3802-3816 | 15 | |
| α-helix | 3817-3820 | 4 | |
| α-helix | 3829-3841 | 13 | |
| α-helix | 3844-3846 | 3 | |
| α-helix | 3852-3873 | 22 | |
| α-helix | 3877-3893 | 17 | |
| α-helix | 3902-3910 | 9 | |
| α-helix | 3929-3938 | 10 | |
| α-helix | 3942-3944 | 3 | |
| α-helix | 3947-3953 | 7 | |
| α-helix | 3957-3961 | 5 | |
| α-helix | 3966-3969 | 4 | |
| α-helix | 3979-3981 | 3 | |
| α-helix | 3982-3996 | 15 | |
| α-helix | 3998-4000 | 3 | |
| α-helix | 4001-4013 | 13 | |
| α-helix | 4015-4017 | 3 | |
| α-helix | 4019-4022 | 4 | |
| α-helix | 4024-4025 | 2 | |
| α-helix | 4027-4029 | 3 | |
| α-helix | 4030-4034 | 5 | |
| β-strand | 4041-4045 | 5 | 19 |
| α-helix | 4052-4061 | 10 | |
| β-strand | 4066-4070 | 5 | 19 |
| α-helix | 4074-4090 | 17 | |
| β-strand | 4093-4097 | 5 | 19 |
| α-helix | 4099-4101 | 3 | |
| α-helix | 4103-4114 | 12 | |
| β-strand | 4123-4129 | 7 | 19 |
| α-helix | 4136-4141 | 6 | |
| β-strand | 4143-4147 | 5 | 19 |
| α-helix | 4153-4163 | 11 | |
| α-helix | 4166-4169 | 4 | |
| α-helix | 4176-4192 | 17 | |
| α-helix | 4197-4200 | 4 | |
| α-helix | 4209-4226 | 18 | |
| α-helix | 4235-4237 | 3 | |
| α-helix | 4240-4246 | 7 | |
| α-helix | 4247-4251 | 5 | |
| α-helix | 4259-4272 | 14 | |
| α-helix | 4275-4278 | 4 | |
| β-strand | 4283-4285 | 3 | 20 |
| β-strand | 4294-4295 | 2 | 20 |
| α-helix | 4296-4297 | 2 | |
| α-helix | 4302-4311 | 10 | |
| α-helix | 4327-4346 | 20 | |
| α-helix | 4375-4390 | 16 | |
| α-helix | 4402-4405 | 4 | |
| α-helix | 4408-4438 | 31 | |
| α-helix | 4443-4445 | 3 | |
| α-helix | 4446-4456 | 11 | |
| α-helix | 4475-4496 | 22 | |
| α-helix | 4501-4506 | 6 | |
| β-strand | 4509-4510 | 2 | 21 |
| α-helix | 4517-4532 | 16 | |
| α-helix | 4536-4538 | 3 | |
| β-strand | 4539-4546 | 8 | 21 |
| β-strand | 4557-4561 | 5 | 21 |
| β-strand | 4564-4571 | 8 | 22 |
| β-strand | 4574-4584 | 11 | 22 |
| β-strand | 4587-4594 | 8 | 21 |
| β-strand | 4604-4610 | 7 | 22 |
| β-strand | 4618-4626 | 9 | 22 |
| α-helix | 4632-4637 | 6 | |
| β-strand | 4642-4643 | 2 | 22 |
Chain B: 3 helices, 28 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 96-104 | 9 | 23 |
| β-strand | 111-116 | 6 | 24 |
| β-strand | 123-127 | 5 | 24 |
| β-strand | 131-136 | 6 | 24 |
| β-strand | 141-147 | 7 | 24 |
| β-strand | 153-158 | 6 | 25 |
| β-strand | 164-169 | 6 | 25 |
| β-strand | 174-178 | 5 | 25 |
| β-strand | 183-188 | 6 | 25 |
| β-strand | 195-200 | 6 | 26 |
| β-strand | 206-211 | 6 | 26 |
| β-strand | 215-220 | 6 | 26 |
| β-strand | 226-231 | 6 | 26 |
| β-strand | 237-242 | 6 | 27 |
| β-strand | 248-253 | 6 | 27 |
| β-strand | 258-262 | 5 | 27 |
| β-strand | 268-272 | 5 | 27 |
| β-strand | 279-284 | 6 | 28 |
| α-helix | 285-286 | 2 | |
| α-helix | 289-296 | 8 | |
| α-helix | 299-302 | 4 | |
| β-strand | 310-315 | 6 | 28 |
| β-strand | 319-324 | 6 | 28 |
| β-strand | 329-335 | 7 | 28 |
