4O9Y: TcdA1

Crystal Structure of TcdA1. Determined by X-ray diffraction at 3.5 Å resolution. Released 26 Feb 2014.

Method
X-ray diffraction
Resolution
3.5 Å
Organism
Photorhabdus luminescens
Chains
10
Atoms
197,663
Mol. weight
2832.29 kDa
Released
26 Feb 2014

Explore 4O9Y in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

4O9Y contains 1,144 α-helices and 1,006 β-strands across 10 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 113 helices, 98 β-strands

ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand10411
α-helix1051
β-strand11112
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand14913
α-helix152-1565
β-strand16014
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand30015
β-strand30615
β-strand30916
β-strand312-31986
β-strand324-336136
β-strand341-34997
β-strand352-35987
β-strand367-37156
β-strand377-38156
α-helix384-3852
β-strand390-39677
α-helix399-4024
β-strand406-41496
β-strand418-432156
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
β-strand50818
β-strand51118
α-helix512-5132
α-helix514-5196
β-strand536-53729
α-helix546-55510
α-helix559-56911
β-strand577-57829
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix749-76921
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8395
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand98214
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-106410
α-helix1071-108919
β-strand1091-1098810
β-strand1107-1114810
β-strand1120-1127810
β-strand1141110
β-strand1145-1146210
β-strand1159-1163511
β-strand1166-11791411
β-strand1191-12021211
β-strand1203112
α-helix12081
β-strand1209112
α-helix1210-12123
β-strand1213-1216411
α-helix1218-12236
β-strand1234-1238513
β-strand1239114
β-strand1245-1249513
β-strand1265-1269513
β-strand1275-1278413
α-helix12791
α-helix1280-128910
α-helix13031
β-strand1304110
α-helix13051
β-strand1306114
β-strand1310-1311215
β-strand1316116
β-strand1321-1323315
β-strand1331117
β-strand1337116
β-strand1340-1345618
β-strand1348-1353618
β-strand1356-1359419
β-strand1360117
α-helix13631
α-helix1367-137812
β-strand1384-1392920
β-strand1405-1410620
β-strand1420-1425620
β-strand1432-1437620
β-strand1444-1450720
β-strand1454-1458520
α-helix1466-14683
β-strand1471-1475520
β-strand1480-14901120
β-strand1499-1504615
β-strand1507-1512615
α-helix1513-15164
β-strand1517121
α-helix1521-15233
β-strand1528-1531419
β-strand1532121
β-strand1535-1539518
α-helix15411
α-helix1543-15442
β-strand1545115
β-strand1548-15581115
β-strand1564-15761315
β-strand1585-1587322
β-strand1595-1598422
β-strand1601-1604422
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-1635323
β-strand1641-1647724
β-strand1661-1666625
β-strand1673-1679725
β-strand1686-1692724
β-strand1705-1711725
β-strand1724-1728525
β-strand1732-1735425
β-strand1746-1750524
β-strand1755-1757323
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178410
α-helix1789-17979
β-strand1800126
β-strand1806-1807227
β-strand1810-1811227
β-strand1816126
α-helix1819-18224
α-helix1831-18333
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand190613
α-helix1907-19104
α-helix1913-192715
α-helix19481
β-strand194912
α-helix19501
β-strand195111
α-helix1954-197118
α-helix1983-19853
α-helix1993-19953
α-helix2009-20124
β-strand2017128
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-2336829
α-helix2337-23426
α-helix2353-236210
β-strand2367-2368230
β-strand2375-2377330
β-strand2387-2392630
α-helix2393-23964
α-helix2398-24014
β-strand2410-2418929
β-strand2431-2435530
β-strand2448-2450330
β-strand2456-2457229
β-strand2468128
α-helix2469-24702
β-strand2475-2476229
β-strand2481-2486630
α-helix2498-25036
β-strand2508-2515829
Chain B: 118 helices, 97 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand104131
α-helix1051
β-strand111132
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand149133
α-helix152-1565
β-strand160134
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix257-26711
