Vps72/YL1 C-terminal domain-containing protein (CTHT_0032670) is a 219-residue protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: G0S590.
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The mean pLDDT of this model is 69.3 (low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 21% |
| 70 to 90 | Confident: backbone generally right | 37% |
| 50 to 70 | Low: treat with caution | 16% |
| Below 50 | Very low: often disordered regions | 27% |
What pLDDT means and how to read it
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8OOP | EM | 2.7 Å | I=1-219 |
| 8OO7 | EM | 2.8 Å | I=1-219 |
| 8OOT | EM | 2.85 Å | I=1-219 |
| 8OOR | EM | 2.87 Å | I=1-219 |
| 8OOF | EM | 2.9 Å | I=1-219 |
| 8OOC | EM | 2.93 Å | I=1-219 |
| 6FHS | EM | 3.75 Å | I=1-219 |
| 6FML | EM | 4.34 Å | I=1-219 |
| 8AV6 | EM | 4.68 Å | I=1-219 |
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