22VT: DNA replication licensing factor MCM2

Structure of human MCM2-7 single hexamer with MCM3-WHD attached to MCM2-CTD, containing Meier-Gorlin Syndrome mutation (MCM3-Q761L). Determined by electron microscopy at 3.3 Å resolution. Released 20 May 2026.

Method
Electron microscopy
Resolution
3.3 Å
Organism
Homo sapiens
Chains
6
Atoms
27,147
Mol. weight
549.35 kDa
Ligands
MG, ZN, ATP, ADP
Released
20 May 2026

Explore 22VT in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

22VT contains 180 α-helices and 176 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 2: 33 helices, 28 β-strands

ElementResiduesLengthSheet
α-helix191-20313
α-helix214-22411
β-strand230-23341
α-helix234-2385
α-helix242-2509
α-helix252-27019
β-strand283-28641
α-helix294-2963
α-helix299-3013
β-strand30512
β-strand308-31252
β-strand314-31523
β-strand322-32874
β-strand335-34064
α-helix360-3612
β-strand362-37094
β-strand374-37962
α-helix390-3923
β-strand393-39862
β-strand411-41442
β-strand417-42262
β-strand435-44062
β-strand444-44632
α-helix459-46911
α-helix473-4808
α-helix489-50012
β-strand519-52355
α-helix529-53911
β-strand54316
β-strand546-54725
β-strand559-56243
β-strand569-57243
α-helix575-5784
β-strand582-58326
β-strand586-58725
α-helix594-60512
β-strand610-61347
β-strand616-61947
β-strand624-62526
β-strand627-62935
α-helix631-6322
α-helix633-6353
α-helix643-6464
α-helix651-6566
β-strand659-66355
α-helix669-68517
α-helix716-7194
α-helix720-7267
α-helix740-75617
α-helix760-7612
α-helix764-78017
α-helix788-80215
α-helix808-8158
α-helix819-8224
α-helix830-85021
α-helix852-8543
α-helix866-8727
α-helix878-8825
α-helix884-8885
β-strand89218
β-strand90018
Chain 3: 30 helices, 28 β-strands
ElementResiduesLengthSheet
α-helix16-194
α-helix20-234
α-helix39-424
β-strand47-5049
α-helix51-577
α-helix59-679
α-helix70-8718
α-helix89-946
β-strand100-10349
α-helix118-1203
β-strand121110
β-strand124-126311
β-strand129-135712
α-helix136-1372
β-strand197-202612
α-helix213-2164
β-strand217-221512
β-strand234-235212
β-strand238-240311
β-strand241110
α-helix255-2573
β-strand259-261312
β-strand264111
α-helix278-29013
α-helix296-3016
α-helix311-32212
β-strand327-328213
β-strand334-335213
β-strand341-345514
α-helix352-3598
β-strand366114
β-strand382-384312
β-strand391-394412
α-helix399-4013
β-strand404-409614
α-helix411-4133
α-helix416-42712
β-strand430-432315
β-strand441-443315
β-strand446-452714
α-helix465-4684
α-helix473-4764
β-strand481-485514
α-helix491-50515
α-helix507-5093
α-helix516-5194
α-helix565-57612
β-strand581116
α-helix584-59815
α-helix615-63218
β-strand636116
α-helix639-65315
α-helix741-75818
β-strand762-764317
α-helix765-77410
α-helix782-79413
β-strand798-801417
β-strand804-807417
Chain 4: 27 helices, 38 β-strands
ElementResiduesLengthSheet
α-helix159-17113
α-helix193-1997
β-strand207118
α-helix214-2185
α-helix220-2289
α-helix230-24718
β-strand259118
α-helix276-2783
β-strand282-285419
β-strand289-292419
β-strand299-300220
β-strand304-306321
β-strand312-313221
β-strand317-318222
β-strand321-322222
β-strand337-339321
α-helix341-3433
β-strand346-347220
β-strand349-354619
β-strand370-375619
α-helix376-3783
β-strand385119
β-strand388123
β-strand390-397819
β-strand400124
β-strand408-409224
β-strand411125
β-strand413-417519
β-strand423123
α-helix445-4539
α-helix458-4647
α-helix474-48512
β-strand506-509426
β-strand512127
β-strand514127
α-helix519-5268
β-strand533-534226
β-strand546-550528
β-strand555-559528
α-helix562-5654
β-strand570129