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand300135
β-strand306135
β-strand312-319836
β-strand324-3361336
β-strand341-349937
β-strand352-359837
β-strand367-371536
β-strand377-381536
α-helix384-3852
β-strand390-396737
α-helix399-4035
β-strand406-414936
β-strand418-4321536
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
α-helix511-5133
α-helix514-5196
β-strand536-537238
α-helix546-55510
α-helix559-56911
β-strand577-578238
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8384
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix904-9063
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand982134
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
β-strand1046139
β-strand1049139
α-helix1055-10639
α-helix1071-108919
β-strand1091-1098840
β-strand1107-1114840
β-strand1121-1122240
β-strand1123141
β-strand1125-1127340
β-strand1145141
β-strand1159-1163542
β-strand1166-11791442
β-strand1191-12021242
β-strand1203143
α-helix12081
β-strand1209143
α-helix1210-12123
β-strand1213-1216442
α-helix1218-12236
β-strand1234-1238544
β-strand1239145
β-strand1245-1249544
β-strand1265-1269544
β-strand1275-1277344
α-helix1278-12792
α-helix1280-128910
α-helix13031
β-strand1304140
α-helix13051
β-strand1306145
β-strand1310-1311246
β-strand1316147
β-strand1323146
β-strand1331148
β-strand1337147
β-strand1340-1345649
β-strand1348-1353649
β-strand1356-1359450
β-strand1360148
α-helix1363-13642
α-helix1367-137812
β-strand1384-1392951
β-strand1405-1410651
β-strand1420-1425651
β-strand1432-1437651
β-strand1444-1450751
β-strand1454-1458551
α-helix14591
α-helix1466-14683
β-strand1471-1475551
β-strand1480-14901151
β-strand1499-1504646
β-strand1507-1510446
α-helix1513-15164
α-helix1521-15233
β-strand1528-1531450
β-strand1535-1539549
α-helix15411
α-helix1543-15442
β-strand1545146
β-strand1548-15581146
β-strand1564-15761346
α-helix1577-15782
α-helix1582-15843
β-strand1585-1588452
β-strand1594-1598552
β-strand1601-1604452
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-1635353
β-strand1642-1647654
β-strand1660-1666755
β-strand1674-1680755
β-strand1686-1691654
β-strand1705-1711755
β-strand1714155
β-strand1724-1728555
β-strand1732-1735455
β-strand1746-1750554
β-strand1755-1757353
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178410
α-helix1789-17979
β-strand1800156
β-strand1806-1807257
β-strand1810-1811257
β-strand1816156
α-helix1819-18224
α-helix1831-18333
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand1906133
α-helix1907-19104
α-helix1913-192715
α-helix1943-19453
α-helix19481
β-strand1949132
α-helix19501
β-strand1951131
α-helix1954-197118
α-helix1983-19853
α-helix1992-19943
α-helix2009-20124
β-strand2017158
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-2336859
α-helix2337-23437
α-helix2353-236210
β-strand2367-2368260
β-strand2375-2377360
β-strand2387-2392660
α-helix2393-23964
α-helix2398-24003
β-strand2410-2418959
β-strand2431-2435560
β-strand2447-2450460
β-strand2456-2457259
β-strand2468158
α-helix2469-24702
β-strand2475-2476259
β-strand2481-2486660
α-helix2498-25025
β-strand2508-2515859
Chain C: 112 helices, 104 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-368
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand104161
α-helix1051
β-strand111162
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand149163
α-helix152-1565
β-strand160164
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand300165
β-strand306165
β-strand309166
β-strand312-319866
β-strand324-3361366
β-strand342-349867
β-strand352-358767
β-strand367-371566
β-strand377-381566
α-helix384-3852
β-strand391-396667
α-helix399-4035
β-strand406-414966
β-strand418-4321566
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
β-strand508168
β-strand511168
α-helix512-5132
α-helix514-5196
β-strand536-537269
α-helix546-55510
α-helix559-56911
β-strand577-578269
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix749-76921
