5IC8: UTP6

Structure of UTP6. Determined by X-ray diffraction at 3.3 Å resolution. Released 6 Jul 2016.

Method
X-ray diffraction
Resolution
3.3 Å
Organism
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Chains
4
Atoms
8,581
Mol. weight
149.27 kDa
Released
6 Jul 2016

Explore 5IC8 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5IC8 contains 70 α-helices and 4 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 19 helices, 2 β-strands

ElementResiduesLengthSheet
α-helix87-10216
α-helix107-11913
α-helix123-13614
α-helix141-15313
α-helix157-17014
α-helix176-19520
α-helix241-2433
β-strand24711
β-strand25311
α-helix2561
α-helix2581
α-helix262-2709
α-helix273-2753
α-helix277-28610
α-helix294-30411
α-helix313-32715
α-helix332-3409
α-helix341-3433
α-helix352-36918
α-helix374-38916
α-helix396-40813
Chain B: 18 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix87-10216
α-helix107-11913
α-helix123-13614
α-helix141-15313
α-helix157-17014
α-helix176-19520
α-helix241-2433
β-strand24712
β-strand25312
α-helix2561
α-helix2581
α-helix262-2709
α-helix277-28610
α-helix294-30512
α-helix312-32716
α-helix332-3409
α-helix341-3433
α-helix352-36918
α-helix374-38916
α-helix396-40813
Chain C: 16 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix87-10216
α-helix107-11913
α-helix123-13614
α-helix141-15313
α-helix157-17014
α-helix176-19318
α-helix241-2433
α-helix256-2583
α-helix262-2698
α-helix277-28610
α-helix294-30512
α-helix313-32715
α-helix333-34412
α-helix353-36816
α-helix378-39013
α-helix397-40812
Chain D: 17 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix87-10216
α-helix107-11913
α-helix123-13614
α-helix141-15313
α-helix157-17014
α-helix176-19318
α-helix241-2433
α-helix256-2583
α-helix262-2698
α-helix277-28610
α-helix294-30512
α-helix312-32716
α-helix332-3409
α-helix354-36714
α-helix3711
α-helix374-39017
α-helix396-40813

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Putative uncharacterized proteinA, B, C, Dprotein334Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)G0S387 (AlphaFold model)
Sequence of entity 1 (A, B, C, D), FASTA
>5IC8_1 Putative uncharacterized protein (chains A, B, C, D)
RSVTSHASQARTFGIFERAVLKHPGSIELWLAYLEFAAQVKATKRWRRIMTRALRLHPMN
ASLWTLAGRRAAQNGDMQRARAHFLRGCRFCTREPTLWLEYARCEMDWLARMEAKKQGQG
VRKGVNALEAIKATEGQEEGDIIPIGEDTEDDSGDEDGLILPDPDAEGTDGTKKAAKPVF
DAEQTKKLEQSPALSGAIPIAVFDVARKQPFWGPAAAEKFFDVFAKFGHLSCHERIISHV
VTTMQELFPNHPCTWSVHIRQPLVGVDVLTPAFPKALRESLARLKAALQSTTDRKALATK
MVAWMDGILAIEKLDAAIRTVLEHTKRSLEESPS

Primary citation

Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits. Zhang, C., Sun, Q., Chen, R. et al. Nucleic Acids Res (2016) 44:7475-7486. DOI 10.1093/nar/gkw562 · PubMed

Other PDB entries of the same protein (UniProt G0S387 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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