6ZNL: Dynactin complex
Cryo-EM structure of the dynactin complex. Determined by electron microscopy at 3.8 Å resolution. Released 29 Jul 2020.
- Method
- Electron microscopy
- Resolution
- 3.8 Å
- Organism
- Sus scrofa
- Chains
- 23
- Atoms
- 52,864
- Mol. weight
- 1097.75 kDa
- Ligands
- ADP, ATP, ZN
- Released
- 29 Jul 2020
Explore 6ZNL in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6ZNL contains 350 α-helices and 329 β-strands across 23 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 23 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-15 | 4 | 1 |
| β-strand | 20-25 | 6 | 1 |
| β-strand | 33-36 | 4 | 1 |
| β-strand | 39-42 | 4 | 2 |
| β-strand | 45-46 | 2 | 3 |
| α-helix | 51-53 | 3 | |
| β-strand | 57-58 | 2 | 2 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 2 |
| β-strand | 75-76 | 2 | 4 |
| β-strand | 79-80 | 2 | 4 |
| α-helix | 83-94 | 12 | |
| β-strand | 108-111 | 4 | 1 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 1 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 5 |
| β-strand | 165-171 | 7 | 5 |
| β-strand | 174-175 | 2 | 5 |
| β-strand | 181-183 | 3 | 5 |
| α-helix | 187-201 | 15 | |
| α-helix | 210-220 | 11 | |
| β-strand | 223 | 1 | 6 |
| α-helix | 228-233 | 6 | |
| α-helix | 235-237 | 3 | |
| β-strand | 240-242 | 3 | 7 |
| β-strand | 248-250 | 3 | 7 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 275-285 | 11 | |
| α-helix | 288-290 | 3 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 5 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 6 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 330-331 | 2 | 5 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 1 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-374 | 7 | |
Chain B: 21 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 11 | 1 | |
| β-strand | 12-15 | 4 | 8 |
| β-strand | 20-25 | 6 | 8 |
| β-strand | 33-36 | 4 | 8 |
| β-strand | 39-42 | 4 | 9 |
| β-strand | 45-46 | 2 | 10 |
| β-strand | 57-58 | 2 | 9 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 9 |
| β-strand | 75-76 | 2 | 11 |
| β-strand | 79-80 | 2 | 11 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-112 | 5 | 8 |
| α-helix | 113 | 1 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-141 | 6 | 8 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 12 |
| β-strand | 165-171 | 7 | 12 |
| β-strand | 174-175 | 2 | 12 |
| β-strand | 181-183 | 3 | 12 |
| α-helix | 187-201 | 15 | |
| α-helix | 208-220 | 13 | |
| β-strand | 223 | 1 | 13 |
| α-helix | 228-233 | 6 | |
| β-strand | 240-242 | 3 | 14 |
| β-strand | 248-250 | 3 | 14 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 265-267 | 3 | |
| α-helix | 275-285 | 11 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 12 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 13 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 328-331 | 4 | 12 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 8 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-373 | 6 | |
Chain C: 21 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-15 | 4 | 15 |
| β-strand | 20-25 | 6 | 15 |
| β-strand | 33-36 | 4 | 15 |
| β-strand | 39-42 | 4 | 16 |
| β-strand | 45-46 | 2 | 17 |
| β-strand | 57-58 | 2 | 16 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 16 |
| β-strand | 75-76 | 2 | 18 |
| β-strand | 79-80 | 2 | 18 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-111 | 4 | 15 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 15 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 3 |
| β-strand | 165-171 | 7 | 3 |
| β-strand | 174-175 | 2 | 3 |
| β-strand | 181-183 | 3 | 3 |