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix834-8396
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix904-9063
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand982164
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-10639
α-helix1071-108919
β-strand1091-1098870
β-strand1107-1114870
β-strand1119171
β-strand1120-1122370
β-strand1123172
β-strand1125-1127370
β-strand1145172
β-strand1151171
β-strand1159-1163573
β-strand1166-11791473
β-strand1191-12021273
β-strand1203174
α-helix12081
β-strand1209174
α-helix1210-12123
β-strand1213-1216473
α-helix1218-12236
β-strand1233-1238675
β-strand1239176
α-helix12441
β-strand1245-1250675
β-strand1265-1269575
β-strand1275-1278475
α-helix12791
α-helix1280-128910
α-helix13031
β-strand1304170
α-helix13051
β-strand1306176
β-strand1310-1311277
β-strand1316178
β-strand1321-1323377
β-strand1324179
β-strand1331179
β-strand1337178
β-strand1340-1345680
β-strand1348-1353680
β-strand1356-1359481
β-strand1360179
α-helix1363-13642
α-helix1367-137812
β-strand1384-1392982
β-strand1405-1410682
β-strand1420-1425682
β-strand1432-1437682
β-strand1444-1450782
β-strand1454-1459682
α-helix1466-14683
β-strand1471-1475582
β-strand1480-14901182
β-strand1499-1504677
β-strand1507-1512677
α-helix1513-15164
β-strand1517183
α-helix1520-15234
β-strand1528-1531481
β-strand1532183
β-strand1535-1539580
α-helix15411
α-helix1543-15442
β-strand1545177
β-strand1548-15581177
β-strand1564-15761377
β-strand1585-1587384
β-strand1595-1598484
β-strand1601-1604484
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-1634285
β-strand1642-1647686
β-strand1661-1666687
β-strand1674-1679687
β-strand1686-1691686
β-strand1705-1711787
β-strand1724-1728587
β-strand1732-1736587
β-strand1746-1750586
β-strand1756-1757285
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178511
α-helix1789-17979
β-strand1800188
β-strand1806-1807289
β-strand1810-1811289
β-strand1816188
α-helix1819-18224
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand1906163
α-helix1907-19104
α-helix1913-192816
α-helix19481
β-strand1949162
α-helix19501
β-strand1951161
α-helix1954-197118
β-strand1974190
β-strand1980190
α-helix1983-19875
α-helix2009-20124
β-strand2017191
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-2336892
α-helix2337-23437
α-helix2353-236210
β-strand2368193
β-strand2375-2377393
β-strand2387-2392693
α-helix2398-24003
β-strand2410-2418992
β-strand2431-2435593
β-strand2448-2450393
β-strand2456-2457292
β-strand2468191
α-helix2469-24702
β-strand2475-2476292
β-strand2481-2486693
α-helix2498-25036
β-strand2508-2515892
Chain D: 114 helices, 101 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand104194
α-helix1051
β-strand111195
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand149196
α-helix152-1565
β-strand160197
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand300198
β-strand306198
β-strand309199
β-strand312-319899
β-strand324-3361399
β-strand341-3499100
β-strand352-3598100
β-strand367-371599
β-strand377-381599
α-helix384-3852
β-strand390-3967100
α-helix399-4035
β-strand406-414999
β-strand418-4321599
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
β-strand5081101
β-strand5111101
α-helix512-5132
α-helix514-5196
β-strand536-5372102
α-helix546-55510
α-helix559-56911
β-strand577-5782102
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69710
α-helix705-71814
α-helix727-73711
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8395
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand982197
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-10639
α-helix1071-108919
β-strand1091-10988103
β-strand1107-11148103
β-strand1120-11223103
β-strand11231104
β-strand1125-11273103
β-strand11451104
β-strand1159-11635105
β-strand1166-117914105
β-strand1191-120212105
β-strand12031106
β-strand12091106
α-helix1211-12122
β-strand1213-12153105
α-helix1218-12236
β-strand1233-12386107
β-strand12391108
β-strand1245-12506107
β-strand1265-12695107
