6OKX: VEK50RH1/AA

Solution structure of VEK50RH1/AA. Determined by solution NMR. Released 26 Feb 2020.

Method: Solution NMR
Organism: Streptococcus pyogenes
Chains: 1
Atoms: 422
Mol. weight: 6.02 kDa
Released: 26 Feb 2020

Explore 6OKX in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6OKX contains 4 α-helices and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 4 helices, 0 β-strands

Element	Residues	Length
α-helix	4-16	13
α-helix	19-29	11
α-helix	33-43	11
α-helix	44-46	3

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Plasminogen-binding group A streptococcal M-like protein PAM	A	protein	52	Streptococcus pyogenes	P49054 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>6OKX_1 Plasminogen-binding group A streptococcal M-like protein PAM (chains A)
GSVEKLTADAELQRLKNEAAEEAELERLKSERHDHDKKEAERKALEDKLADY

Primary citation

Solution structural model of the complex of the binding regions of human plasminogen with its M-protein receptor from Streptococcus pyogenes. Yuan, Y., Ayinuola, Y.A., Singh, D. et al. J Struct Biol (2019) 208:18-29. DOI 10.1016/j.jsb.2019.07.005 · PubMed

Other PDB entries of the same protein (UniProt P49054 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6OG4 1.7 Å, plasminogen binding group A streptococcal M protein
2DOH 2.3 Å, The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound a…
1I5K 2.7 Å, Structure and binding determinants of the recombinant kringle-2 domain of human…
2DOI 3.1 Å, The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound…
8TVL 3.8 Å, Plasminogen binding group A streptococcus M-like protein from AP53 bound to human…
6OKW Solution structure of VEK50
6OKY Solution structure of truncated peptide from PAMap53
6OQ9 Solution structure of VEK50 in the bound form with plasminogen kringle 2
6OQJ Solution structure of the complex of mutant VEK50[RH1/AA] and plasminogen kringle 2
6OQK Solution structure of the complex of mutant VEK50[RH2/AA] and plasminogen kringle 2

Browse structure collections

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