β-strand573-574226
α-helix581-59212
β-strand595-600630
β-strand603-608630
β-strand612129
β-strand614-617426
α-helix630-6345
α-helix638-6414
β-strand646-649426
α-helix656-67015
α-helix677-69519
β-strand701131
α-helix704-72219
α-helix732-74716
β-strand752131
α-helix755-77218
β-strand774132
β-strand781132
α-helix784-7874
α-helix792-7943
α-helix801-81111
α-helix821-83010
α-helix837-84610
α-helix847-8493
Chain 5: 34 helices, 25 β-strands
ElementResiduesLengthSheet
α-helix31-366
α-helix47-526
α-helix54-629
α-helix74-785
α-helix82-909
α-helix92-10716
α-helix121-1233
α-helix133-1364
α-helix142-1443
β-strand153-157550
β-strand161151
β-strand225151
β-strand228-230350
α-helix241-2433
β-strand244-246350
β-strand248152
β-strand249151
β-strand262-263250
β-strand266-268352
β-strand295-298452
α-helix3161
α-helix317-3215
α-helix322-3276
α-helix330-3345
α-helix335-3395
α-helix347-35812
β-strand364153
β-strand370153
β-strand379154
β-strand380155
α-helix384-3863
α-helix387-3915
α-helix392-3976
β-strand401-403356
β-strand417-418257
β-strand428-430357
α-helix433-4364
β-strand441-443356
β-strand445154
α-helix447-4493
α-helix452-46413
α-helix508-5136
β-strand519155
α-helix556-56813
β-strand573158
α-helix576-5783
α-helix579-5835
α-helix584-5896
α-helix598-6014
α-helix610-62617
β-strand631158
α-helix634-64815
α-helix649-6535
α-helix665-68218
β-strand688-690359
α-helix691-70010
α-helix705-71713
β-strand721-724459
β-strand729-732459
Chain 6: 30 helices, 29 β-strands
ElementResiduesLengthSheet
α-helix22-3514
α-helix45-517
α-helix52-543
β-strand60-64533
α-helix65-717
α-helix73-797
α-helix87-9913
α-helix108-1103
β-strand111-115533
α-helix123-1253
β-strand131134
β-strand134-135234
β-strand138-144734
β-strand148-1581135
β-strand164-169635
α-helix187-1893
β-strand191-193335
β-strand199-204635
β-strand206-209434
β-strand223-226434
β-strand228-229235
α-helix230-2323
β-strand241-2511134
β-strand295-3051134
α-helix322-3287
α-helix331-34212
α-helix346-3549
α-helix362-37312
β-strand378-379236
β-strand385-386236
β-strand392-396537
α-helix402-41211
β-strand417-420437
β-strand433-435334
β-strand442-444334
β-strand456-460537
α-helix462-4643
α-helix467-4759
β-strand481-486638
β-strand489-494638
β-strand498-503637
α-helix516-5183
α-helix524-5296
β-strand532-536537
α-helix543-55715
α-helix572-58110
β-strand585-586239
α-helix588-60417
α-helix610-6112
β-strand612140
α-helix619-63416
β-strand639-640239
α-helix642-65514
α-helix6571
β-strand658140
α-helix6591
α-helix722-73817
α-helix752-7587
α-helix768-7769
Chain 7: 26 helices, 28 β-strands
ElementResiduesLengthSheet
α-helix6-105
α-helix32-398
β-strand47-49341
α-helix52-587
α-helix60-689
α-helix70-8314
β-strand135-137341
β-strand147142
α-helix149-1513
β-strand163142
β-strand165-170643
β-strand174-1831025
β-strand190-194525
β-strand199-200224
α-helix201-2033
β-strand205144
α-helix209-2146
β-strand219144
β-strand221-2321225
β-strand234-238543
α-helix249-2513
β-strand252-256543
β-strand270-271243
β-strand298-299243
α-helix333-3397
α-helix348-35912
β-strand377-378245
β-strand381146
α-helix387-39711
β-strand401-404445
α-helix407-4093
α-helix410-4145
β-strand416147
α-helix425-4273
β-strand431147
β-strand441-444445
α-helix452-46413
β-strand466148
β-strand479148
β-strand483-486445
α-helix501-5044
α-helix509-5146
β-strand517-518245
β-strand521146
α-helix527-54317
α-helix546-5483
α-helix556-56510
β-strand572149
α-helix573-5742
α-helix575-5773
α-helix578-59518
α-helix603-61917
β-strand624149
α-helix627-64014