β-strand1275-12784107
α-helix12791
α-helix1280-128910
α-helix1303-13053
β-strand13061108
β-strand1310-13112109
β-strand13161110
β-strand13231109
β-strand13311111
β-strand13371110
β-strand1340-13456112
β-strand1348-13536112
β-strand1356-13594113
β-strand13601111
α-helix13631
α-helix1367-137812
β-strand1384-13929114
β-strand1405-14106114
β-strand1420-14256114
β-strand1432-14376114
β-strand1444-14507114
β-strand1454-14585114
α-helix14591
α-helix1466-14683
β-strand1471-14755114
β-strand1480-149011114
β-strand14931115
β-strand1499-15046109
β-strand1507-15104109
α-helix1513-15164
β-strand15171116
α-helix1521-15233
β-strand1528-15314113
β-strand15321116
β-strand1535-15395112
α-helix15411
α-helix1543-15442
β-strand15451109
β-strand1548-155811109
β-strand15591115
β-strand1564-157613109
α-helix1582-15843
β-strand1585-15884117
β-strand1594-15985117
β-strand1601-16044117
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-16353118
β-strand1642-16476119
β-strand1661-16666120
β-strand1674-16796120
β-strand1686-16916119
β-strand1705-17117120
β-strand17141120
β-strand1724-17285120
β-strand1732-17354120
β-strand1746-17505119
β-strand1755-17573118
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178410
α-helix1789-17979
β-strand18001121
β-strand1806-18072122
β-strand1810-18112122
β-strand18161121
α-helix1819-18224
α-helix1831-18333
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand1906196
α-helix1907-19104
α-helix1913-192816
α-helix1943-19453
α-helix19481
β-strand1949195
α-helix19501
β-strand1951194
α-helix1954-197118
α-helix1983-19853
α-helix1992-19943
α-helix2009-20124
β-strand20171123
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-23368124
α-helix2337-23426
α-helix2353-236210
β-strand2367-23682125
β-strand2375-23773125
β-strand2387-23926125
α-helix2393-23964
α-helix2398-24003
β-strand2410-24189124
β-strand2431-24355125
β-strand2448-24503125
β-strand2456-24572124
β-strand24681123
α-helix2469-24702
β-strand24761124
β-strand2481-24866125
α-helix2498-25036
β-strand2508-25158124
Chain E: 113 helices, 98 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand1041126
α-helix1051
β-strand1111127
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand1491128
α-helix152-1565
β-strand1601129
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand3001130
β-strand3061130
β-strand3091131
β-strand312-3198131
β-strand324-33613131
β-strand341-3499132
β-strand352-3598132
β-strand367-3715131
β-strand377-3815131
α-helix384-3852
β-strand391-3966132
α-helix399-4035
β-strand407-4137131
β-strand419-43214131
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
β-strand5081133
β-strand5111133
α-helix512-5132
α-helix514-5185
β-strand536-5372134
α-helix546-55510
α-helix559-56911
β-strand577-5782134
α-helix582-59716
α-helix602-61211
α-helix624-64320
α-helix648-6558
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix749-76921
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix834-8396
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand9821129
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103710
α-helix1055-10639
α-helix1071-108919
β-strand1091-10988135
β-strand1107-11148135
β-strand1120-11278135
β-strand1145-11462135
β-strand1159-11635136
β-strand1166-117914136
β-strand1191-120212136
β-strand12031137
α-helix12081
β-strand12091137
α-helix1210-12123
β-strand1213-12164136
α-helix1218-12236
β-strand1234-12385138
β-strand12391139
β-strand1245-12495138
β-strand1265-12695138
β-strand1275-12773138
α-helix1278-12792
α-helix1280-128910
α-helix1303-13053
β-strand13061139
β-strand1310-13112140
β-strand13161141
β-strand13231140
β-strand13241142
β-strand13311142
β-strand13371141
β-strand1340-13456143
β-strand1348-13536143
β-strand1356-13594144
β-strand13601142
α-helix13631
α-helix1367-137812
β-strand1384-13929145
β-strand1405-14106145
β-strand1420-14256145
β-strand1432-14376145
β-strand1444-14507145
β-strand1454-14585145
