7B7U: Mammalian RNA polymerase II
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Determined by electron microscopy at 2.8 Å resolution. Released 19 May 2021.
- Method
- Electron microscopy
- Resolution
- 2.8 Å
- Organisms
- Sus scrofa domesticus, Homo sapiens
- Chains
- 12
- Atoms
- 25,091
- Mol. weight
- 553.88 kDa
- Ligands
- ZN
- Released
- 19 May 2021
Explore 7B7U in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7B7U contains 137 α-helices and 163 β-strands across 12 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 45 helices, 46 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 365 | 1 | 1 |
| β-strand | 367-369 | 3 | 2 |
| β-strand | 377-381 | 5 | 2 |
| α-helix | 382-387 | 6 | |
| β-strand | 389-393 | 5 | 3 |
| α-helix | 399-408 | 10 | |
| β-strand | 416-420 | 5 | 3 |
| β-strand | 426-428 | 3 | 3 |
| β-strand | 445-449 | 5 | 3 |
| β-strand | 455-457 | 3 | 2 |
| β-strand | 471-477 | 7 | 2 |
| β-strand | 482-484 | 3 | 2 |
| β-strand | 501 | 1 | 1 |
| β-strand | 504 | 1 | 2 |
| α-helix | 509-518 | 10 | |
| α-helix | 542-548 | 7 | |
| α-helix | 557-565 | 9 | |
| α-helix | 573-577 | 5 | |
| β-strand | 579-581 | 3 | 4 |
| β-strand | 585 | 1 | 4 |
| α-helix | 588-595 | 8 | |
| β-strand | 602-604 | 3 | 5 |
| α-helix | 612-615 | 4 | |
| β-strand | 628-630 | 3 | 5 |
| β-strand | 635-637 | 3 | 5 |
| α-helix | 642-645 | 4 | |
| α-helix | 652-660 | 9 | |
| α-helix | 662-683 | 22 | |
| β-strand | 686 | 1 | 6 |
| α-helix | 689-692 | 4 | |
| α-helix | 696-722 | 27 | |
| α-helix | 726-728 | 3 | |
| α-helix | 733-759 | 27 | |
| α-helix | 765-772 | 8 | |
| α-helix | 778-785 | 8 | |
| β-strand | 789-790 | 2 | 7 |
| β-strand | 793 | 1 | 8 |
| β-strand | 796 | 1 | 8 |
| β-strand | 802 | 1 | 9 |
| β-strand | 805 | 1 | 9 |
| β-strand | 822-823 | 2 | 7 |
| α-helix | 833-867 | 35 | |
| β-strand | 872-873 | 2 | 10 |
| β-strand | 879-880 | 2 | 10 |
| β-strand | 886-888 | 3 | 10 |
| α-helix | 891-893 | 3 | |
| β-strand | 896 | 1 | 11 |
| β-strand | 902-905 | 4 | 12 |
| α-helix | 913-919 | 7 | |
| α-helix | 929-933 | 5 | |
| β-strand | 934 | 1 | 13 |
| α-helix | 936-944 | 9 | |
| α-helix | 946-969 | 24 | |
| α-helix | 971-973 | 3 | |
| β-strand | 976-979 | 4 | 12 |
| α-helix | 983-993 | 11 | |
| β-strand | 1002 | 1 | 13 |
| α-helix | 1006-1019 | 14 | |
| α-helix | 1028-1048 | 21 | |
| α-helix | 1051-1053 | 3 | |
| α-helix | 1054-1058 | 5 | |
| α-helix | 1062-1079 | 18 | |
| β-strand | 1080 | 1 | 11 |
| α-helix | 1087-1096 | 10 | |
| α-helix | 1097-1101 | 5 | |
| α-helix | 1121-1128 | 8 | |
| β-strand | 1140-1141 | 2 | 14 |
| α-helix | 1146-1149 | 4 | |
| α-helix | 1151-1159 | 9 | |
| β-strand | 1164 | 1 | 15 |
| β-strand | 1170-1177 | 8 | 16 |
| α-helix | 1187-1189 | 3 | |
| α-helix | 1190-1197 | 8 | |
| α-helix | 1204-1206 | 3 | |
| β-strand | 1207 | 1 | 17 |
| β-strand | 1210-1216 | 7 | 16 |
| α-helix | 1218-1223 | 6 | |
| α-helix | 1228-1239 | 12 | |
| β-strand | 1245-1247 | 3 | 16 |
| β-strand | 1256-1259 | 4 | 16 |
| β-strand | 1262 | 1 | 17 |
| α-helix | 1281-1292 | 12 | |
| β-strand | 1299 | 1 | 15 |
| β-strand | 1306-1310 | 5 | 14 |
| β-strand | 1319-1322 | 4 | 18 |
| β-strand | 1328-1331 | 4 | 18 |
| β-strand | 1335-1339 | 5 | 14 |
