3ECS: Human eIF2B alpha
Crystal structure of human eIF2B alpha. Determined by X-ray diffraction at 2.65 Å resolution. Released 1 Sept 2009.
- Method
- X-ray diffraction
- Resolution
- 2.65 Å
- Organism
- Homo sapiens
- Chains
- 8
- Atoms
- 17,958
- Mol. weight
- 283.03 kDa
- Released
- 1 Sept 2009
Explore 3ECS in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
3ECS contains 150 α-helices and 95 β-strands across 8 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 19 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-16 | 14 | |
| α-helix | 22-34 | 13 | |
| α-helix | 44-54 | 11 | |
| α-helix | 63-75 | 13 | |
| α-helix | 92-104 | 13 | |
| α-helix | 107-115 | 9 | |
| α-helix | 116-118 | 3 | |
| β-strand | 123-127 | 5 | 1 |
| α-helix | 132-142 | 11 | |
| β-strand | 148-153 | 6 | 1 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 1 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-196 | 5 | 1 |
| β-strand | 199-200 | 2 | 2 |
| β-strand | 206-209 | 4 | 2 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 1 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 2 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-250 | 3 | |
| β-strand | 268 | 1 | 3 |
| β-strand | 273-276 | 4 | 2 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 1 |
| β-strand | 289-291 | 3 | 1 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-304 | 9 | |
Chain B: 18 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-15 | 13 | |
| α-helix | 22-35 | 14 | |
| α-helix | 46-58 | 13 | |
| α-helix | 63-74 | 12 | |
| α-helix | 92-103 | 12 | |
| α-helix | 107-115 | 9 | |
| α-helix | 116-118 | 3 | |
| β-strand | 124-127 | 4 | 4 |
| α-helix | 132-142 | 11 | |
| β-strand | 149-153 | 5 | 4 |
| α-helix | 160-170 | 11 | |
| β-strand | 175-178 | 4 | 4 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-187 | 5 | |
| β-strand | 192-196 | 5 | 4 |
| β-strand | 199-200 | 2 | 5 |
| β-strand | 206-209 | 4 | 5 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 4 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 5 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 267-268 | 2 | 6 |
| β-strand | 273-276 | 4 | 5 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 4 |
| β-strand | 289-291 | 3 | 4 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-305 | 10 | |
Chain C: 21 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-16 | 14 | |
| α-helix | 22-36 | 15 | |
| α-helix | 37-39 | 3 | |
| α-helix | 44-47 | 4 | |
| α-helix | 49-58 | 10 | |
| α-helix | 63-76 | 14 | |
| α-helix | 88-90 | 3 | |
| α-helix | 93-103 | 11 | |
| α-helix | 107-113 | 7 | |
| α-helix | 116-118 | 3 | |
| β-strand | 124-128 | 5 | 3 |
| α-helix | 132-142 | 11 | |
| β-strand | 149-153 | 5 | 3 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 3 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-195 | 4 | 3 |
| β-strand | 199-200 | 2 | 7 |
| β-strand | 206-209 | 4 | 7 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 3 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 7 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 266-268 | 3 | 1 |
| β-strand | 273-276 | 4 | 7 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 3 |
| β-strand | 289-291 | 3 | 3 |
| α-helix | 293-303 | 11 | |
Chain D: 17 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-16 | 14 | |
| α-helix | 22-36 | 15 | |
| α-helix | 43-49 | 7 | |
| α-helix | 63-76 | 14 | |
| α-helix | 93-116 | 24 | |
| β-strand | 124-127 | 4 | 8 |
| α-helix | 132-143 | 12 | |
| β-strand | 149-153 | 5 | 8 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 8 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-195 | 4 | 8 |
| β-strand | 199-200 | 2 | 9 |
| β-strand | 206-209 | 4 | 9 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 8 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 9 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 265-266 | 2 | 10 |
| β-strand | 273-276 | 4 | 9 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 8 |
| β-strand | 289-291 | 3 | 8 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-305 | 10 | |
Chain E: 18 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-16 | 14 | |
| α-helix | 22-35 | 14 | |
| α-helix | 43-49 | 7 | |
| α-helix | 63-75 | 13 | |
| α-helix | 92-103 | 12 | |
| α-helix | 107-114 | 8 | |
| β-strand | 124-128 | 5 | 10 |
| α-helix | 132-142 | 11 | |
| β-strand | 149-153 | 5 | 10 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 10 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-195 | 4 | 10 |
| β-strand | 199-200 | 2 | 11 |
| β-strand | 206-209 | 4 | 11 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 10 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 11 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 266-269 | 4 | 8 |
