11AA: Nucleolar protein 16
Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP. Determined by electron microscopy at 2.78 Å resolution. Released 1 Jul 2026.
- Method
- Electron microscopy
- Resolution
- 2.78 Å
- Organism
- Saccharomyces cerevisiae S288C
- Chains
- 17
- Atoms
- 29,525
- Mol. weight
- 1795.11 kDa
- Ligands
- MG
- Released
- 1 Jul 2026
Explore 11AA in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
11AA contains 165 α-helices and 111 β-strands across 14 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 7: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 179-192 | 14 | |
| α-helix | 196-200 | 5 | |
| α-helix | 212-225 | 14 | |
Chain b: 8 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 33-37 | 5 | 17 |
| β-strand | 38 | 1 | 18 |
| α-helix | 43-55 | 13 | |
| β-strand | 59-61 | 3 | 17 |
| α-helix | 63-64 | 2 | |
| β-strand | 65 | 1 | 18 |
| α-helix | 73-80 | 8 | |
| β-strand | 85-92 | 8 | 17 |
| β-strand | 96-102 | 7 | 17 |
| β-strand | 109-118 | 10 | 17 |
| β-strand | 130 | 1 | 19 |
| β-strand | 133 | 1 | 20 |
| α-helix | 134-135 | 2 | |
| β-strand | 136-139 | 4 | 17 |
| α-helix | 141-144 | 4 | |
| α-helix | 147-160 | 14 | |
| α-helix | 162-163 | 2 | |
| β-strand | 170 | 1 | 20 |
| β-strand | 175-182 | 8 | 17 |
| β-strand | 185-195 | 11 | 17 |
| β-strand | 210-214 | 5 | 17 |
| β-strand | 218-227 | 10 | 17 |
| β-strand | 235-238 | 4 | 17 |
| α-helix | 245-254 | 10 | |
Chain G: 16 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 55-68 | 14 | |
| β-strand | 70-71 | 2 | 1 |
| α-helix | 72 | 1 | |
| α-helix | 73-76 | 4 | |
| α-helix | 77-79 | 3 | |
| α-helix | 84-94 | 11 | |
| α-helix | 95-97 | 3 | |
| α-helix | 98-101 | 4 | |
| α-helix | 102-118 | 17 | |
| α-helix | 127-129 | 3 | |
| β-strand | 133-134 | 2 | 2 |
| α-helix | 136-144 | 9 | |
| β-strand | 150-154 | 5 | 2 |
| α-helix | 161-173 | 13 | |
| β-strand | 177-180 | 4 | 2 |
| α-helix | 183-189 | 7 | |
| β-strand | 197-200 | 4 | 2 |
| α-helix | 205-207 | 3 | |
| α-helix | 208-218 | 11 | |
| α-helix | 219-223 | 5 | |
| α-helix | 224-226 | 3 | |
| β-strand | 234-235 | 2 | 1 |
Chain H: 11 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 143-147 | 5 | |
| β-strand | 149-156 | 8 | 3 |
| α-helix | 158-161 | 4 | |
| α-helix | 163-172 | 10 | |
| β-strand | 203-209 | 7 | 3 |
| β-strand | 213 | 1 | 4 |
| α-helix | 219-225 | 7 | |
| β-strand | 228 | 1 | 4 |
| β-strand | 234-241 | 8 | 3 |
| α-helix | 246-253 | 8 | |
| β-strand | 258 | 1 | 5 |
| β-strand | 263 | 1 | 5 |
| β-strand | 265-268 | 4 | 3 |
| α-helix | 272-274 | 3 | |
| α-helix | 277-279 | 3 | |
| β-strand | 280-284 | 5 | 6 |
| α-helix | 292-299 | 8 | |
| α-helix | 300-302 | 3 | |
| β-strand | 305-312 | 8 | 6 |
| β-strand | 319-327 | 9 | 6 |
| α-helix | 330-337 | 8 | |
| β-strand | 343 | 1 | 7 |
| β-strand | 363 | 1 | 7 |
| β-strand | 365-368 | 4 | 6 |
| α-helix | 369-370 | 2 | |
Chain i: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 22-24 | 3 | |
| α-helix | 28-30 | 3 | |
| α-helix | 32-34 | 3 | |
| α-helix | 35-48 | 14 | |
| α-helix | 52-63 | 12 | |
| α-helix | 66-77 | 12 | |
| α-helix | 80-98 | 19 | |
Chain K: 18 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 34-48 | 15 | |
| β-strand | 64-65 | 2 | 8 |
| α-helix | 70-74 | 5 | |
| β-strand | 77-84 | 8 | 9 |
| α-helix | 96 | 1 | |
| β-strand | 97-101 | 5 | 10 |
| α-helix | 108-114 | 7 | |
| α-helix | 120-121 | 2 | |
| β-strand | 123-127 | 5 | 11 |
| α-helix | 130-134 | 5 | |
| α-helix | 137-144 | 8 | |
| β-strand | 153-156 | 4 | 11 |
| α-helix | 157-162 | 6 | |
| α-helix | 167-174 | 8 | |
| β-strand | 179-183 | 5 | 11 |
| α-helix | 187-189 | 3 | |
| α-helix | 190-193 | 4 | |
| α-helix | 198-200 | 3 | |
