3VTU: Human LC3B_2-119

Crystal structure of human LC3B_2-119. Determined by X-ray diffraction at 1.6 Å resolution. Released 26 Jun 2013.

Method: X-ray diffraction
Resolution: 1.6 Å
Organism: Homo sapiens
Chains: 1
Atoms: 1,148
Mol. weight: 14.96 kDa
Released: 26 Jun 2013

Explore 3VTU in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3VTU contains 7 α-helices and 7 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 7 helices, 7 β-strands

Element	Residues	Length	Sheet
α-helix	6-8	3
α-helix	11-14	4
α-helix	17-30	14
β-strand	34-41	8	1
α-helix	49-51	3
β-strand	55-59	5	1
β-strand	63	1	2
α-helix	64-74	11
β-strand	84-87	4	1
β-strand	90-91	2	1
β-strand	98	1	2
α-helix	99-106	8
α-helix	112	1
β-strand	113-118	6	1

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Microtubule-associated proteins 1A/1B light chain 3B	A	protein	123	Homo sapiens	Q9GZQ8 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>3VTU_1 Microtubule-associated proteins 1A/1B light chain 3B (chains A)
GSPEFPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD
HVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQ
ETF

Primary citation

Structural basis for phosphorylation-triggered autophagic clearance of Salmonella. Rogov, V.V., Suzuki, H., Fiskin, E. et al. Biochem J (2013) 454:459-466. DOI 10.1042/BJ20121907 · PubMed

Other PDB entries of the same protein (UniProt Q9GZQ8 (AlphaFold model), which also has an AlphaFold model), best resolution first:

8Q53 1.36 Å, Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain…
6LAN 1.41 Å, Structure of CCDC50 and LC3B complex
5D94 1.53 Å, Crystal structure of LC3-LIR peptide complex
5MS5 1.53 Å, Low-salt structure of RavZ LIR2-fused human LC3B
2ZJD 1.56 Å, Crystal Structure of LC3-p62 complex
7GAG 1.59 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…
7GAU 1.59 Å, PanDDA analysis group deposition of ground-state model of MAP1LC3B
7ELG 1.6 Å, LC3B modificated with a covalent probe
8Q7K 1.6 Å, IRGQ LIR2 peptide in complex with LC3B
7GAP 1.68 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…
7GAO 1.69 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…
3VTV 1.7 Å, Crystal structure of Optineurin LIR-fused human LC3B_2-119

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