Crystal structure of the DH/PH fragment of Dbs without bound GTPase. Determined by X-ray diffraction at 3.0 Å resolution. Released 29 Jun 2004.
Explore 1RJ2 in 3D Show helices and sheets RCSB PDB PDBe
1RJ2 contains 74 α-helices and 35 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 626-654 | 29 | |
| α-helix | 655-659 | 5 | |
| α-helix | 660-662 | 3 | |
| α-helix | 665-670 | 6 | |
| α-helix | 679-683 | 5 | |
| α-helix | 686-691 | 6 | |
| α-helix | 692-697 | 6 | |
| α-helix | 698-703 | 6 | |
| α-helix | 704-706 | 3 | |
| α-helix | 708-711 | 4 | |
| α-helix | 712-717 | 6 | |
| α-helix | 721-723 | 3 | |
| α-helix | 724-742 | 19 | |
| α-helix | 746-755 | 10 | |
| α-helix | 761-765 | 5 | |
| α-helix | 767-784 | 18 | |
| α-helix | 792-815 | 24 | |
| β-strand | 818-819 | 2 | 1 |
| β-strand | 833-840 | 8 | 1 |
| α-helix | 858 | 1 | |
| β-strand | 859-865 | 7 | 1 |
| β-strand | 870-875 | 6 | 1 |
| β-strand | 889-893 | 5 | 1 |
| β-strand | 900-903 | 4 | 1 |
| β-strand | 912-917 | 6 | 1 |
| β-strand | 922-927 | 6 | 1 |
| α-helix | 931-949 | 19 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 625-654 | 30 | |
| α-helix | 655-659 | 5 | |
| α-helix | 660-662 | 3 | |
| α-helix | 679-682 | 4 | |
| α-helix | 686-691 | 6 | |
| α-helix | 692-697 | 6 | |
| α-helix | 698-702 | 5 | |
| α-helix | 708-711 | 4 | |
| α-helix | 712-716 | 5 | |
| α-helix | 723-742 | 20 | |
| α-helix | 746-753 | 8 | |
| α-helix | 762-785 | 24 | |
| α-helix | 792-815 | 24 | |
| β-strand | 818-819 | 2 | 2 |
| α-helix | 825-827 | 3 | |
| β-strand | 833-840 | 8 | 2 |
| α-helix | 858 | 1 | |
| β-strand | 859-865 | 7 | 2 |
| β-strand | 869-876 | 8 | 2 |
| β-strand | 888-896 | 9 | 2 |
| β-strand | 900-903 | 4 | 2 |
| β-strand | 912-917 | 6 | 2 |
| β-strand | 922-927 | 6 | 2 |
| α-helix | 931-946 | 16 | |
| α-helix | 949-955 | 7 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 626-654 | 29 | |
| α-helix | 655-659 | 5 | |
| α-helix | 660-662 | 3 | |
| α-helix | 665-668 | 4 | |
| α-helix | 673-676 | 4 | |
| α-helix | 679-683 | 5 | |
| α-helix | 686-691 | 6 | |
| α-helix | 692-697 | 6 | |
| α-helix | 698-703 | 6 | |
| α-helix | 704-706 | 3 | |
| α-helix | 708-710 | 3 | |
| α-helix | 712-717 | 6 | |
| α-helix | 719-722 | 4 | |
| α-helix | 724-740 | 17 | |
| α-helix | 746-755 | 10 | |
| α-helix | 761-765 | 5 | |
| α-helix | 767-784 | 18 | |
| α-helix | 792-812 | 21 | |
| β-strand | 836-841 | 6 | 3 |
| β-strand | 860-862 | 3 | 3 |
| β-strand | 863 | 1 | 4 |
| β-strand | 866 | 1 | 5 |
| β-strand | 869-871 | 3 | 5 |
| β-strand | 872 | 1 | 4 |
| β-strand | 894-896 | 3 | 5 |
| β-strand | 900-903 | 4 | 3 |
| β-strand | 913-917 | 5 | 3 |
| β-strand | 922 | 1 | 3 |
| β-strand | 924-927 | 4 | 3 |
| α-helix | 932-940 | 9 | |
| α-helix | 945-948 | 4 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 625-657 | 33 | |
| α-helix | 659-661 | 3 | |
| α-helix | 666-668 | 3 | |
| α-helix | 679-682 | 4 | |
| α-helix | 686-692 | 7 | |
| α-helix | 693-697 | 5 | |
| α-helix | 698-703 | 6 | |
| α-helix | 704-706 | 3 | |
| α-helix | 708-710 | 3 | |
| α-helix | 711-716 | 6 | |
| α-helix | 719-722 | 4 | |
| α-helix | 723-731 | 9 | |
| α-helix | 734-741 | 8 | |
| α-helix | 746-754 | 9 | |
| α-helix | 762-784 | 23 | |
| α-helix | 792-815 | 24 | |
| β-strand | 819 | 1 | 6 |
| β-strand | 836-840 | 5 | 6 |
| β-strand | 859-865 | 7 | 6 |
| β-strand | 870-874 | 5 | 6 |
| β-strand | 890-893 | 4 | 6 |
| β-strand | 900-903 | 4 | 6 |
| β-strand | 912-917 | 6 | 6 |
| β-strand | 923-927 | 5 | 6 |
| α-helix | 931-944 | 14 | |
| α-helix | 946-949 | 4 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Guanine nucleotide exchange factor DBS [Fragment] | A, D, G, J | protein | 353 | Mus musculus | Q64096 (AlphaFold model) |
>1RJ2_1 Guanine nucleotide exchange factor DBS [Fragment] (chains A, D, G, J) MGEEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNI LFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQ CSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSS ILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQR HLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNARE EVYIIQAPTPEIKAAWVNEIRKVLTSQLQACREASQHRALEQSHSLPHHHHHH
Crystal structure of the DH/PH fragment of Dbs without bound GTPase. Worthylake, D.K., Rossman, K.L., Sondek, J. Structure (2004) 12:1078-1086. DOI 10.1016/j.str.2004.03.021 · PubMed
Other PDB entries of the same protein (UniProt Q64096 (AlphaFold model), which also has an AlphaFold model), best resolution first:
MolViewer shows 1RJ2 directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.