| β-strand | 341-346 | 6 | 29 |
| β-strand | 353-357 | 5 | 29 |
| β-strand | 361-366 | 6 | 29 |
| β-strand | 371-376 | 6 | 29 |
| β-strand | 383-388 | 6 | 23 |
| β-strand | 394-399 | 6 | 23 |
| β-strand | 404-409 | 6 | 23 |
Chain C: 2 helices, 30 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 91-93 | 3 | |
| β-strand | 96 | 1 | 30 |
| β-strand | 102-105 | 4 | 31 |
| β-strand | 111-116 | 6 | 32 |
| β-strand | 123-127 | 5 | 32 |
| β-strand | 132-136 | 5 | 32 |
| β-strand | 141-146 | 6 | 32 |
| β-strand | 153-158 | 6 | 33 |
| β-strand | 164-169 | 6 | 33 |
| β-strand | 174-178 | 5 | 33 |
| β-strand | 183-188 | 6 | 33 |
| β-strand | 197-199 | 3 | 34 |
| β-strand | 206-210 | 5 | 34 |
| β-strand | 215-220 | 6 | 34 |
| β-strand | 225-231 | 7 | 34 |
| β-strand | 237-242 | 6 | 35 |
| β-strand | 248-253 | 6 | 35 |
| β-strand | 257-262 | 6 | 35 |
| β-strand | 268-272 | 5 | 35 |
| β-strand | 279-284 | 6 | 36 |
| α-helix | 287-296 | 10 | |
| β-strand | 310-315 | 6 | 36 |
| β-strand | 319-324 | 6 | 36 |
| β-strand | 329-335 | 7 | 36 |
| β-strand | 341-346 | 6 | 37 |
| β-strand | 352-357 | 6 | 37 |
| β-strand | 361-366 | 6 | 37 |
| β-strand | 371-377 | 7 | 37 |
| β-strand | 383-388 | 6 | 31 |
| β-strand | 394-399 | 6 | 31 |
| β-strand | 403-408 | 6 | 31 |
| β-strand | 409 | 1 | 30 |
Chain D: 5 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-21 | 17 | |
| α-helix | 25-34 | 10 | |
| α-helix | 41-44 | 4 | |
| α-helix | 45-47 | 3 | |
| α-helix | 50-74 | 25 | |
Chain E: 4 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-20 | 16 | |
| α-helix | 25-34 | 10 | |
| α-helix | 42-46 | 5 | |
| α-helix | 50-74 | 25 | |
Chains F and G: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-34 | 31 | |
Chain H: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 418-537 | 120 | |
Chain I: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 420-432 | 13 | |
| α-helix | 434-537 | 104 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Cytoplasmic dynein 1 heavy chain 1 | A | protein | 4646 | Homo sapiens | Q14204 |
| Platelet-activating factor acetylhydrolase IB subunit beta | B, C, D, E | protein | 410 | Homo sapiens | P43034 (AlphaFold model) |
| Cytoplasmic dynein 1 intermediate chain 2 | F, G | protein | 638 | Homo sapiens | Q13409 (AlphaFold model) |
| Dynactin subunit 1 | H, I | protein | 1281 | Homo sapiens | Q14203 (AlphaFold model) |
Sequence of entity 1 (A), FASTA
>9YND_1 Cytoplasmic dynein 1 heavy chain 1 (chains A)
MSEPGGGGGEDGSAGLEVSAVQNVADVSVLQKHLRKLVPLLLEDGGEAPAALEAALEEKS
ALEQMRKFLSDPQVHTVLVERSTLKEDVGDEGEEEKEFISYNINIDIHYGVKSNSLAFIK
RTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAP
SVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPT
FLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLT
LDILKHGKRFHATVSFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAI
FTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVF
QTWDDEYEKLQVLLRDIVKRKREENLKMVWRINPAHRKLQARLDQMRKFRRQHEQLRAVI
VRVLRPQVTAVAQQNQGEVPEPQDMKVAEVLFDAADANAIEEVNLAYENVKEVDGLDVSK
EGTEAWEAAMKRYDERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVRPHIRGA
IREYQTQLIQRVKDDIESLHDKFKVQYPQSQACKMSHVRDLPPVSGSIIWAKQIDRQLTA
YMKRVEDVLGKGWENHVEGQKLKQDGDSFRMKLNTQEIFDDWARKVQQRNLGVSGRIFTI
ESTRVRGRTGNVLKLKVNFLPEIITLSKEVRNLKWLGFRVPLAIVNKAHQANQLYPFAIS
LIESVRTYERTCEKVEERNTISLLVAGLKKEVQALIAEGIALVWESYKLDPYVQRLAETV
FNFQEKVDDLLIIEEKIDLEVRSLETCMYDHKTFSEILNRVQKAVDDLNLHSYSNLPIWV
NKLDMEIERILGVRLQAGLRAWTQVLLGQAEDKAEVDMDTDAPQVSHKPGGEPKIKNVVH
ELRITNQVIYLNPPIEECRYKLYQEMFAWKMVVLSLPRIQSQRYQVGVHYELTEEEKFYR
NALTRMPDGPVALEESYSAVMGIVSEVEQYVKVWLQYQCLWDMQAENIYNRLGEDLNKWQ
ALLVQIRKARGTFDNAETKKEFGPVVIDYGKVQSKVNLKYDSWHKEVLSKFGQMLGSNMT
EFHSQISKSRQELEQHSVDTASTSDAVTFITYVQSLKRKIKQFEKQVELYRNGQRLLEKQ
RFQFPPSWLYIDNIEGEWGAFNDIMRRKDSAIQQQVANLQMKIVQEDRAVESRTTDLLTD
WEKTKPVTGNLRPEEALQALTIYEGKFGRLKDDREKCAKAKEALELTDTGLLSGSEERVQ
VALEELQDLKGVWSELSKVWEQIDQMKEQPWVSVQPRKLRQNLDALLNQLKSFPARLRQY
ASYEFVQRLLKGYMKINMLVIELKSEALKDRHWKQLMKRLHVNWVVSELTLGQIWDVDLQ
KNEAIVKDVLLVAQGEMALEEFLKQIREVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEH
INSVSAMKLSPYYKVFEEDALSWEDKLNRIMALFDVWIDVQRRWVYLEGIFTGSADIKHL
LPVETQRFQSISTEFLALMKKVSKSPLVMDVLNIQGVQRSLERLADLLGKIQKALGEYLE
RERSSFPRFYFVGDEDLLEIIGNSKNVAKLQKHFKKMFAGVSSIILNEDNSVVLGISSRE
GEEVMFKTPVSITEHPKINEWLTLVEKEMRVTLAKLLAESVTEVEIFGKATSIDPNTYIT
WIDKYQAQLVVLSAQIAWSENVETALSSMGGGGDAAPLHSVLSNVEVTLNVLADSVLMEQ
PPLRRRKLEHLITELVHQRDVTRSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSIQ
MANAKFNYGFEYLGVQDKLVQTPLTDRCYLTMTQALEARLGGSPFGPAGTGKTESVKALG
HQLGRFVLVFNCDETFDFQAMGRIFVGLCQVGAWGCFDEFNRLEERMLSAVSQQVQCIQE
ALREHSNPNYDKTSAPITCELLNKQVKVSPDMAIFITMNPGYAGRSNLPDNLKKLFRSLA
MTKPDRQLIAQVMLYSQGFRTAEVLANKIVPFFKLCDEQLSSQSHYDFGLRALKSVLVSA
GNVKRERIQKIKREKEERGEAVDEGEIAENLPEQEILIQSVCETMVPKLVAEDIPLLFSL
LSDVFPGVQYHRGEMTALREELKKVCQEMYLTYGDGEEVGGMWVEKVLQLYQITQINHGL
MMVGPSGSGKSMAWRVLLKALERLEGVEGVAHIIDPKAISKDHLYGTLDPNTREWTDGLF
THVLRKIIDSVRGELQKRQWIVFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNVR
IMFEVQDLKYATLATVSRCGMVWFSEDVLSTDMIFNNFLARLRSIPLDEGEDEAQRRRKG
KEDEGEEAASPMLQIQRDAATIMQPYFTSNGLVTKALEHAFQLEHIMDLTRLRCLGSLFS
MLHQACRNVAQYNANHPDFPMQIEQLERYIQRYLVYAILWSLSGDSRLKMRAELGEYIRR
ITTVPLPTAPNIPIIDYEVSISGEWSPWQAKVPQIEVETHKVAAPDVVVPTLDTVRHEAL
LYTWLAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGLNFSSATTPELLLKTFDHYCE
YRRTPNGVVLAPVQLGKWLVLFCDEINLPDMDKYGTQRVISFIRQMVEHGGFYRTSDQTW
VKLERIQFVGACNPPTDPGRKPLSHRFLRHVPVVYVDYPGPASLTQIYGTFNRAMLRLIP
SLRTYAEPLTAAMVEFYTMSQERFTQDTQPHYIYSPREMTRWVRGIFEALRPLETLPVEG
LIRIWAHEALRLFQDRLVEDEERRWTDENIDTVALKHFPNIDREKAMSRPILYSNWLSKD
YIPVDQEELRDYVKARLKVFYEEELDVPLVLFNEVLDHVLRIDRIFRQPQGHLLLIGVSG
AGKTTLSRFVAWMNGLSVYQIKVHRKYTGEDFDEDLRTVLRRSGCKNEKIAFIMDESNVL
DSGFLERMNTLLANGEVPGLFEGDEYATLMTQCKEGAQKEGLMLDSHEELYKWFTSQVIR
NLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSTEALYQVGKEFTSKMDLEKPNY
IVPDYMPVVYDKLPQPPSHREAIVNSCVFVHQTLHQANARLAKRGGRTMAITPRHYLDFI
NHYANLFHEKRSELEEQQMHLNVGLRKIKETVDQVEELRRDLRIKSQELEVKNAAANDKL
KKMVKDQQEAEKKKVMSQEIQEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIK
KQHLVEVRSMANPPAAVKLALESICLLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEIS
DAIREKMKKNYMSNPSYNYEIVNRASLACGPMVKWAIAQLNYADMLKRVEPLRNELQKLE
DDAKDNQQKANEVEQMIRDLEASIARYKEEYAVLISEAQAIKADLAAVEAKVNRSTALLK
SLSAERERWEKTSETFKNQMSTIAGDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQAN
IQFRTDIARTEYLSNADERLRWQASSLPADDLCTENAIMLKRFNRYPLIIDPSGQATEFI
MNEYKDRKITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRV
LITLGDQDIDLSPSFVIFLSTRDPTVEFPPDLCSRVTFVNFTVTRSSLQSQCLNEVLKAE
RPDVDEKRSDLLKLQGEFQLRLRQLEKSLLQALNEVKGRILDDDTIITTLENLKREAAEV
TRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLYQYSLQFFLDIYHNVL
YENPNLKGVTDHTQRLSIITKDLFQVAFNRVARGMLHQDHITFAMLLARIKLKGTVGEPT
YDAEFQHFLRGNEIVLSAGSTPRIQGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFGIW
LDSSSPEQTVPYLWSEETPATPIGQAIHRLLLIQAFRPDRLLAMAHMFVSTNLGESFMSI
MEQPLDLTHIVGTEVKPNTPVLMCSVPGYDASGHVEDLAAEQNTQITSIAIGSAEGFNQA
DKAINTAVKSGRWVMLKNVHLAPGWLMQLEKKLHSLQPHACFRLFLTMEINPKVPVNLLR
AGRIFVFEPPPGVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLG
WSKKYEFGESDLRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEF
DQRLLNTFLERLFTTRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQWVELLPDTQTPSW
LGLPNNAERVLLTTQGVDMISKMLKMQMLEDEDDLAYAETEKKTRTDSTSDGRPAWMRTL
HTTASNWLHLIPQTLSHLKRTVENIKDPLFRFFEREVKMGAKLLQDVRQDLADVVQVCEG
KKKQTNYLRTLINELVKGILPRSWSHYTVPAGMTVIQWVSDFSERIKQLQNISLAAASGG
AKELKNIHVCLGGLFVPEAYITATRQYVAQANSWSLEELCLEVNVTTSQGATLDACSFGV
TGLKLQGATCNNNKLSLSNAISTALPLTQLRWVKQTNTEKKASVVTLPVYLNFTRADLIF
TVDFEIATKEDPRSFYERGVAVLCTE
Sequence of entity 2 (B, C, D, E), FASTA
>9YND_2 Platelet-activating factor acetylhydrolase IB subunit beta (chains B, C, D, E)
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE
TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK
TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
Sequence of entity 3 (F, G), FASTA
>9YND_3 Cytoplasmic dynein 1 intermediate chain 2 (chains F, G)
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAVAPVQEESDLEKKRREA
EALLQSMGLTPESPIVFSEYWVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDP
SVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVMAQPKEDEEEDDDVVA
PKPPIEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQ
INIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYN
NNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLW
DNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQD
SMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPIT
GIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALF
ACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVG
EQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA
Sequence of entity 4 (H, I), FASTA