| α-helix | 187-201 | 15 | |
| α-helix | 208-220 | 13 | |
| β-strand | 223 | 1 | 19 |
| α-helix | 228-233 | 6 | |
| β-strand | 240-242 | 3 | 20 |
| β-strand | 248-250 | 3 | 20 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 265-267 | 3 | |
| α-helix | 275-285 | 11 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 3 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 19 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 330-332 | 3 | 3 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 15 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-372 | 5 | |
Chain D: 21 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-15 | 4 | 21 |
| β-strand | 20-25 | 6 | 21 |
| β-strand | 33-36 | 4 | 21 |
| β-strand | 39-42 | 4 | 22 |
| β-strand | 45-46 | 2 | 23 |
| β-strand | 57-58 | 2 | 22 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 22 |
| β-strand | 75-76 | 2 | 24 |
| β-strand | 79-80 | 2 | 24 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-111 | 4 | 21 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 21 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 10 |
| β-strand | 165-171 | 7 | 10 |
| β-strand | 174-175 | 2 | 10 |
| β-strand | 181-183 | 3 | 10 |
| α-helix | 187-201 | 15 | |
| α-helix | 208-220 | 13 | |
| β-strand | 223 | 1 | 25 |
| α-helix | 228-234 | 7 | |
| β-strand | 240-242 | 3 | 26 |
| β-strand | 248-250 | 3 | 26 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 265-267 | 3 | |
| α-helix | 275-285 | 11 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 10 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 25 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 329-331 | 3 | 10 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 21 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-373 | 6 | |
Chain E: 21 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-11 | 3 | |
| β-strand | 12-15 | 4 | 27 |
| β-strand | 20-25 | 6 | 27 |
| β-strand | 33-36 | 4 | 27 |
| β-strand | 39-42 | 4 | 28 |
| β-strand | 45-46 | 2 | 29 |
| β-strand | 57-58 | 2 | 28 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 28 |
| β-strand | 75-76 | 2 | 30 |
| β-strand | 79-80 | 2 | 30 |
| α-helix | 83-93 | 11 | |
| β-strand | 108-111 | 4 | 27 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 27 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 17 |
| β-strand | 165-171 | 7 | 17 |
| β-strand | 174-175 | 2 | 17 |
| β-strand | 181-183 | 3 | 17 |
| α-helix | 187-201 | 15 | |
| α-helix | 208-220 | 13 | |
| β-strand | 223 | 1 | 31 |
| α-helix | 228-233 | 6 | |
| β-strand | 240-242 | 3 | 32 |
| β-strand | 248-250 | 3 | 32 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 265-267 | 3 | |
| α-helix | 275-285 | 11 | |
| α-helix | 290-296 | 7 | |
| β-strand | 298-301 | 4 | 17 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 31 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 329-331 | 3 | 17 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 27 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-373 | 6 | |
Chain F: 24 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-11 | 3 | |
| β-strand | 12-15 | 4 | 33 |
| β-strand | 20-25 | 6 | 33 |
| β-strand | 33-36 | 4 | 33 |
| β-strand | 39-42 | 4 | 34 |
| β-strand | 45 | 1 | 35 |
| α-helix | 46 | 1 | |
| α-helix | 52-53 | 2 | |
| β-strand | 57-58 | 2 | 34 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-72 | 4 | 34 |
| β-strand | 75-76 | 2 | 36 |
| β-strand | 79-80 | 2 | 36 |
| α-helix | 83-94 | 12 | |
| β-strand | 108-111 | 4 | 33 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 33 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 23 |