α-helix1466-14683
β-strand1471-14755145
β-strand1480-149011145
β-strand1499-15046140
β-strand1507-15126140
α-helix1513-15164
β-strand15171146
α-helix1521-15233
β-strand1528-15314144
β-strand15321146
β-strand1535-15395143
α-helix15411
α-helix1543-15442
β-strand15451140
β-strand1548-155811140
β-strand1564-157613140
α-helix1582-15843
β-strand1585-15884147
β-strand1594-15985147
β-strand1601-16044147
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-16353148
β-strand1642-16476149
β-strand1661-16666150
β-strand1674-16796150
β-strand1686-16916149
β-strand1705-17117150
β-strand17141150
β-strand1724-17285150
β-strand1732-17365150
β-strand1746-17505149
β-strand1755-17573148
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178410
α-helix1789-17979
β-strand18001151
β-strand1806-18072152
β-strand1810-18112152
β-strand18161151
α-helix1819-18224
α-helix1831-18333
α-helix1837-18437
α-helix1846-186924
α-helix1873-189018
α-helix1893-18953
β-strand19061128
α-helix1907-19104
α-helix1913-192816
α-helix19481
β-strand19491127
α-helix19501
β-strand19511126
α-helix1954-197118
α-helix1983-19853
α-helix1992-19943
α-helix2009-20124
β-strand20171153
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-23368154
α-helix2337-23437
α-helix2353-236210
β-strand2367-23682155
β-strand2375-23773155
β-strand2387-23915155
α-helix2393-23964
α-helix2398-24003
β-strand2410-24189154
β-strand2431-24355155
β-strand2448-24503155
β-strand2456-24572154
β-strand24681153
α-helix2469-24702
β-strand24761154
β-strand2482-24865155
α-helix2498-25025
β-strand2508-25158154
Chain F: 114 helices, 104 β-strands
ElementResiduesLengthSheet
α-helix19-235
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand1041156
α-helix1051
β-strand1111157
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand1491158
α-helix152-1565
β-strand1601159
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand3001160
β-strand3061160
β-strand3091161
β-strand312-3198161
β-strand324-33613161
β-strand341-3499162
β-strand352-3598162
β-strand367-3715161
β-strand377-3815161
α-helix384-3852
β-strand390-3967162
α-helix399-4035
β-strand406-4149161
β-strand418-43215161
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4987
α-helix501-5044
β-strand5081163
β-strand5111163
α-helix512-5132
α-helix514-5196
β-strand536-5372164
α-helix546-55510
α-helix559-56911
β-strand577-5782164
α-helix582-59716
α-helix602-61211
α-helix624-64320
α-helix648-6558
α-helix665-67713
α-helix688-69710
α-helix705-71814
α-helix727-73711
α-helix749-76921
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8384
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix904-9063
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand9821159
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-10639
α-helix1071-108919
β-strand1091-10988165
β-strand1107-11148165
β-strand1120-11223165
β-strand11231166
β-strand1125-11273165
β-strand11451166
β-strand1159-11635167
β-strand1166-117914167
β-strand1191-120212167
β-strand12031168
α-helix12081
β-strand12091168
α-helix1210-12123
β-strand1213-12153167
α-helix1218-12225
β-strand1234-12385169
β-strand12391170
α-helix12441
β-strand1245-12495169
β-strand1265-12695169
β-strand1275-12773169
α-helix1278-12792
α-helix1280-128910
α-helix13031
β-strand13041165
α-helix13051
β-strand13061170
β-strand1310-13112171
β-strand13161172
β-strand13231171
β-strand13241173
β-strand13311173
β-strand13371172
β-strand1340-13445174
β-strand1349-13535174
β-strand1356-13594175
β-strand13601173
α-helix1363-13642
α-helix1367-137812
β-strand1384-13929176
β-strand1405-14106176
β-strand1420-14256176
β-strand14321177
β-strand1434-14374176
β-strand1444-14463176
β-strand14501177
β-strand1454-14585176
α-helix1466-14683
β-strand1471-14755176
β-strand1480-149011176
β-strand14931178
β-strand1499-15046171
β-strand1507-15104171
α-helix1513-15164
β-strand15171179
α-helix1521-15233
β-strand1528-15314175
β-strand15321179
β-strand1535-15395174