| β-strand | 207-209 | 3 | 11 |
| β-strand | 212-213 | 2 | 12 |
| β-strand | 216-217 | 2 | 12 |
| α-helix | 219-232 | 14 | |
| β-strand | 233-237 | 5 | 10 |
| β-strand | 243-250 | 8 | 9 |
| α-helix | 256-273 | 18 | |
| β-strand | 276-283 | 8 | 9 |
| β-strand | 289-293 | 5 | 9 |
| α-helix | 296-301 | 6 | |
| α-helix | 328-336 | 9 | |
| α-helix | 339-341 | 3 | |
| α-helix | 342-345 | 4 | |
Chain L: 6 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 13-25 | 13 | |
| α-helix | 52-53 | 2 | |
| β-strand | 54 | 1 | 13 |
| β-strand | 57-59 | 3 | 14 |
| α-helix | 63-66 | 4 | |
| β-strand | 69-71 | 3 | 14 |
| β-strand | 75 | 1 | 15 |
| α-helix | 77-82 | 6 | |
| α-helix | 87-93 | 7 | |
| β-strand | 95 | 1 | 13 |
| β-strand | 97 | 1 | 15 |
| α-helix | 106-121 | 16 | |
Chain m: 7 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 196 | 1 | 17 |
| α-helix | 198-208 | 11 | |
| α-helix | 212-214 | 3 | |
| α-helix | 217-219 | 3 | |
| β-strand | 222-224 | 3 | 17 |
| α-helix | 229-232 | 4 | |
| α-helix | 239-263 | 25 | |
| α-helix | 270-271 | 2 | |
| β-strand | 278 | 1 | 19 |
| α-helix | 282-290 | 9 | |
6 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S ribosomal RNA | 1 | RNA | 3396 | Saccharomyces cerevisiae S288C | |
| 5.8S ribosomal RNA | 2 | RNA | 159 | Saccharomyces cerevisiae S288C | |
| Internal transcribed spacer 2 ITS2 | 3 | RNA | 232 | Saccharomyces cerevisiae S288C | |
| Nucleolar protein 16 | 7 | protein | 231 | Saccharomyces cerevisiae S288C | P40007 (AlphaFold model) |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae S288C | P17076 (AlphaFold model) |
| Nucleolar protein 12 | H | protein | 459 | Saccharomyces cerevisiae S288C | Q08208 (AlphaFold model) |
| Proteasome-interacting protein CIC1 | K | protein | 376 | Saccharomyces cerevisiae S288C | P38779 (AlphaFold model) |
| 60S ribosomal protein L13-A | L | protein | 199 | Saccharomyces cerevisiae S288C | Q12690 |
| 60S ribosomal protein L15-A | N | protein | 204 | Saccharomyces cerevisiae S288C | P05748 |
| Ribosome biogenesis protein BRX1 | b | protein | 291 | Saccharomyces cerevisiae S288C | Q08235 |
| 60S ribosomal protein L36-A | i | protein | 100 | Saccharomyces cerevisiae S288C | P05745 |
| rRNA-processing protein EBP2 | m | protein | 427 | Saccharomyces cerevisiae S288C | P36049 |
5 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>11AA_1 25S ribosomal RNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (2), FASTA
>11AA_2 5.8S ribosomal RNA (chains 2)
AAAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGA
UACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCC
CUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (3), FASTA
>11AA_3 Internal transcribed spacer 2 ITS2 (chains 3)
CCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCU
GGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAA
UGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGU
AUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAA
Sequence of entity 4 (7), FASTA
>11AA_4 Nucleolar protein 16 (chains 7)
MTSVRKRKMNRSSVGKATRRNKDKQRKINIQSNPIIAANWDYSLTMAQNYKKLGLRAKLQ
TPAGGKEADLSKVVKRIPLTKPVLDEDEDEDEGEDEQNDYNAATVELDENEIPEGGARIQ
RDKNGDVVRVVYGKKKNFDADEDVNEIKARDTTEETEVVKKLEELASRPVIRKERSQSER
EEEWLEKLYKKHGDDYKKMFFDKKLNIYQQSEGDLKRRLLRWKKRNGIASK
Sequence of entity 5 (G), FASTA
>11AA_5 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 6 (H), FASTA
>11AA_6 Nucleolar protein 12 (chains H)
MSSAIDNLFGNIDEKKIESSVDKLFSSSCGPINKLEVKSKTRTVLPDSKKRERAAEADQE
EKEASKPDVSDEQTEEVALPKVKKAKKSKRNDEDEDLEARYYAKLLNEEAEAEDDKPTVT
KTDETSVPLTSAAKKVDFKEDELEKAERTVFIGNILSTVITSKKVYKEFKKLFGTNPIAE
TEESGNEKEEESSKKSDNNEFAIESIRFRSISFDEALPRKVAFVQQKFHKSRDTINAYIV