| β-strand | 165-171 | 7 | 23 |
| β-strand | 174-175 | 2 | 23 |
| β-strand | 181-183 | 3 | 23 |
| α-helix | 187-201 | 15 | |
| α-helix | 210-220 | 11 | |
| β-strand | 223 | 1 | 37 |
| α-helix | 228-233 | 6 | |
| α-helix | 235-237 | 3 | |
| β-strand | 240-242 | 3 | 38 |
| β-strand | 248-250 | 3 | 38 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 275-285 | 11 | |
| α-helix | 288-290 | 3 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 23 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 37 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 329-331 | 3 | 23 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 33 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-374 | 7 | |
Chain G: 26 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-11 | 2 | |
| β-strand | 12-15 | 4 | 39 |
| β-strand | 20-25 | 6 | 39 |
| β-strand | 33-36 | 4 | 39 |
| β-strand | 39-40 | 2 | 40 |
| β-strand | 41-42 | 2 | 41 |
| β-strand | 45 | 1 | 42 |
| α-helix | 46 | 1 | |
| α-helix | 52-53 | 2 | |
| β-strand | 57-58 | 2 | 40 |
| α-helix | 60-64 | 5 | |
| β-strand | 69-70 | 2 | 41 |
| α-helix | 71 | 1 | |
| β-strand | 75-76 | 2 | 43 |
| β-strand | 79-80 | 2 | 43 |
| α-helix | 83-94 | 12 | |
| β-strand | 108-111 | 4 | 39 |
| α-helix | 112-113 | 2 | |
| α-helix | 118-130 | 13 | |
| β-strand | 136-140 | 5 | 39 |
| α-helix | 142-150 | 9 | |
| β-strand | 155-160 | 6 | 29 |
| β-strand | 165-171 | 7 | 29 |
| β-strand | 174-175 | 2 | 29 |
| α-helix | 177-179 | 3 | |
| β-strand | 181-183 | 3 | 29 |
| α-helix | 187-201 | 15 | |
| α-helix | 210-220 | 11 | |
| β-strand | 223 | 1 | 44 |
| α-helix | 228-233 | 6 | |
| α-helix | 235-237 | 3 | |
| β-strand | 240-242 | 3 | 45 |
| β-strand | 248-250 | 3 | 45 |
| α-helix | 254-257 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 275-285 | 11 | |
| α-helix | 288-290 | 3 | |
| α-helix | 291-296 | 6 | |
| β-strand | 298-301 | 4 | 29 |
| α-helix | 303-305 | 3 | |
| β-strand | 308 | 1 | 44 |
| α-helix | 310-321 | 12 | |
| α-helix | 323 | 1 | |
| β-strand | 330-333 | 4 | 29 |
| α-helix | 339-349 | 11 | |
| α-helix | 353-356 | 4 | |
| β-strand | 358-359 | 2 | 39 |
| α-helix | 360-366 | 7 | |
| α-helix | 368-374 | 7 | |
Chain H: 22 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-12 | 5 | 46 |
| β-strand | 16-21 | 6 | 46 |
| β-strand | 29-32 | 4 | 46 |
| β-strand | 35-38 | 4 | 47 |
| α-helix | 44-45 | 2 | |
| β-strand | 53-54 | 2 | 47 |
| α-helix | 56-60 | 5 | |
| β-strand | 65-68 | 4 | 47 |
| β-strand | 71-72 | 2 | 48 |
| β-strand | 75-76 | 2 | 48 |
| α-helix | 79-87 | 9 | |
| α-helix | 88-94 | 7 | |
| β-strand | 103-107 | 5 | 46 |
| α-helix | 113-125 | 13 | |
| β-strand | 131-136 | 6 | 46 |
| α-helix | 137-143 | 7 | |
| β-strand | 150-155 | 6 | 35 |
| β-strand | 160-166 | 7 | 35 |
| β-strand | 169-170 | 2 | 35 |
| α-helix | 172-174 | 3 | |
| β-strand | 176-178 | 3 | 35 |
| α-helix | 182-196 | 15 | |
| α-helix | 203-216 | 14 | |
| α-helix | 223-232 | 10 | |
| β-strand | 239-241 | 3 | 49 |
| β-strand | 247-249 | 3 | 49 |
| α-helix | 253-256 | 4 | |
| α-helix | 259-262 | 4 | |
| α-helix | 264-266 | 3 | |
| α-helix | 274-284 | 11 | |
| α-helix | 290-295 | 6 | |
| β-strand | 297-298 | 2 | 35 |
| α-helix | 302-304 | 3 | |
| α-helix | 309-320 | 12 | |
| β-strand | 329-330 | 2 | 35 |
| α-helix | 338-348 | 11 | |
| α-helix | 350-354 | 5 | |
| α-helix | 356 | 1 | |
| β-strand | 357-358 | 2 | 46 |
| α-helix | 359-365 | 7 | |
| α-helix | 369-372 | 4 | |
15 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| ARP1 actin related protein 1 homolog A | A, B, C, D, E, F, G, I | protein | 376 | Sus scrofa | F2Z5G5 (AlphaFold model) |
