1ZAF: Estrogen receptor beta

Crystal structure of estrogen receptor beta complexed with 3-Bromo-6-hydroxy-2-(4-hydroxy-phenyl)-inden-1-one. Determined by X-ray diffraction at 2.2 Å resolution. Released 11 Apr 2006.

Method: X-ray diffraction
Resolution: 2.2 Å
Organism: Homo sapiens
Chains: 4
Atoms: 4,001
Mol. weight: 57.22 kDa
Ligands: 789
Released: 11 Apr 2006

Explore 1ZAF in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1ZAF contains 25 α-helices and 6 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 11 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	265-275	11
α-helix	277-279	3
α-helix	291-314	24
α-helix	319-321	3
α-helix	324-347	24
β-strand	354-357	4	1
β-strand	360-362	3	1
α-helix	373-390	18
α-helix	394-406	13
α-helix	422-443	22
α-helix	448-460	13
α-helix	462-481	20
α-helix	489-499	11

Chain B: 12 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	265-275	11
α-helix	276-281	6
β-strand	283	1	2
α-helix	291-314	24
α-helix	319-321	3
α-helix	324-347	24
β-strand	353-357	5	3
β-strand	359	1	2
β-strand	360-363	4	3
α-helix	364-368	5
α-helix	373-389	17
α-helix	394-407	14
α-helix	423-442	20
α-helix	448-459	12
α-helix	462-481	20
α-helix	489-496	8

Chain C: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	605-610	6

Chain D: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	605-611	7

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Estrogen receptor beta	A, B	protein	238	Homo sapiens	Q92731 (AlphaFold model)
Nuclear receptor coactivator 1	C, D	protein	13		Q15788 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>1ZAF_1 Estrogen receptor beta (chains A, B)
LSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVEL
SLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLA
TTSRFRELKLQHKEYLCVKAMILLNSAMYPLVTATQDADSSRKLAHLLNAVTDALVWVIA
KSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL

Sequence of entity 2 (C, D), FASTA

>1ZAF_2 Nuclear receptor coactivator 1 (chains C, D)
SGSHKLVQLLTTT

Ligands and cofactors

ID	Name	Formula	Copies
789	3-bromo-6-hydroxy-2-(4-hydroxyphenyl)-1H-inden-1-one	C15 H9 Br O3	2

Primary citation

Estrogen receptor ligands: design and synthesis of new 2-arylindene-1-ones. McDevitt, R.E., Malamas, M.S., Manas, E.S. et al. Bioorg Med Chem Lett (2005) 15:3137-3142. DOI 10.1016/j.bmcl.2005.04.013 · PubMed

Other PDB entries of the same protein (UniProt Q92731 (AlphaFold model), which also has an AlphaFold model), best resolution first:

3OLL 1.5 Å, Crystal structure of phosphorylated estrogen receptor beta ligand binding domain
7XVY 1.54 Å, Human Estrogen Receptor beta Ligand-binding Domain in Complex with S-DPN
1QKM 1.8 Å, Human oestrogen receptor beta ligand-binding domain in complex with partial agonist…
7XWQ 1.89 Å, Human Estrogen Receptor beta Ligand-binding Domain in Complex with…
7XWP 1.92 Å, Human Estrogen Receptor beta Ligand-binding Domain in Complex with…
2YJD 1.93 Å, Stapled peptide bound to Estrogen Receptor Beta
3OMQ 1.97 Å, Fragment-Based Design of novel Estrogen Receptor Ligands
9ECF 2.0 Å, Crystal structure of the hERbeta LBD complexed with androstenediol and SRC 2-2 peptide…
1YYE 2.03 Å, Crystal structure of estrogen receptor beta complexed with way-202196
3OMP 2.05 Å, Fragment-Based Design of novel Estrogen Receptor Ligands
7XVZ 2.08 Å, Human Estrogen Receptor beta Ligand-binding Domain in Complex with…
2NV7 2.1 Å, Crystal Structure of Estrogen Receptor Beta Complexed with WAY-555

Browse structure collections

About this viewer

MolViewer shows 1ZAF directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.