Investigation of RNA structure in satellite panicum mosaic virus. Determined by X-ray diffraction at 4.6 Å resolution. Released 11 Oct 2017.
Explore 5CW0 in 3D Show helices and sheets RCSB PDB PDBe
5CW0 contains 4 α-helices and 10 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 22-29 | 8 | 1 |
| β-strand | 36-40 | 5 | 2 |
| α-helix | 41-43 | 3 | |
| α-helix | 45-50 | 6 | |
| β-strand | 54-66 | 13 | 1 |
| β-strand | 71-76 | 6 | 2 |
| β-strand | 86-87 | 2 | 2 |
| β-strand | 91 | 1 | 2 |
| β-strand | 98-100 | 3 | 1 |
| β-strand | 112-113 | 2 | 1 |
| β-strand | 121-128 | 8 | 2 |
| α-helix | 135-137 | 3 | |
| β-strand | 139-149 | 11 | 1 |
| α-helix | 150-152 | 3 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Coat protein | A | protein | 157 | Satellite panicum mosaic virus | Q86993 (AlphaFold model) |
>5CW0_1 Coat protein (chains A) MAPKRSRRSNRRAGSRAAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAF TIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAE TILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS
Investigation of RNA structure in satellite panicum mosaic virus. Makino, D.L., Day, J., Larson, S.B. et al. Virology (2006) 351:420-431. DOI 10.1016/j.virol.2006.03.028 · PubMed
Other PDB entries of the same protein (UniProt Q86993 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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