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
DNA replication licensing factor MCM22protein904Homo sapiensP49736 (AlphaFold model)
DNA replication licensing factor MCM33protein808Homo sapiensP25205 (AlphaFold model)
DNA replication licensing factor MCM44protein863Homo sapiensP33991 (AlphaFold model)
DNA replication licensing factor MCM66protein821Homo sapiensQ14566 (AlphaFold model)
DNA replication licensing factor MCM77protein719Homo sapiensP33993
DNA replication licensing factor MCM55protein734Homo sapiensP33992
Sequence of entity 1 (2), FASTA
>22VT_1 DNA replication licensing factor MCM2 (chains 2)
MAESSESFTMASSPAQRRRGNDPLTSSPGRSSRRTDALTSSPGRDLPPFEDESEGLLGTE
GPLEEEEDGEELIGDGMERDYRAIPELDAYEAEGLALDDEDVEELTASQREAAERAMRQR
DREAGRGLGRMRRGLLYDSDEEDEERPARKRRQVERATEDGEEDEEMIESIENLEDLKGH
SVREWVSMAGPRLEIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAR
EHVLAYFLPEAPAELLQIFDEAALEVVLAMYPKYDRITNHIHVRISHLPLVEELRSLRQL
HLNQLIRTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQEVKPGSCPECQSAGP
FEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHN
NYDGSLNTANGFPVFATVILANHVAKKDNKVAVGELTDEDVKMITSLSKDQQIGEKIFAS
IAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKYIEKVS
SRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSI
HEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDIL
CVVRDTVDPVQDEMLARFVVGSHVRHHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVL
KKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESMATGSIPITVRHIESMIRMAEAHARI
HLRDYVIEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQLV
AEQVTYQRNRFGAQQDTIEVPEKDLVDKARQINIHNLSAFYDSELFRMNKFSHDLKRKMI
LQQF
Sequence of entity 2 (3), FASTA
>22VT_2 DNA replication licensing factor MCM3 (chains 3)
MAGTVVLDDVELREAQRDYLDFLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKNEK
RANRLLNNAFEELVAFQRALKDFVASIDATYAKQYEEFYVGLEGSFGSKHVSPRTLTSCF
LSCVVCVEGIVTKCSLVRPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKDEE
NNPLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGT
YRCLPGKKGGYTSGTFRTVLIACNVKQMSKDAQPSFSAEDIAKIKKFSKTRSKDIFDQLA
KSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRYVLC
TAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRT
AIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFD
LLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPNFSQEDQQ
DTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRLRSQ
DSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAYFKKVLEK
EKKRKKRSEDESETEDEEEKSQEDQEQKRKRRKTRQPDAKDGDSYDPYDFSDTEEEMPQV
HTPKTADSQETKESQKVELSESRLKAFKVALLDVFREAHALSIGMNRLTESINRDSEEPF
SSVEIQAALSKMQDDNQVMVSEGIIFLI
Sequence of entity 3 (4), FASTA
>22VT_3 DNA replication licensing factor MCM4 (chains 4)
MSSPASTPSRRGSRRGRATPAQTPRSEDARSSPSQRRRGEDSTSTGELQPMPTSPGVDLQ
SPAAQDVLFSSPPQMHSSAIPLDFDVSSPLTYGTPSSRVEGTPRSGVRGTPVRQRPDLGS
AQKGLQVDLQSDGAAAEDIVASEQSLGQKLVIWGTDVNVAACKENFQRFLQRFIDPLAKE
EENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDKNLYRQLISYPQEVIPTFDMA
VNEIFFDRYPDSILEHQIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIPEMQ
EAFFQCQVCAHTTRVEMDRGRIAEPSVCGRCHTTHSMALIHNRSLFSDKQMIKLQESPED
MPAGQTPHTVILFAHNDLVDKVQPGDRVNVTGIYRAVPIRVNPRVSNVKSVYKTHIDVIH
YRKTDAKRLHGLDEEAEQKLFSEKRVELLKELSRKPDIYERLASALAPSIYEHEDIKKGI
LLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSA
VGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAK
AGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLLLDPQDEAYDR
RLAHHLVALYYQSEEQAEEELLDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVDMRKI
GSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDVEEAKRLHREALKQSATDPRTGI
VDISILTTGMSATSRKRKEELAEALKKLILSKGKTPALKYQQLFEDIRGQSDIAITKDMF
EEALRALADDDFLTVTGKTVRLL
Sequence of entity 4 (6), FASTA
>22VT_4 DNA replication licensing factor MCM6 (chains 6)
MDLAAAAEPGAGSQHLEVRDEVAEKCQKLFLDFLEEFQSSDGEIKYLQLAEELIRPERNT
LVVSFVDLEQFNQQLSTTIQEEFYRVYPYLCRALKTFVKDRKEIPLAKDFYVAFQDLPTR
HKIRELTSSRIGLLTRISGQVVRTHPVHPELVSGTFLCLDCQTVIRDVEQQFKYTQPNIC
RNPVCANRRRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGD
KCDFTGTLIVVPDVSKLSTPGARAETNSRVSGVDGYETEGIRGLRALGVRDLSYRLVFLA
CCVAPTNPRFGGKELRDEEQTAESIKNQMTVKEWEKVFEMSQDKNLYHNLCTSLFPTIHG
NDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHVEEFSPRAVYTS
GKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRDQVAIHEAMEQQ
TISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSRFDLFFILVDEC
NEVTDYAIARRIVDLHSRIEESIDRVYSLDDIRRYLLFARQFKPKISKESEDFIVEQYKH
LRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKEAFRLLNKSIIRVE
TPDVNLDQEEEIQMEVDEGAGGINGHADSPAPVNGINGYNEDINQESAPKASLRLGFSEY
CRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRL
THYDHVLIELTQAGLKGSTEGSESYEEDPYLVVNPNYLLED
Sequence of entity 5 (7), FASTA
>22VT_5 DNA replication licensing factor MCM7 (chains 7)
MALKDYALEKEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDP
ELVDSICENARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVR
SPQNQYPAELMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVA
TYTCDQCGAETYQPIQSPTFMPLIMCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEH
SDQVPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEA
HRIVKMNKSEDDESGAGELTREELRQIAEEDFYEKLAASIAPEIYGHEDVKKALLLLLVG
GVDQSPRGMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLR
DSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNA
RCSILAAANPAYGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYV
HQHSRQPPSQFEPLDMKLMRRYIAMCREKQPMVPESLADYITAAYVEMRREAWASKDATY
TSARTLLAILRLSTALARLRMVDVVEKEDVNEAIRLMEMSKDSLLGDKGQTARTQRPADV
IFATVRELVSGGRSVRFSEAEQRCVSRGFTPAQFQAALDEYEELNVWQVNASRTRITFV
Sequence of entity 6 (5), FASTA
>22VT_6 DNA replication licensing factor MCM5 (chains 5)
MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEV
LQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLT
NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGLTTSRGRDRVGVGIRSSYIRVLGIQ
VDTDGSGRSFAGAVSPQEEEEFRRLAALPNVYEVISKSIAPSIFGGTDMKKAIACLLFGG
SRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVMR
DPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNS
RCSVLAAANSVFGRWDETKGEDNIDFMPTILSRFDMIFIVKDEHNEERDVMLAKHVITLH
VSALTQTQAVEGEIDLAKLKKFIAYCRVKCGPRLSAEAAEKLKNRYIIMRSGARQHERDS
DRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAALSGTLSGV
EGFTSQEDQEMLSRIEKQLKRRFAIGSQVSEHSIIKDFTKQKYPEHAIHKVLQLMLRRGE
IQHRMQRKVLYRLK

Ligands and cofactors

IDNameFormulaCopies
MGMagnesium ionMg3
ZNZinc ionZn4
ATPAdenosine-5'-triphosphateC10 H16 N5 O13 P33
ADPAdenosine-5'-diphosphateC10 H15 N5 O10 P22

Primary citation

Structure of human MCM2-7 single hexamer with MCM3-WHD containing Meier-Gorlin Syndrome mutation (Q761L) attached to MCM2-CTD. Lam, W.H., Fan, X., Zhai, Y. To be published.

Other PDB entries of the same protein (UniProt P49736 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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