| α-helix | 1343-1348 | 6 | |
| α-helix | 1362-1368 | 7 | |
| α-helix | 1371-1387 | 17 | |
| α-helix | 1395-1404 | 10 | |
Chain B: 47 helices, 59 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 22-36 | 15 | |
| α-helix | 41-49 | 9 | |
| α-helix | 50-54 | 5 | |
| α-helix | 56-58 | 3 | |
| α-helix | 63-64 | 2 | |
| β-strand | 65-67 | 3 | 19 |
| β-strand | 83-93 | 11 | 19 |
| β-strand | 97-99 | 3 | 20 |
| β-strand | 105-107 | 3 | 20 |
| α-helix | 110-115 | 6 | |
| β-strand | 121-133 | 13 | 19 |
| β-strand | 139-153 | 15 | 19 |
| α-helix | 168-171 | 4 | |
| β-strand | 185-187 | 3 | 21 |
| β-strand | 190-193 | 4 | 21 |
| α-helix | 194-195 | 2 | |
| β-strand | 196-200 | 5 | 22 |
| α-helix | 201 | 1 | |
| β-strand | 204-208 | 5 | 23 |
| β-strand | 215-222 | 8 | 23 |
| β-strand | 234-240 | 7 | 23 |
| β-strand | 256-259 | 4 | 23 |
| β-strand | 267-268 | 2 | 23 |
| α-helix | 269-276 | 8 | |
| α-helix | 281-288 | 8 | |
| α-helix | 295-306 | 12 | |
| α-helix | 314-322 | 9 | |
| α-helix | 332-341 | 10 | |
| α-helix | 342-346 | 5 | |
| α-helix | 358-376 | 19 | |
| α-helix | 381-384 | 4 | |
| α-helix | 388-390 | 3 | |
| β-strand | 391-394 | 4 | 22 |
| α-helix | 396-422 | 27 | |
| α-helix | 431-434 | 4 | |
| α-helix | 437-449 | 13 | |
| β-strand | 468-469 | 2 | 21 |
| α-helix | 470 | 1 | |
| α-helix | 475-482 | 8 | |
| β-strand | 485-486 | 2 | 22 |
| α-helix | 501-502 | 2 | |
| α-helix | 503-505 | 3 | |
| β-strand | 509 | 1 | 24 |
| β-strand | 523-524 | 2 | 22 |
| β-strand | 526 | 1 | 24 |
| β-strand | 531-532 | 2 | 25 |
| α-helix | 539-547 | 9 | |
| β-strand | 552 | 1 | 26 |
| α-helix | 553-555 | 3 | |
| α-helix | 560-563 | 4 | |
| β-strand | 565-569 | 5 | 26 |
| β-strand | 572-577 | 6 | 26 |
| α-helix | 580-593 | 14 | |
| β-strand | 602-606 | 5 | 26 |
| β-strand | 611-615 | 5 | 26 |
| β-strand | 621-627 | 7 | 25 |
| β-strand | 628 | 1 | 27 |
| β-strand | 633 | 1 | 27 |
| α-helix | 637-644 | 8 | |
| α-helix | 653-658 | 6 | |
| β-strand | 662-666 | 5 | 25 |
| α-helix | 667-670 | 4 | |
| β-strand | 675-676 | 2 | 25 |
| β-strand | 695-696 | 2 | 25 |
| α-helix | 700-703 | 4 | |
| α-helix | 708-710 | 3 | |
| α-helix | 714-716 | 3 | |
| α-helix | 719-730 | 12 | |
| β-strand | 732 | 1 | 28 |
| β-strand | 748-751 | 4 | 29 |
| β-strand | 755 | 1 | 30 |
| β-strand | 759-760 | 2 | 31 |
| α-helix | 763-766 | 4 | |
| β-strand | 776-782 | 7 | 32 |
| β-strand | 783 | 1 | 6 |
| β-strand | 794-797 | 4 | 32 |
| α-helix | 798-803 | 6 | |
| β-strand | 808-817 | 10 | 29 |
| β-strand | 828-829 | 2 | 33 |
| β-strand | 853 | 1 | 34 |
| α-helix | 854-855 | 2 | |
| β-strand | 859-860 | 2 | 29 |
| β-strand | 867 | 1 | 34 |
| β-strand | 869-871 | 3 | 33 |
| β-strand | 890-891 | 2 | 33 |
| β-strand | 894 | 1 | 34 |
| β-strand | 902-911 | 10 | 29 |
| β-strand | 917-927 | 11 | 29 |
| β-strand | 934-937 | 4 | 32 |
| β-strand | 943-949 | 7 | 32 |
| β-strand | 956-957 | 2 | 35 |
| β-strand | 965-967 | 3 | 32 |
| α-helix | 969-971 | 3 | |
| α-helix | 978-993 | 16 | |
| α-helix | 996 | 1 | |
| β-strand | 997-998 | 2 | 31 |
| α-helix | 1008-1016 | 9 | |
| β-strand | 1025-1026 | 2 | 32 |
| β-strand | 1028-1029 | 2 | 35 |
| α-helix | 1035 | 1 | |
| β-strand | 1036 | 1 | 35 |