α-helix15411
α-helix1543-15442
β-strand15451171
β-strand1548-155811171
β-strand15591178
β-strand1564-157613171
β-strand1585-15862180
β-strand1595-15984180
β-strand1601-16044180
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-16353181
β-strand1641-16477182
β-strand1661-16666183
β-strand1674-16796183
β-strand1686-16927182
β-strand1705-17117183
β-strand1724-17285183
β-strand1732-17354183
β-strand1746-17505182
β-strand1755-17573181
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178511
α-helix1789-17979
β-strand18001184
β-strand1806-18072185
β-strand1810-18112185
β-strand18161184
α-helix1819-18224
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand19061158
α-helix1907-19104
α-helix1913-192715
α-helix19481
β-strand19491157
α-helix19501
β-strand19511156
α-helix1954-197118
α-helix1983-19875
α-helix1992-19943
α-helix2009-20124
β-strand20171186
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-23368187
α-helix2337-23437
α-helix2353-236210
β-strand2367-23682188
β-strand2375-23773188
β-strand2387-23926188
α-helix2393-23964
α-helix2398-24014
β-strand2410-24189187
β-strand2431-24355188
β-strand2448-24503188
β-strand2456-24572187
β-strand24681186
α-helix2469-24702
β-strand2475-24762187
β-strand2481-24866188
α-helix2498-25036
β-strand2508-25158187
Chain G: 114 helices, 104 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand1041189
α-helix1051
β-strand1111190
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand1491191
α-helix152-1565
β-strand1601192
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand3001193
β-strand3061193
β-strand3091194
β-strand312-3198194
β-strand324-33613194
β-strand343-3497195
β-strand352-3576195
β-strand367-3715194
β-strand377-3815194
α-helix384-3852
β-strand391-3966195
α-helix399-4035
β-strand406-4149194
β-strand418-43215194
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4976
α-helix501-5044
β-strand5081196
β-strand5111196
α-helix512-5132
α-helix514-5196
β-strand536-5372197
α-helix546-55510
α-helix559-56911
β-strand577-5782197
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69710
α-helix705-71814
α-helix727-73711
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix834-8396
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix904-9063
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand9821192
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-10639
α-helix1071-108919
β-strand1091-10988198
β-strand1107-11148198
β-strand1121-11222198
β-strand11231199
β-strand1125-11273198
β-strand11451199
β-strand1159-11635200
β-strand1166-117914200
β-strand1191-120212200
β-strand12031201
α-helix12081
β-strand12091201
α-helix1210-12123
β-strand1213-12164200
α-helix1218-12236
β-strand1234-12385202
β-strand12391203
β-strand1245-12495202
β-strand1265-12695202
β-strand1275-12773202
α-helix1278-12792
α-helix1280-128910
α-helix13031
β-strand13041198
α-helix13051
β-strand13061203
β-strand1310-13112204
β-strand13161205
β-strand1321-13233204
β-strand13311206
β-strand13371205
β-strand1340-13456207
β-strand1348-13536207
β-strand1356-13594208
β-strand13601206
α-helix1363-13642
α-helix1367-137812
β-strand1384-13929209
β-strand1405-14106209
β-strand1420-14256209
β-strand1432-14376209
β-strand1444-14507209
β-strand1454-14585209
α-helix1466-14683
β-strand1471-14755209
β-strand1480-149011209
β-strand14931210
β-strand1499-15046204
β-strand1507-15104204
α-helix1513-15164
β-strand15171211
α-helix1521-15233
β-strand1528-15314208
β-strand15321211
β-strand1535-15395207
α-helix15411
α-helix1543-15442
β-strand15451204
β-strand1548-155811204
β-strand15591210
β-strand1564-157613204
α-helix1582-15843
β-strand1585-15884212
β-strand1594-15985212
β-strand1601-16044212
α-helix1609-161810
α-helix1621-16244
α-helix1627-16304
β-strand1633-16342213
β-strand1641-16477214
β-strand1660-16667215
β-strand1674-16807215
β-strand1686-16927214
β-strand1705-17117215
β-strand17141215
β-strand1724-17285215
β-strand1732-17354215