| β-strand | 273-276 | 4 | 11 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-287 | 5 | 10 |
| β-strand | 289-291 | 3 | 10 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-304 | 9 | |
Chain F: 17 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-15 | 13 | |
| α-helix | 22-35 | 14 | |
| α-helix | 43-57 | 15 | |
| α-helix | 63-74 | 12 | |
| α-helix | 93-115 | 23 | |
| α-helix | 116-118 | 3 | |
| β-strand | 124-128 | 5 | 12 |
| α-helix | 132-143 | 12 | |
| β-strand | 149-153 | 5 | 12 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 12 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-195 | 4 | 12 |
| β-strand | 199-201 | 3 | 13 |
| β-strand | 206-209 | 4 | 13 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 12 |
| α-helix | 232-234 | 3 | |
| β-strand | 235-236 | 2 | 13 |
| α-helix | 243-245 | 3 | |
| β-strand | 267-268 | 2 | 14 |
| β-strand | 273-276 | 4 | 13 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 12 |
| β-strand | 289-291 | 3 | 12 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-304 | 9 | |
Chain G: 20 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-14 | 12 | |
| α-helix | 22-36 | 15 | |
| α-helix | 44-51 | 8 | |
| α-helix | 56-59 | 4 | |
| α-helix | 63-74 | 12 | |
| α-helix | 93-103 | 11 | |
| α-helix | 104-106 | 3 | |
| α-helix | 107-115 | 9 | |
| β-strand | 124-128 | 5 | 14 |
| α-helix | 132-142 | 11 | |
| β-strand | 149-153 | 5 | 14 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 14 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-196 | 5 | 14 |
| β-strand | 199-200 | 2 | 15 |
| β-strand | 206-209 | 4 | 15 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 14 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 15 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 267-269 | 3 | 12 |
| β-strand | 273-276 | 4 | 15 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 14 |
| β-strand | 289-291 | 3 | 14 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-304 | 9 | |
Chain H: 20 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-15 | 13 | |
| α-helix | 22-36 | 15 | |
| α-helix | 46-49 | 4 | |
| α-helix | 63-75 | 13 | |
| α-helix | 88-90 | 3 | |
| α-helix | 93-103 | 11 | |
| α-helix | 107-113 | 7 | |
| α-helix | 116-118 | 3 | |
| β-strand | 124-128 | 5 | 6 |
| α-helix | 132-143 | 12 | |
| β-strand | 149-153 | 5 | 6 |
| α-helix | 160-169 | 10 | |
| β-strand | 175-178 | 4 | 6 |
| α-helix | 180-182 | 3 | |
| α-helix | 183-186 | 4 | |
| α-helix | 187-189 | 3 | |
| β-strand | 192-196 | 5 | 6 |
| β-strand | 199-200 | 2 | 16 |
| β-strand | 206-209 | 4 | 16 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-229 | 4 | 6 |
| α-helix | 232-234 | 3 | |
| β-strand | 235 | 1 | 16 |
| α-helix | 243-245 | 3 | |
| α-helix | 248-251 | 4 | |
| β-strand | 273-276 | 4 | 16 |
| α-helix | 278-280 | 3 | |
| β-strand | 283-286 | 4 | 6 |
| β-strand | 289-291 | 3 | 6 |
| α-helix | 293-295 | 3 | |
| α-helix | 296-304 | 9 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Translation initiation factor eIF-2B subunit alpha | A, B, C, D, E, F, G, H | protein | 315 | Homo sapiens | Q14232 (AlphaFold model) |
Sequence of entity 1 (A, B, C, D, E, F, G, H), FASTA
>3ECS_1 Translation initiation factor eIF-2B subunit alpha (chains A, B, C, D, E, F, G, H)
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVD
SSVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIK
DGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLD
AAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
LNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL
IKLYLAAAEHHHHHH
Primary citation
Crystal structure of the alpha subunit of human translation initiation factor 2B. Hiyama, T.B., Ito, T., Imataka, H. et al. J Mol Biol (2009) 392:937-951. DOI 10.1016/j.jmb.2009.07.054 · PubMed
Other PDB entries of the same protein (UniProt Q14232 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9Y4B 2.1 Å, Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta…
- 9ZUZ 2.25 Å, Translation Initiation Factor eIF-2B complex with the Isohexide Diamine GSK735
- 7VLK 2.27 Å, eIF2B-SFSV NSs C2-imposed
- 9Y3U 2.4 Å, Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta…
- 9Y4W 2.4 Å, Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta…
- 7F64 2.42 Å, eIF2B-SFSV NSs
- 9Y3T 2.5 Å, Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta…
- 7RLO 2.6 Å, Structure of the human eukaryotic translation initiation factor 2B (eIF2B) in complex…
- 7KMA 2.7 Å, Crystal structure of eif2Balpha with a ligand.
- 9HVE 2.7 Å, Native human eIF2-eIF2B complex
- 7F66 2.76 Å, eIF2B-SFSV NSs-1-eIF2
- 9Y5T 2.78 Å, eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
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