Gamma-aminobutyric acid receptor-associated protein-like 1 (GABARAPL1) is a 117-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9H0R8.
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The mean pLDDT of this model is 95.0 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 92% |
| 70 to 90 | Confident: backbone generally right | 6% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor (PubMed:16431922). Involved in formation of autophagosomal vacuoles (PubMed:20404487). While LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (PubMed:20404487). Through its interaction with the reticulophagy receptor TEX264, participates in the remodeling of subdomains of the endoplasmic reticulum into autophagosomes upon nutrient stress, which then fuse with lysosomes for endoplasmic reticulum turnover (PubMed:31006537,…
Interacts with ATG13, OPRK1, RB1CC1 and ULK1 (PubMed:16431922, PubMed:23043107). Interacts with TP53INP1 and TP53INP2 (PubMed:22470510). Directly interacts with SQSTM1 (PubMed:17580304). Interacts with ATG3, ATG7 and MAP15. Interacts with TECPR2 (PubMed:20562859). Interacts with TBC1D5 (PubMed:22354992). Interacts with MAPK15 (PubMed:22948227). Interacts with TRIM5 (PubMed:25127057). Interacts…
Cytoplasmic vesicle, autophagosome, Cytoplasmic vesicle membrane, Cytoplasm, cytoskeleton, Endoplasmic reticulum, Golgi apparatus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6YOO | X-ray | 1.06 Å | A=1-117 |
| 6HOI | X-ray | 1.14 Å | A/B=1-117 |
| 6HOL | X-ray | 1.4 Å | A/B=1-117 |
| 5LXI | X-ray | 1.44 Å | B/D=1-117 |
| 7AA7 | X-ray | 1.45 Å | A/B=1-117 |
| 8X8A | X-ray | 1.53 Å | A=1-117 |
| 5LXH | X-ray | 1.58 Å | A/B/C=1-117 |
| 2R2Q | X-ray | 1.65 Å | A/B=3-111 |
| 7AA9 | X-ray | 1.72 Å | A/C/E/G/I/K=1-117 |
| 9JF2 | X-ray | 1.76 Å | A/B=1-117 |
| 7JHX | X-ray | 1.91 Å | A/B=1-117 |
| 9HGC | X-ray | 2.52 Å | A/C/E/G=1-117 |
| 5DPT | X-ray | 2.9 Å | A/B=2-117 |
| 2L8J | NMR | A=2-115 |
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