1RJ2: DH/PH fragment of Dbs without bound GTPase

Crystal structure of the DH/PH fragment of Dbs without bound GTPase. Determined by X-ray diffraction at 3.0 Å resolution. Released 29 Jun 2004.

Method
X-ray diffraction
Resolution
3.0 Å
Organism
Mus musculus
Chains
4
Atoms
10,370
Mol. weight
164.88 kDa
Released
29 Jun 2004

Explore 1RJ2 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1RJ2 contains 74 α-helices and 35 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 19 helices, 8 β-strands

ElementResiduesLengthSheet
α-helix626-65429
α-helix655-6595
α-helix660-6623
α-helix665-6706
α-helix679-6835
α-helix686-6916
α-helix692-6976
α-helix698-7036
α-helix704-7063
α-helix708-7114
α-helix712-7176
α-helix721-7233
α-helix724-74219
α-helix746-75510
α-helix761-7655
α-helix767-78418
α-helix792-81524
β-strand818-81921
β-strand833-84081
α-helix8581
β-strand859-86571
β-strand870-87561
β-strand889-89351
β-strand900-90341
β-strand912-91761
β-strand922-92761
α-helix931-94919
Chain D: 17 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix625-65430
α-helix655-6595
α-helix660-6623
α-helix679-6824
α-helix686-6916
α-helix692-6976
α-helix698-7025
α-helix708-7114
α-helix712-7165
α-helix723-74220
α-helix746-7538
α-helix762-78524
α-helix792-81524
β-strand818-81922
α-helix825-8273
β-strand833-84082
α-helix8581
β-strand859-86572
β-strand869-87682
β-strand888-89692
β-strand900-90342
β-strand912-91762
β-strand922-92762
α-helix931-94616
α-helix949-9557
Chain G: 20 helices, 11 β-strands
ElementResiduesLengthSheet
α-helix626-65429
α-helix655-6595
α-helix660-6623
α-helix665-6684
α-helix673-6764
α-helix679-6835
α-helix686-6916
α-helix692-6976
α-helix698-7036
α-helix704-7063
α-helix708-7103
α-helix712-7176
α-helix719-7224
α-helix724-74017
α-helix746-75510
α-helix761-7655
α-helix767-78418
α-helix792-81221
β-strand836-84163
β-strand860-86233
β-strand86314
β-strand86615
β-strand869-87135
β-strand87214
β-strand894-89635
β-strand900-90343
β-strand913-91753
β-strand92213
β-strand924-92743
α-helix932-9409
α-helix945-9484
Chain J: 18 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix625-65733
α-helix659-6613
α-helix666-6683
α-helix679-6824
α-helix686-6927
α-helix693-6975
α-helix698-7036
α-helix704-7063
α-helix708-7103
α-helix711-7166
α-helix719-7224
α-helix723-7319
α-helix734-7418
α-helix746-7549
α-helix762-78423
α-helix792-81524
β-strand81916
β-strand836-84056
β-strand859-86576
β-strand870-87456
β-strand890-89346
β-strand900-90346
β-strand912-91766
β-strand923-92756
α-helix931-94414
α-helix946-9494

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Guanine nucleotide exchange factor DBS [Fragment]A, D, G, Jprotein353Mus musculusQ64096 (AlphaFold model)
Sequence of entity 1 (A, D, G, J), FASTA
>1RJ2_1 Guanine nucleotide exchange factor DBS [Fragment] (chains A, D, G, J)
MGEEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNI
LFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQ
CSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSS
ILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQR
HLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNARE
EVYIIQAPTPEIKAAWVNEIRKVLTSQLQACREASQHRALEQSHSLPHHHHHH

Primary citation

Crystal structure of the DH/PH fragment of Dbs without bound GTPase. Worthylake, D.K., Rossman, K.L., Sondek, J. Structure (2004) 12:1078-1086. DOI 10.1016/j.str.2004.03.021 · PubMed

Other PDB entries of the same protein (UniProt Q64096 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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