5HJP: Retinoic acid receptor RXR-beta

Identification of LXRbeta selective agonists for the treatment of Alzheimer's Disease. Determined by X-ray diffraction at 2.6 Å resolution. Released 6 Apr 2016.

Method
X-ray diffraction
Resolution
2.6 Å
Organism
Homo sapiens
Chains
4
Atoms
7,679
Mol. weight
117.28 kDa
Ligands
668
Released
6 Apr 2016

Explore 5HJP in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5HJP contains 56 α-helices and 10 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 15 helices, 2 β-strands

ElementResiduesLengthSheet
α-helix301-3099
α-helix337-35620
α-helix365-38723
α-helix388-3903
β-strand394-39631
β-strand402-40431
α-helix405-4106
α-helix414-4207
α-helix421-4255
α-helix426-4305
α-helix435-44612
α-helix457-47822
α-helix485-4906
α-helix492-51322
α-helix517-5193
α-helix520-5267
α-helix542-5465
Chain B: 14 helices, 3 β-strands
ElementResiduesLengthSheet
α-helix222-24423
α-helix246-2483
α-helix250-2523
α-helix262-28827
α-helix292-2943
α-helix297-31721
β-strand320-32122
β-strand326-32942
β-strand333-33532
α-helix337-3426
α-helix347-36317
α-helix367-37812
α-helix389-41022
α-helix417-44428
α-helix451-4577
α-helix463-4653
α-helix470-4767
Chain C: 13 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix301-31010
α-helix337-35620
α-helix365-38723
β-strand394-39633
β-strand402-40433
α-helix405-4106
α-helix414-4207
α-helix421-4255
α-helix426-4305
α-helix435-44612
α-helix457-47822
α-helix485-4906
α-helix493-51321
α-helix520-5278
α-helix542-5476
Chain D: 14 helices, 3 β-strands
ElementResiduesLengthSheet
α-helix222-24322
α-helix250-2523
α-helix263-28725
α-helix292-2943
α-helix297-31721
β-strand320-32124
β-strand326-32944
β-strand333-33534
α-helix337-3426
α-helix347-36317
α-helix367-37812
α-helix389-41022
α-helix417-44428
α-helix447-4504
α-helix451-4577
α-helix463-4653
α-helix470-4756

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Retinoic acid receptor RXR-betaA, Cprotein254Homo sapiensP28702 (AlphaFold model)
Oxysterols receptor LXR-betaB, Dprotein264Homo sapiensP55055 (AlphaFold model)
Sequence of entity 1 (A, C), FASTA
>5HJP_1 Retinoic acid receptor RXR-beta (chains A, C)
MPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQK
YPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLAGSGSG
SHKILHRLLQDSSS
Sequence of entity 2 (B, D), FASTA
>5HJP_2 Oxysterols receptor LXR-beta (chains B, D)
GVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPASGSASQQRFAHFTELAI
ISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYS
KDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQ
QPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEI
WDVHEGSGSGSHKILHRLLQDSSS

Ligands and cofactors

IDNameFormulaCopies
6682-chloro-4-{1'-[(2R)-2-hydroxy-3-methyl-2-(trifluoromethyl)butanoyl]-4,4'-bipip…C25 H35 Cl F3 N3 O32

Water and common crystallization additives (PEG) are not listed.

Primary citation

Identification and in Vivo Evaluation of Liver X Receptor beta-Selective Agonists for the Potential Treatment of Alzheimer's Disease. Stachel, S.J., Zerbinatti, C., Rudd, M.T. et al. J Med Chem (2016) 59:3489-3498. DOI 10.1021/acs.jmedchem.6b00176 · PubMed

Other PDB entries of the same protein (UniProt P28702 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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