YKNKSAVRKICSNLNAVVFQDHHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFE
PCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQKQEDENTKKPTKK
ARKLRVSRCKNMKKGTTIGTGLDRNGLTDSQRTRAGRAKKILGKADRATLGQEITIEGLR
AKKGEGSTHLKKKKQRSATGRVTKRSIAFKKAQAEKSKK
Sequence of entity 7 (K), FASTA
>11AA_7 Proteasome-interacting protein CIC1 (chains K)
MAKKSNSKKSTPVSTPSKEKKKVIEKKSSTAIPRERVIKAVNELIKFTSKPQDENNEEGN
NGKKNLLEDDEEELKKDLQLIVVNNKSFTGTSKSFKLKLLNVKHSFYKPWKEASATAVKD
FKVLLILKDSDIKKVSEDDLFDQLDSEGIKVDEIICGKDLKTVYKAYEARNAFISQFSLI
LADDSIVTSLPKLMGGKAYNKVETTPISIRTHANKEFSLTTLTNNIKKVYMNQLPVKLPR
GTTLNVHLGNLEWLRPEEFVDNVELISEQLIKAYQIRSIFIKTNRSPVLPLYYNQDVLDE
LEAKKDKIEETHEDDMVTIDGVQVHLSTFNKGLMEIANPSELGSIFSKQINNAKKRSSSE
LEKESSESEAVKKAKS
Sequence of entity 8 (L), FASTA
>11AA_8 60S ribosomal protein L13-A (chains L)
MAISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRA
PTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQ
SKIIVFPRNGKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFR
GIREKRAREKAEAEAEKKK
Sequence of entity 9 (N), FASTA
>11AA_9 60S ribosomal protein L15-A (chains N)
MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV
IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW
VNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGINKGHKF
NNTKAGRRKTWKRQNTLSLWRYRK
Sequence of entity 10 (b), FASTA
>11AA_10 Ribosome biogenesis protein BRX1 (chains b)
MSSIYKALAGKSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSR
KEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTM
DELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFS
IVDDKIWVRTYEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENK
QYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSNDALFK
Sequence of entity 11 (i), FASTA
>11AA_11 60S ribosomal protein L36-A (chains i)
MTVKTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDL
IRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASRRH
Sequence of entity 12 (m), FASTA
>11AA_12 rRNA-processing protein EBP2 (chains m)
MAKGFKLKELLSHQKEIEKAEKLENDLKKKKSQELKKEEPTIVTASNLKKLEKKEKKADV
KKEVAADTEEYQSQALSKKEKRKLKKELKKMQEQDATEAQKHMSGDEDESGDDREEEEEE
EEEEEGRLDLEKLAKSDSESEDDSESENDSEEDEDVVAKEESEEKEEQEEEQDVPLSDVE
FDSDADVVPHHKLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDT
ERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKK
AREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEE
EVEGKRFDRGRPNGKRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSSRKMKGKTNRPGK
SRRARRF
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 5 |
Primary citation
Mechanism for the initiation of co-transcriptional pre-60 S assembly. Piwowarczyk, R., Klinge, S. bioRxiv (2026). DOI 10.64898/2026.05.22.727207 · PubMed
Other PDB entries of the same protein (UniProt P40007 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 8V83 2.53 Å, 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- 8V87 2.66 Å, 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- 8V84 2.7 Å, 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- 7R6Q 2.98 Å, State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model
- 7NAC 3.04 Å, State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
- 7R7A 3.04 Å, State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
- 6EM3 3.2 Å, State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of…
- 6ELZ 3.3 Å, State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S…
- 7OHX 3.3 Å, Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34…
- 7OHW 3.5 Å, Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25…
- 6EM1 3.6 Å, State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S…
- 6C0F 3.7 Å, Yeast nucleolar pre-60S ribosomal subunit (state 2)
Browse structure collections
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