β-strand1746-17505214
β-strand1756-17572213
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178410
α-helix1789-17979
β-strand18001216
β-strand1806-18072217
β-strand1810-18112217
β-strand18161216
α-helix1819-18224
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand19061191
α-helix1907-19104
α-helix1913-192715
α-helix19481
β-strand19491190
α-helix19501
β-strand19511189
α-helix1954-197118
β-strand19741218
β-strand19801218
α-helix1983-19875
α-helix1992-19954
α-helix2009-20124
β-strand20171219
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-23368220
α-helix2337-23426
α-helix2353-236210
β-strand23681221
β-strand2375-23773221
β-strand2387-23926221
α-helix2393-23964
α-helix2398-24014
β-strand2410-24189220
β-strand2431-24355221
β-strand2448-24503221
β-strand2456-24572220
β-strand24681219
α-helix2469-24702
β-strand2475-24762220
β-strand2481-24866221
α-helix2498-25036
β-strand2508-25158220
Chain H: 114 helices, 96 β-strands
ElementResiduesLengthSheet
α-helix19-246
α-helix29-357
α-helix43-6927
α-helix72-765
α-helix86-9510
α-helix1031
β-strand1041222
α-helix1051
β-strand1111223
α-helix115-12612
α-helix127-1293
α-helix138-1414
α-helix144-1474
β-strand1491224
α-helix152-1565
β-strand1601225
α-helix163-17614
α-helix182-19110
α-helix202-21413
α-helix216-2183
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix260-2678
α-helix273-2775
α-helix279-2868
α-helix290-2967
β-strand3001226
β-strand3061226
β-strand3091227
β-strand312-3198227
β-strand324-33613227
β-strand342-3498228
β-strand352-3587228
β-strand367-3715227
β-strand377-3815227
α-helix384-3852
β-strand390-3967228
α-helix399-4035
β-strand406-4149227
β-strand418-43215227
α-helix433-45018
α-helix454-46411
α-helix472-48716
α-helix492-4976
α-helix501-5044
α-helix512-5132
α-helix514-5196
β-strand536-5372229
α-helix546-55510
α-helix559-56911
β-strand577-5782229
α-helix582-59716
α-helix602-61211
α-helix624-64421
α-helix648-6558
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8395
α-helix843-85513
α-helix871-88616
α-helix891-8999
α-helix904-9063
α-helix909-9113
α-helix912-92413
α-helix928-95225
α-helix964-9718
β-strand9821225
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1055-10639
α-helix1071-108919
β-strand1091-10988230
β-strand1107-11148230
β-strand1120-11278230
β-strand11411230
β-strand11451230
β-strand1159-11635231
β-strand1166-117914231
β-strand1191-120212231
β-strand12031232
α-helix12081
β-strand12091232
α-helix1210-12123
β-strand1213-12164231
α-helix1218-12236
β-strand1234-12385233
β-strand12391234
β-strand1245-12495233
β-strand1265-12695233
β-strand1275-12784233
α-helix12791
α-helix1280-128910
α-helix1303-13053
β-strand13061234
β-strand1310-13112235
β-strand13161236
β-strand13231235
β-strand13311237
β-strand13371236
β-strand1340-13456238
β-strand1348-13536238
β-strand1356-13583239
β-strand13601237
α-helix1363-13642
α-helix1367-137812
β-strand1384-13929240
β-strand1405-14106240
β-strand1420-14256240
β-strand1432-14376240
β-strand1444-14507240
β-strand1454-14585240
α-helix1466-14683
β-strand1471-14755240
β-strand1480-149011240
β-strand14931241
β-strand1499-15046235
β-strand1507-15104235
α-helix1513-15164
α-helix1521-15233
β-strand1529-15313239
β-strand1535-15395238
α-helix15411
α-helix1543-15442
β-strand15451235
β-strand1548-155811235
β-strand15591241
β-strand1564-157613235
β-strand1585-15873242
β-strand1595-15984242
β-strand1601-16044242
α-helix1609-16179
α-helix1621-16244
α-helix1627-16304
β-strand1633-16342243
β-strand1641-16477244
β-strand1661-16666245
β-strand1674-16796245
β-strand1686-16927244
β-strand1705-17117245
β-strand17141245
β-strand1724-17285245
β-strand1732-17354245
β-strand1746-17505244
β-strand1756-17572243
α-helix1758-17592
α-helix1765-17695
α-helix1770-17745
α-helix1775-178511
α-helix1789-17979
β-strand18001246
β-strand1806-18072247
β-strand1810-18112247
β-strand18161246
α-helix1819-18224
α-helix1831-18333