| α-helix | 1037 | 1 | |
| α-helix | 1040 | 1 | |
| β-strand | 1041-1050 | 10 | 32 |
| β-strand | 1051 | 1 | 28 |
| α-helix | 1055-1059 | 5 | |
Chain C: 10 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-14 | 7 | 36 |
| β-strand | 18-24 | 7 | 36 |
| α-helix | 28-40 | 13 | |
| β-strand | 44-55 | 12 | 37 |
| α-helix | 61-69 | 9 | |
| β-strand | 73 | 1 | 38 |
| α-helix | 78-81 | 4 | |
| β-strand | 99-106 | 8 | 37 |
| α-helix | 112 | 1 | |
| β-strand | 113-116 | 4 | 39 |
| α-helix | 117-119 | 3 | |
| β-strand | 121-122 | 2 | 37 |
| β-strand | 129 | 1 | 38 |
| β-strand | 149-153 | 5 | 39 |
| β-strand | 158-168 | 11 | 37 |
| α-helix | 174-176 | 3 | |
| β-strand | 179-185 | 7 | 36 |
| α-helix | 200-202 | 3 | |
| α-helix | 204-206 | 3 | |
| α-helix | 218-220 | 3 | |
| β-strand | 229-235 | 7 | 36 |
| α-helix | 241-270 | 30 | |
Chain E: 10 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-23 | 20 | |
| β-strand | 26 | 1 | 40 |
| α-helix | 30-33 | 4 | |
| α-helix | 37-43 | 7 | |
| α-helix | 49-51 | 3 | |
| β-strand | 60-61 | 2 | 41 |
| β-strand | 64 | 1 | 40 |
| β-strand | 73-75 | 3 | 41 |
| α-helix | 84-96 | 13 | |
| β-strand | 101-105 | 5 | 41 |
| α-helix | 112-120 | 9 | |
| β-strand | 126-130 | 5 | 41 |
| α-helix | 134-136 | 3 | |
| α-helix | 139-141 | 3 | |
| β-strand | 147-150 | 4 | 42 |
| α-helix | 153-163 | 11 | |
| β-strand | 172-173 | 2 | 42 |
| α-helix | 178-183 | 6 | |
| β-strand | 190-197 | 8 | 42 |
| β-strand | 201-209 | 9 | 42 |
Chain F: 3 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 59-74 | 16 | |
| α-helix | 89-98 | 10 | |
| β-strand | 105-107 | 3 | 43 |
| β-strand | 117-119 | 3 | 43 |
| α-helix | 120-122 | 3 | |
Chain H: 2 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4-14 | 11 | 4 |
| β-strand | 25-32 | 8 | 4 |
| β-strand | 38-44 | 7 | 4 |
| β-strand | 55-61 | 7 | 4 |
| α-helix | 84-87 | 4 | |
| β-strand | 90-100 | 11 | 4 |
| β-strand | 104 | 1 | 44 |
| β-strand | 107 | 1 | 44 |
| β-strand | 113-118 | 6 | 4 |
| β-strand | 121-126 | 6 | 4 |
| α-helix | 131-133 | 3 | |
| β-strand | 139-147 | 9 | 4 |
Chain I: 3 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 16 | 1 | 45 |
| β-strand | 23 | 1 | 45 |
| β-strand | 25-29 | 5 | 46 |
| β-strand | 34-38 | 5 | 46 |
| β-strand | 45-47 | 3 | 46 |
| β-strand | 52-56 | 5 | 16 |
| α-helix | 64-67 | 4 | |
| α-helix | 70-74 | 5 | |
| β-strand | 80-81 | 2 | 47 |
| β-strand | 94-97 | 4 | 47 |
| α-helix | 109-110 | 2 | |
| β-strand | 111-114 | 4 | 47 |
| β-strand | 122-124 | 3 | 47 |
Chain J: 6 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-4 | 2 | |
| α-helix | 18-26 | 9 | |
| α-helix | 31-37 | 7 | |
| α-helix | 43-51 | 9 | |
| β-strand | 52 | 1 | 30 |
| α-helix | 56-60 | 5 | |
| α-helix | 63-64 | 2 | |
4 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| DNA-directed RNA polymerase subunit | A | protein | 1970 | Sus scrofa domesticus | I3LJR4 |
| DNA-directed RNA polymerase subunit beta | B | protein | 1174 | Sus scrofa domesticus | I3LGP4 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit RPB3 | C | protein | 271 | Sus scrofa domesticus | I3LCH3 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit E | E | protein | 210 | Sus scrofa domesticus | I3LSI7 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit F | F | protein | 127 | Sus scrofa domesticus | A0A4X1VEK9 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 | H | protein | 150 | Sus scrofa domesticus | I3LCB2 |
