5FWT: Wnt modulator Kremen crystal form I

Wnt modulator Kremen crystal form I at 2.10A. Determined by X-ray diffraction at 2.1 Å resolution. Released 20 Jul 2016.

Method: X-ray diffraction
Resolution: 2.1 Å
Organism: HOMO SAPIENS
Chains: 1
Atoms: 2,406
Mol. weight: 45.35 kDa
Ligands: PO4, CA, NAG
Released: 20 Jul 2016

Explore 5FWT in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5FWT contains 7 α-helices and 28 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 7 helices, 28 β-strands

Element	Residues	Length	Sheet
β-strand	46	1	1
β-strand	48	1	2
β-strand	54	1	1
α-helix	55-57	3
α-helix	72-77	6
β-strand	85	1	3
β-strand	94-96	3	3
β-strand	106-108	3	3
β-strand	110	1	2
β-strand	119-124	6	4
β-strand	135-138	4	4
α-helix	144-153	10
β-strand	158-162	5	4
β-strand	166-170	5	4
β-strand	180-181	2	4
α-helix	183-186	4
β-strand	187	1	5
α-helix	188	1
β-strand	189-190	2	6
β-strand	193-197	5	6
β-strand	199	1	5
β-strand	200	1	4
β-strand	203-208	6	4
β-strand	216-218	3	7
β-strand	222-226	5	8
α-helix	233-235	3
β-strand	239-245	7	7
β-strand	251-260	10	8
β-strand	267-272	6	7
β-strand	278-283	6	7
β-strand	286	1	7
α-helix	287-289	3
β-strand	291-294	4	8
β-strand	298-304	7	7
β-strand	313-321	9	8

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Kremen protein 1	A	protein	406	HOMO SAPIENS	Q96MU8 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>5FWT_1 KREMEN PROTEIN 1 (chains A)
MGILPSPGMPALLSLVSLLSVLLMGCVAETGAPSPGLGPGPECFTANGADYRGTQNWTAL
QGGKPCLFWNETFQHPYNTLKYPNGEGGLGEHNYCRNPDGDVSPWCYVAEHEDGVYWKYC
EIPACQMPGNLGCYKDHGNPPPLTGTSKTSNKLTIQTCISFCRSQRFKFAGMESGYACFC
GNNPDYWKYGEAASTECNSVCFGDHTQPCGGDGRIILFDTLVGACGGNYSAMSSVVYSPD
FPDTYATGRVCYWTIRVPGASHIHFSFPLFDIRDSADMVELLDGYTHRVLARFHGRSRPP
LSFNVSLDFVILYFFSDRINQAQGFAVLYQAVKEEGSENLYFQGGSLPQERPAVNQTVAE
VITEQANLSVSAARSSKVLYVITTSPSHPPQTVPGTHHHHHHHHHH

Ligands and cofactors

ID	Name	Formula	Copies
PO4	Phosphate ion	O4 P	1
CA	Calcium ion	Ca	1
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose	C8 H15 N O6	3

Primary citation

Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight Into Ternary Complex Formation with Lrp6 and Dickkopf. Zebisch, M., Jackson, V.A., Zhao, Y. et al. Structure (2016) 24:1599. DOI 10.1016/J.STR.2016.06.020 · PubMed

Other PDB entries of the same protein (UniProt Q96MU8 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5FWS 1.9 Å, Wnt modulator Kremen crystal form I at 1.90A
9VFR 2.55 Å, Structure of mature Coxsackievirus A6 virion complexed with its receptor KREMEN1
5FWU 2.8 Å, Wnt modulator Kremen crystal form II at 2.8A
7BZT 3.0 Å, Cryo-EM structure of mature Coxsackievirus A10 in complex with KRM1 at pH 7.4
7BZU 3.0 Å, Cryo-EM structure of mature Coxsackievirus A10 in complex with KRM1 at pH 5.5
5FWV 3.2 Å, Wnt modulator Kremen crystal form III at 3.2A
5FWW 3.5 Å, Wnt modulator Kremen in complex with DKK1 (CRD2) and LRP6 (PE3PE4)
6SNW 3.9 Å, Structure of Coxsackievirus A10 complexed with its receptor KREMEN1

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