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand19061224
α-helix1907-19104
α-helix1913-192715
α-helix1943-19453
α-helix19481
β-strand19491223
α-helix19501
β-strand19511222
α-helix1954-197118
α-helix1983-19875
α-helix1992-19943
α-helix2009-20124
β-strand20171248
α-helix2019-210486
α-helix2109-212214
α-helix2125-213814
α-helix2156-224388
α-helix2248-228336
α-helix2306-232419
β-strand2329-23368249
α-helix2337-23426
α-helix2353-236210
β-strand2367-23682250
β-strand2375-23773250
β-strand2387-23926250
α-helix2393-23964
α-helix2398-24003
β-strand2410-24189249
β-strand2431-24355250
β-strand2448-24503250
β-strand2456-24572249
β-strand24681248
α-helix2469-24702
β-strand24761249
β-strand2481-24866250
α-helix2498-25036
β-strand2508-25158249

2 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
TcdA1A, B, C, D, E, F, G, H, I, Jprotein2516Photorhabdus luminescensQ9RN43
Sequence of entity 1 (A, B, C, D, E, F, G, H, I, J), FASTA
>4O9Y_1 TcdA1 (chains A, B, C, D, E, F, G, H, I, J)
MNESVKEIPDVLKSQCGFNCLTDISHSSFNEFRQQVSEHLSWSETHDLYHDAQQAQKDNR
LYEARILKRANPQLQNAVHLAILAPNAELIGYNNQFSGRASQYVAPGTVSSMFSPAAYLT
ELYREARNLHASDSVYYLDTRRPDLKSMALSQQNMDIELSTLSLSNELLLESIKTESKLE
NYTKVMEMLSTFRPSGATPYHDAYENVREVIQLQDPGLEQLNASPAIAGLMHQASLLGIN
ASISPELFNILTEEITEGNAEELYKKNFGNIEPASLAMPEYLKRYYNLSDEELSQFIGKA
SNFGQQEYSNNQLITPVVNSSDGTVKVYRITREYTTNAYQMDVELFPFGGENYRLDYKFK
NFYNASYLSIKLNDKRELVRTEGAPQVNIEYSANITLNTADISQPFEIGLTRVLPSGSWA
YAAAKFTVEEYNQYSFLLKLNKAIRLSRATELSPTILEGIVRSVNLQLDINTDVLGKVFL
TKYYMQRYAIHAETALILCNAPISQRSYDNQPSQFDRLFNTPLLNGQYFSTGDEEIDLNS
GSTGDWRKTILKRAFNIDDVSLFRLLKITDHDNKDGKIKNNLKNLSNLYIGKLLADIHQL
TIDELDLLLIAVGEGKTNLSAISDKQLATLIRKLNTITSWLHTQKWSVFQLFIMTSTSYN
KTLTPEIKNLLDTVYHGLQGFDKDKADLLHVMAPYIAATLQLSSENVAHSVLLWADKLQP
GDGAMTAEKFWDWLNTKYTPGSSEAVETQEHIVQYCQALAQLEMVYHSTGINENAFRLFV
TKPEMFGAATGAAPAHDALSLIMLTRFADWVNALGEKASSVLAAFEANSLTAEQLADAMN
LDANLLLQASIQAQNHQHLPPVTPENAFSCWTSINTILQWVNVAQQLNVAPQGVSALVGL
DYIQSMKETPTYAQWENAAGVLTAGLNSQQANTLHAFLDESRSAALSTYYIRQVAKAAAA
IKSRDDLYQYLLIDNQVSAAIKTTRIAEAIASIQLYVNRALENVEENANSGVISRQFFID
WDKYNKRYSTWAGVSQLVYYPENYIDPTMRIGQTKMMDALLQSVSQSQLNADTVEDAFMS
YLTSFEQVANLKVISAYHDNINNDQGLTYFIGLSETDAGEYYWRSVDHSKFNDGKFAANA
WSEWHKIDCPINPYKSTIRPVIYKSRLYLLWLEQKEITKQTGNSKDGYQTETDYRYELKL
AHIRYDGTWNTPITFDVNKKISELKLEKNRAPGLYCAGYQGEDTLLVMFYNQQDTLDSYK
NASMQGLYIFADMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRK
DYGWGDYYLSMVYNGDIPTINYKAASSDLKIYISPKLRIIHNGYEGQKRNQCNLMNKYGK
LGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQGRLLFHRDTTYPSKVEAWIPG
AKRSLTNQNAAIGDDYATDSLNKPDDLKQYIFMTDSKGTATDVSGPVEINTAISPAKVQI
IVKAGGKEQTFTADKDVSIQPSPSFDEMNYQFNALEIDGSGLNFINNSASIDVTFTAFAE
DGRKLGYESFSIPVTLKVSTDNALTLHHNENGAQYMQWQSYRTRLNTLFARQLVARATTG
IDTILSMETQNIQEPQLGKGFYATFVIPPYNLSTHGDERWFKLYIKHVVDNNSHIIYSGQ
LTDTNINITLFIPLDDVPLNQDYHAKVYMTFKKSPSDGTWWGPHFVRDDKGIVTINPKSI
LTHFESVNVLNNISSEPMDFSGANSLYFWELFYYTPMLVAQRLLHEQNFDEANRWLKYVW
SPSGYIVHGQIQNYQWNVRPLLEDTSWNSDPLDSVDPDAVAQHDPMHYKVSTFMRTLDLL
IARGDHAYRQLERDTLNEAKMWYMQALHLLGDKPYLPLSTTWSDPRLDRAADITTQNAHD
SAIVALRQNIPTPAPLSLRSANTLTDLFLPQINEVMMNYWQTLAQRVYNLRHNLSIDGQP
LYLPIYATPADPKALLSAAVATSQGGGKLPESFMSLWRFPHMLENARGMVSQLTQFGSTL
QNIIERQDAEALNALLQNQAAELILTNLSIQDKTIEELDAEKTVLEKSKAGAQSRFDSYG
KLYDENINAGENQAMTLRASAAGLTTAVQASRLAGAAADLVPNIFGFAGGGSRWGAIAEA
TGYVMEFSANVMNTEADKISQSETYRRRRQEWEIQRNNAEAELKQIDAQLKSLAVRREAA
VLQKTSLKTQQEQTQSQLAFLQRKFSNQALYNWLRGRLAAIYFQFYDLAVARCLMAEQAY
RWELNDDSARFIKPGAWQGTYAGLLAGETLMLSLAQMEDAHLKRDKRALEVERTVSLAEV
YAGLPKDNGPFSLAQEIDKLVSQGSGSAGSGNNNLAFGAGTDTKTSLQASVSFADLKIRE
DYPASLGKIRRIKQISVTLPALLGPYQDVQAILSYGDKAGLANGCEALAVSHGMNDSGQF
QLDFNDGKFLPFEGIAIDQGTLTLSFPNASMPEKGKQATMLKTLNDIILHIRYTIK

Primary citation

Mechanism of Tc toxin action revealed in molecular detail. Meusch, D., Gatsogiannis, C., Efremov, R.G. et al. Nature (2014) 508:61-65. DOI 10.1038/nature13015 · PubMed

Other PDB entries of the same protein (UniProt Q9RN43), best resolution first:

Browse structure collections

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