| DNA-directed RNA polymerase II subunit RPB9 | I | protein | 125 | Sus scrofa domesticus | P60899 |
| Uncharacterized Protein | J | protein | 67 | Sus scrofa domesticus | A0A4X1VYD0 |
| RNA_pol_L_2 domain-containing protein | K | protein | 117 | Sus scrofa domesticus | F1RKE4 |
| RNA polymerase II subunit K | L | protein | 58 | Sus scrofa domesticus | A0A4X1TRS6 |
| Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 | M | protein | 612 | Homo sapiens | Q8IXW5 |
| Unknown | N | protein | 30 | Homo sapiens | |
Sequence of entity 1 (A), FASTA
>7B7U_1 DNA-directed RNA polymerase subunit (chains A)
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
Sequence of entity 2 (B), FASTA
>7B7U_2 DNA-directed RNA polymerase subunit beta (chains B)
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
Sequence of entity 3 (C), FASTA
>7B7U_3 DNA-directed RNA polymerase II subunit RPB3 (chains C)
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL
ISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLR
PETIVLSALSGLKKKLSDLQTQLSHEIQSDV
Sequence of entity 4 (E), FASTA
>7B7U_4 DNA-directed RNA polymerase II subunit E (chains E)
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
Sequence of entity 5 (F), FASTA
>7B7U_5 DNA-directed RNA polymerase II subunit F (chains F)
MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
DELIISD
Sequence of entity 6 (H), FASTA
>7B7U_6 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
Sequence of entity 7 (I), FASTA
>7B7U_7 DNA-directed RNA polymerase II subunit RPB9 (chains I)
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
HRWTE
Sequence of entity 8 (J), FASTA
>7B7U_8 Uncharacterized Protein (chains J)
MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL
NYAPLEK
Sequence of entity 9 (K), FASTA
>7B7U_9 RNA_pol_L_2 domain-containing protein (chains K)
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
Sequence of entity 10 (L), FASTA
>7B7U_10 RNA polymerase II subunit K (chains L)
MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR
Sequence of entity 11 (M), FASTA
>7B7U_11 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 (chains M)
MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
LTIIFRTSCLPE
Sequence of entity 12 (N), FASTA
>7B7U_12 Unknown (chains N)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 6 |
Primary citation
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Fianu, I., Dienemann, C., Aibara, S. et al. Commun Biol (2021) 4:606-606. DOI 10.1038/s42003-021-02088-z · PubMed
Other PDB entries of the same protein (UniProt I3LJR4), best resolution first:
- 9G0A 3.1 Å, Influenza A/H7N9 polymerase post-cleavage cap-snatching complex
- 9FYX 3.3 Å, Influenza A/H7N9 polymerase pre-cleavage cap-snatching complex
- 7PKS 3.6 Å, Structural basis of Integrator-mediated transcription regulation
- 8RBZ 3.7 Å, Structure of Integrator-PP2A-SOSS-CTD post-termination complex
Browse structure collections
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