1JLM: I-domain from integrin CR3, MN2+ bound

I-domain from integrin CR3, MN2+ bound. Determined by X-ray diffraction at 2.0 Å resolution. Released 11 Jan 1997.

Method: X-ray diffraction
Resolution: 2.0 Å
Organism: Homo sapiens
Chains: 1
Atoms: 1,621
Mol. weight: 22.05 kDa
Ligands: MN
Released: 11 Jan 1997

Explore 1JLM in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1JLM contains 16 α-helices and 8 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 16 helices, 8 β-strands

Element	Residues	Length	Sheet
β-strand	133-140	8	1
α-helix	147-164	18
β-strand	169-176	8	1
β-strand	180-184	5	1
α-helix	186-191	6
α-helix	195-199	5
β-strand	209	1	2
α-helix	211-217	7
α-helix	218-222	5
α-helix	225-227	3
α-helix	229-230	2
β-strand	234-241	8	1
β-strand	246	1	2
α-helix	252-254	3
α-helix	256-261	6
β-strand	265-271	7	1
α-helix	273-275	3
α-helix	278-287	10
α-helix	289	1
α-helix	291	1
α-helix	292-295	4
β-strand	296-299	4	1
α-helix	302-308	7
α-helix	309-317	9

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Integrin	A	protein	192	Homo sapiens	P11215 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>1JLM_1 INTEGRIN (chains A)
GCPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTF
KEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF
GDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALK
TIQNQLREKIFA

Ligands and cofactors

ID	Name	Formula	Copies
MN	Manganese (II) ion	Mn	1

Primary citation

Two conformations of the integrin A-domain (I-domain): a pathway for activation? Lee, J.O., Bankston, L.A., Arnaout, M.A. et al. Structure (1995) 3:1333-1340. DOI 10.1016/S0969-2126(01)00271-4 · PubMed

Other PDB entries of the same protein (UniProt P11215 (AlphaFold model), which also has an AlphaFold model), best resolution first:

1MF7 1.25 Å, Integrin alpha M I domain
1NA5 1.5 Å, Integrin alpha M I domain
8CE6 1.58 Å, Crystal structure of human Cd11b I domain in P212121 space group
1IDO 1.7 Å, I-domain from integrin CR3, MG2+ bound
4XW2 2.0 Å, Structural basis for simvastatin competitive antagonism of complement receptor 3
8CE9 2.11 Å, Crystal structure of human Cd11b I domain in C121 space group
1M1U 2.3 Å, An isoleucine-based allosteric switch controls affinity and shape shifting in integrin…
1N9Z 2.5 Å, Integrin alpha M I domain mutant
9RM9 2.6 Å, Cryo-EM structure of alphaM/beta2 headpiece complex without alphaM I-domain - the…
1BHO 2.7 Å, Mac-1 I domain magnesium complex
1BHQ 2.7 Å, Mac-1 I domain cadmium complex
1IDN 2.7 Å, Mac-1 I domain metal free

Browse structure collections

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