6OKW: VEK50

Solution structure of VEK50. Determined by solution NMR. Released 26 Feb 2020.

Method: Solution NMR
Organism: Streptococcus pyogenes
Chains: 1
Atoms: 433
Mol. weight: 6.17 kDa
Released: 26 Feb 2020

Explore 6OKW in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6OKW contains 4 α-helices and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 4 helices, 0 β-strands

Element	Residues	Length
α-helix	8-16	9
α-helix	18-20	3
α-helix	21-30	10
α-helix	35-47	13

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Plasminogen-binding group A streptococcal M-like protein PAM	A	protein	52	Streptococcus pyogenes	P49054 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>6OKW_1 Plasminogen-binding group A streptococcal M-like protein PAM (chains A)
GSVEKLTADAELQRLKNERHEEAELERLKSERHDHDKKEAERKALEDKLADY

Primary citation

Solution structural model of the complex of the binding regions of human plasminogen with its M-protein receptor from Streptococcus pyogenes. Yuan, Y., Ayinuola, Y.A., Singh, D. et al. J Struct Biol (2019) 208:18-29. DOI 10.1016/j.jsb.2019.07.005 · PubMed

Other PDB entries of the same protein (UniProt P49054 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6OG4 1.7 Å, plasminogen binding group A streptococcal M protein
2DOH 2.3 Å, The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound a…
1I5K 2.7 Å, Structure and binding determinants of the recombinant kringle-2 domain of human…
2DOI 3.1 Å, The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound…
8TVL 3.8 Å, Plasminogen binding group A streptococcus M-like protein from AP53 bound to human…
6OKX Solution structure of VEK50RH1/AA
6OKY Solution structure of truncated peptide from PAMap53
6OQ9 Solution structure of VEK50 in the bound form with plasminogen kringle 2
6OQJ Solution structure of the complex of mutant VEK50[RH1/AA] and plasminogen kringle 2
6OQK Solution structure of the complex of mutant VEK50[RH2/AA] and plasminogen kringle 2

Browse structure collections

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