2X04: PABC-TNRC6C complex

Crystal structure of the PABC-TNRC6C complex. Determined by X-ray diffraction at 1.49 Å resolution. Released 19 Jan 2010.

Method: X-ray diffraction
Resolution: 1.49 Å
Organism: HOMO SAPIENS
Chains: 4
Atoms: 1,671
Mol. weight: 21.57 kDa
Released: 19 Jan 2010

Explore 2X04 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

2X04 contains 14 α-helices and 0 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 6 helices, 0 β-strands

Element	Residues	Length
α-helix	541-544	4
α-helix	547-551	5
α-helix	555-573	19
α-helix	578-585	8
α-helix	590-598	9
α-helix	600-614	15

Chain B: 6 helices, 0 β-strands

Element	Residues	Length
α-helix	541-544	4
α-helix	547-552	6
α-helix	555-573	19
α-helix	578-585	8
α-helix	590-598	9
α-helix	600-617	18

Chain C: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	1386-1388	3

Chain D: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	1386-1389	4

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Polyadenylate-binding protein 1	A, B	protein	80	HOMO SAPIENS	P11940 (AlphaFold model)
Trinucleotide repeat-containing gene 6C protein	C, D	protein	18	HOMO SAPIENS	Q9HCJ0 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>2X04_1 POLYADENYLATE-BINDING PROTEIN 1 (chains A, B)
GPLGSLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQA

Sequence of entity 2 (C, D), FASTA

>2X04_2 TRINUCLEOTIDE REPEAT-CONTAINING GENE 6C PROTEIN (chains C, D)
SINWPPEFHPGVPWKGLQ

Primary citation

Structural Insights Into the Human Gw182-Pabc Interaction in Microrna-Mediated Deadenylation. Jinek, M., Fabian, M.R., Coyle, S.M. et al. Nat Struct Mol Biol (2010) 17:238. DOI 10.1038/NSMB.1768 · PubMed

Other PDB entries of the same protein (UniProt P11940 (AlphaFold model), which also has an AlphaFold model), best resolution first:

3KUJ 1.4 Å, Crystal structure of C-terminal domain of PABPC1 in complex with binding region of eRF3a
3KUS 1.4 Å, Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the…
3KTP 1.5 Å, Structural basis of GW182 recognition by poly(A)-binding protein
3KUT 1.5 Å, Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the…
3KTR 1.7 Å, Structural basis of ataxin-2 recognition by poly(A)-binding protein
3PTH 1.7 Å, The PABC1 MLLE domain bound to the variant PAM2 motif of LARP4B
3PKN 1.8 Å, Crystal structure of MLLE domain of poly(A) binding protein in complex with PAM2 motif…
4F25 1.9 Å, Crystal structure of the second RRM domain of human PABPC1 at pH 6.0
5DX1 1.93 Å, Crystal structure of CARM1, sinefungin, and PABP1 peptide (R455)
7BN3 1.93 Å, Crystal structure of C-terminal domain of PABPC1 in complex with Nucleoprotein from…
5DX8 1.94 Å, Crystal structure of CARM1, sinefungin, and methylated PABP1 peptide (R455)
4F02 2.0 Å, Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and…

Browse structure collections

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