>9YND_4 Dynactin subunit 1 (chains H, I)
MAQSKRHVYSRTPSGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV
ILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSPETPDSSASKVLRRE
GTDSNAKTSKLRGPKPKKAPTARKTTTRRPKPTRPASTGVAGASSSLGPSGSASAGELSS
SEPSTPAQTPLAAPIIPTPALTSPGAAPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAE
DKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADT
ADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQL
KQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAE
STIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARE
TELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEA
SVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDSFLRPG
GDHDCVLVLLLMPRLICKAELIRKQAQEKFDLSENCSERPGLRGAAGEQLSFAAGLVYSL
SLLQATLHRYEHALSQCSVDVYKKVGSLYPEMSAHERSLDFLIELLHKDQLDETVNVEPL
TKAIKYYQHLYSIHLAEQPEDSTMQLADHIKFTQSALDCMSVEVGRLRAFLQGGQEASDI
ALLLRDLETSCSDIRQFCKKIRRRMPGTDAPGIPAALAFGAQVSDTLLDCRKHLTWVVAV
LQEVAAAAAQLIAPLAENEGLPVAALEELAFKASEQIYGTPSSSPYECLRQSCNILISTM
NKLATAMQEGEYDAERPPSKPPPVELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLK
IKGEELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQ
ADIDQLEAEKAELKQRLNSQSKRTIEGIRGPPPSGIATLVSGIAGEEQQRGGAPGQAPGI
VPGPGLVKDSPLLLQQISAMRLHISQLQHENSVLKGAQMKASLAALPPLHVAKLSLPPHE
GPGSELAAGALYRKTNQLLETLNQLSTHTHVVDITRSSPAAKSPSAQLLEQVTQLKSLSD
TIEKLKDEVLKETVSQRPGATVPTDFATFPSSAFLRAKEEQQDDTVYMGKVTFSCAAGLG
QRHRLVLTQEQLHQLHDRLIS
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 3 |
| ATP | Adenosine-5'-triphosphate | C10 H16 N5 O13 P3 | 1 |
| MG | Magnesium ion | Mg | 2 |
Primary citation
Roles of microtubules and LIS1 in dynein transport machinery assembly. Rao, Q., Yang, J., Chai, P. et al. Nature (2026) 652:1384-1392. DOI 10.1038/s41586-026-10153-y · PubMed
Other PDB entries of the same protein (UniProt Q14204), best resolution first:
- 5OWO 1.79 Å, Human cytoplasmic Dynein N-Terminus dimerization domain at 1.8 Angstrom resolution
- 9BLZ 2.2 Å, State-1(phi motor) of full-length human dynein-1 in 5mM ATP
- 9BMR 2.6 Å, State-1 of motor domain from full-length human phi dynein-1 in 5 mM ADP
- 9DH5 2.6 Å, State-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
- 9E0X 2.7 Å, Cryo-EM structure of Phi dynein
- 9E10 2.71 Å, Dimeric motor domains from phi dynein-1 under Lis1 condition
- 9BM0 2.8 Å, State-2 of motor domain from full-length human dynein-1 in 5mM ATP
- 9BMF 2.8 Å, State-1(phi motor) of full-length human dynein-1 in 5mM ATPVi
- 9BMH 2.8 Å, State-4 of motor domain from full-length human dynein-1 in 5mM ATPVi
- 9BN3 2.8 Å, The alpha registry-locked dynein motor domain mutant in 5mM ATP condition, class1
- 9BM2 2.82 Å, State-4 of motor domain from full-length human dynein-1 in 5 mM ATP
- 9BMG 2.86 Å, State-2 of full-length human dynein-1 in 5mM ATPVi
Browse structure collections
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