IncE (incE) is a 132-residue protein from Chlamydia trachomatis. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: B7SCI5.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 45.6 (very low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 0% |
| 70 to 90 | Confident: backbone generally right | 0% |
| 50 to 70 | Low: treat with caution | 33% |
| Below 50 | Very low: often disordered regions | 67% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5WY2 | X-ray | 1.9 Å | B/D=111-131 |
| 5TGI | X-ray | 1.98 Å | C/D=111-132 |
| 6E8R | X-ray | 2.27 Å | C/D=108-132 |
| 5TGJ | X-ray | 2.6 Å | B/D=111-132 |
| 5TGH | X-ray | 2.8 Å | B/D/F/H=110-132 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.