| Actin, cytoplasmic 1 | H | protein | 375 | Sus scrofa | Q6QAQ1 (AlphaFold model) |
| Arp11 | J | protein | 417 | Sus scrofa | I3LHK5 (AlphaFold model) |
| Capping protein (Actin filament) muscle Z-line, alpha 1 | K | protein | 286 | Sus scrofa | A0PFK5 (AlphaFold model) |
| F-actin capping protein beta subunit | L | protein | 272 | Sus scrofa | A0PFK7 |
| Dynactin subunit 2 | M, N, m, n | protein | 405 | Sus scrofa | A0A5G2QD80 |
| Dynactin subunit 3 | O, o | protein | 186 | Sus scrofa | F1SEC0 |
| Dynactin 6 | U | protein | 190 | Sus scrofa | D0G6S1 |
| Dynactin subunit 5 | V | protein | 182 | Sus scrofa | A0A286ZK88 |
| Dynactin subunit 4 | Y | protein | 467 | Sus scrofa | A0A4X1TB62 |
| Dynactin subunit 1 | Z, z | protein | 1286 | Sus scrofa | A0A287B8J2 |
Sequence of entity 1 (A, B, C, D, E, F, G, I), FASTA
>6ZNL_1 ARP1 actin related protein 1 homolog A (chains A, B, C, D, E, F, G, I)
MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP
KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN
RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ
YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL
SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK
KEYEEDGARSIHRKTF
Sequence of entity 2 (H), FASTA
>6ZNL_2 Actin, cytoplasmic 1 (chains H)
MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
EYDESGPSIVHRKCF
Sequence of entity 3 (J), FASTA
>6ZNL_3 Arp11 (chains J)
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP
SPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPIDTRKQLA
ENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKTFRIHTPPAKANCVAWLGGAI
FGALQDILGSRSVSKEYYNQTGRIPDWCSLNNPPLEMVFDVGKSQPPLMKRAFSTEK
Sequence of entity 4 (K), FASTA
>6ZNL_4 Capping protein (Actin filament) muscle Z-line, alpha 1 (chains K)
MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD
QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSW
RESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT
ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQ
TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA
Sequence of entity 5 (L), FASTA
>6ZNL_5 F-actin capping protein beta subunit (chains L)
MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL
LCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVY
LWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTN
KSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIV
NGLRSVQTFADKSKQEALKNDLVEALKRKQQC
Sequence of entity 6 (M, N, m, n), FASTA
>6ZNL_6 Dynactin subunit 2 (chains M, N, m, n)
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK
DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
KIKMTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL
LQLEATKNTKGAGSGGKTTSGSPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA
TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH
KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT
QQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK
Sequence of entity 7 (O, o), FASTA
>6ZNL_7 Dynactin subunit 3 (chains O, o)
MAGVTDVQRLQARLEELERWVYGPGGSRGSRKVADGLVKVQVALGNIASKRERVKILYKK
IEDLIKYLDPEYMDRIAIPDASKLQFILAEEQFILSQVALLEQVEALVPMLDSAHIKAVP
EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAAKQ
VKPAEE
Sequence of entity 8 (U), FASTA
>6ZNL_8 Dynactin 6 (chains U)
MAEKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQA
LIINAHPDNITPDAEDSEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILT
SGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKT
MKGSSTPVKN
Sequence of entity 9 (V), FASTA
>6ZNL_9 Dynactin subunit 5 (chains V)
MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH
CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC
VLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLT
QV
Sequence of entity 10 (Y), FASTA
>6ZNL_10 Dynactin subunit 4 (chains Y)
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD
VGMADKSVASGGWQEPDHPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ
HTIHVVDKYGLGTRLQRPRAGTTITALAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
TRPVNLTEVTTLQQRLLQPDFQPICASQLYPRHKHLLIKRSLRCRQCEHNLSKPEFNPTS
IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLLECEEGDPDDTN
STAKVSVPPTELVLAGKDAAAEYDELAEPQDFPDDPDVVAFRKANKVGVFIKVTPQREEG
DVTVCFKLKHDFKNLAAPIRPVEEADPGAEVSWLTQHVELSLGPLLP
Sequence of entity 11 (Z, z), FASTA
>6ZNL_11 Dynactin subunit 1 (chains Z, z)
MAQSKRHVYSRTPSGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV
ILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSPETPDSSASKVLRRE
GTDSNAKTSKLRGPKPKKAPTARKTTTRRPKPTRPASTGVAGASSSLGPSGSASAGELSS
SEPSTPAQTPLAAPIIPTPALTSPGAAPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAE
DKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADT
ADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQL
KQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAE
STIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENARE
TELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQEA
SVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDSFLRPG
GDHDCVLVLLLMPRLICKAELIRKQAQEKFDLSENCSERPGLRGAAGEQLSFAAGLVYSL
SLLQATLHRYEHALSQCSVDVYKKVGSLYPEMSAHERSLDFLIELLHKDQLDETVNVEPL
TKAIKYYQHLYSIHLAEQPEDSTMQLADHIKFTQSALDCMSVEVGRLRAFLQGGQEASDI
ALLLRDLETSCSDIRQFCKKIRRRMPGTDAPGIPAALAFGAQVSDTLLDCRKHLTWVVAV
LQEVAAAAAQLIAPLAENEGLPVAALEELAFKASEQVGWDGWAEGSAGGVRWPVWDFHHC
XKLLLVVGGLGGKRREFGEHHPAEKPPPVELRAAALRAEITDAEGLGLKLEDRETVIKEL
KKSLKIKGEELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEET
MDALQADIDQLEAEKAELKQRLNSQSKRTIEGIRGPPPSGIATLVSGIAGEEQQRGGAPG
QAPGIVPGPGLVKDSPLLLQQISAMRLHISQLQHENSVLKGAQMKASLAALPPLHVAKLS
LPPHEGPGSELAAGALYRKTNQLLETLNQLSTHTHVVDITRSSPAAKSPSAQLLEQVTQL
KSLSDTIEKLKDEVLKETVSQRPGATVPTDFATFPSSAFLRAKEEQQDDTVYMGKVTFSC
AAGLGQRHRLVLTQEQLHQLHDRLIS
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 9 |
| ATP | Adenosine-5'-triphosphate | C10 H16 N5 O13 P3 | 1 |
| ZN | Zinc ion | Zn | 3 |
Primary citation
Cryo-EM reveals the complex architecture of dynactin's shoulder region and pointed end. Lau, C.K., O'Reilly, F.J., Santhanam, B. et al. EMBO J (2021) 40:e106164-e106164. DOI 10.15252/embj.2020106164 · PubMed
Other PDB entries of the same protein (UniProt F2Z5G5 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7Z8I 3.3 Å, The barbed end complex of dynactin bound to BICDR1 and the cytoplasmic dynein tails (A2,…
- 6F1U 3.4 Å, N terminal region of dynein tail domains in complex with dynactin filament and BICDR-1
- 6F1T 3.5 Å, Cryo-EM structure of two dynein tail domains bound to dynactin and BICDR1
- 5ADX 4.0 Å, CryoEM structure of dynactin complex at 4.0 angstrom resolution
- 6ZNM 4.1 Å, The pointed end complex of dynactin bound to BICDR1
- 7Z8K 4.37 Å, Cytoplasmic dynein (A1) bound to BICDR1
- 6ZNN 4.5 Å, The pointed end complex of dynactin bound to Hook3
- 9HHL 6.53 Å, Structure of Dynein-Dynactin-NuMA-LIS1
- 6F38 6.7 Å, Cryo-EM structure of two dynein tail domains bound to dynactin and HOOK3
- 6ZNO 6.8 Å, The pointed end complex of dynactin with the p150 projection docked
- 5AFU 8.2 Å, Cryo-EM structure of dynein tail-dynactin-BICD2N complex
- 6F3A 8.2 Å, Cryo-EM structure of a single dynein tail domain bound to dynactin and BICD2N
Browse structure collections
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