7F66: EIF2B-SFSV NSs-1-eIF2

eIF2B-SFSV NSs-1-eIF2. Determined by electron microscopy at 2.76 Å resolution. Released 1 Dec 2021.

Method
Electron microscopy
Resolution
2.76 Å
Organisms
Homo sapiens, Sandfly fever sicilian virus
Chains
15
Atoms
33,739
Mol. weight
670.66 kDa
Released
1 Dec 2021

Explore 7F66 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7F66 contains 214 α-helices and 237 β-strands across 15 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 14 helices, 11 β-strands

ElementResiduesLengthSheet
α-helix3-1614
α-helix22-3514
α-helix46-5914
α-helix63-8220
α-helix86-11530
α-helix116-1183
β-strand124-12741
α-helix132-14312
β-strand149-15351
α-helix160-17011
β-strand175-17841
α-helix183-1864
β-strand192-19651
β-strand199-20022
β-strand206-20832
α-helix212-22110
β-strand226-22941
α-helix232-2343
β-strand23512
α-helix248-2514
β-strand274-27632
α-helix278-2803
β-strand283-28641
β-strand289-29131
α-helix293-30311
Chain B: 16 helices, 11 β-strands
ElementResiduesLengthSheet
α-helix5-1612
α-helix22-3514
α-helix42-5817
α-helix63-8321
α-helix86-10419
α-helix107-1159
α-helix116-1183
β-strand124-12743
α-helix132-14312
β-strand149-15353
α-helix160-16910
β-strand175-17843
α-helix180-1823
α-helix183-1864
β-strand192-19543
β-strand199-20024
β-strand206-20834
α-helix212-22211
β-strand226-22943
α-helix232-2343
β-strand23514
α-helix248-2514
β-strand274-27634
α-helix278-2803
β-strand283-28643
β-strand289-29133
α-helix293-30210
Chain C: 18 helices, 14 β-strands
ElementResiduesLengthSheet
α-helix9-2416
α-helix31-4717
α-helix54-7118
α-helix76-9722
α-helix109-1135
α-helix129-14517
α-helix147-1537
β-strand164-16855
α-helix172-18110
β-strand188-19365
α-helix200-20910
β-strand214-21855
α-helix222-2265
β-strand231-23445
β-strand238-23926
β-strand245-24846
α-helix251-26111
β-strand265-26845
α-helix271-2733
β-strand27416
β-strand28817
α-helix297-2993
α-helix301-3044
β-strand307-30828
β-strand31117
β-strand313-31646
α-helix318-3203
β-strand323-32645
β-strand329-33135
α-helix333-3353
α-helix336-3416
α-helix346-3483
Chain D: 20 helices, 14 β-strands
ElementResiduesLengthSheet
α-helix10-2415
α-helix31-4818
α-helix54-7118
α-helix77-9721
α-helix109-1146
α-helix129-14517
α-helix147-1559
β-strand163-16869
α-helix172-18110
β-strand187-19269
α-helix200-2089
β-strand214-21749
α-helix219-2213
α-helix222-2254
α-helix226-2283
β-strand231-23449
β-strand238-239210
β-strand245-248410
α-helix251-26111
β-strand265-26849
α-helix271-2733
β-strand274110
β-strand288111
α-helix297-2993
α-helix301-3044
β-strand306-308312
β-strand311111
β-strand313-316410
α-helix318-3203
β-strand323-32649
β-strand329-33139
α-helix333-3353
α-helix336-3416
α-helix346-3483
Chain E: 11 helices, 12 β-strands
ElementResiduesLengthSheet
β-strand4-8513
α-helix37-459
β-strand51-55513
α-helix561
α-helix63-675
β-strand76-79413
α-helix86-938
α-helix94-963
β-strand101-105513
α-helix115-1239
β-strand128-133613
β-strand156-160514
β-strand166113
β-strand167-172614
β-strand179-183515
α-helix184-1896
β-strand192-196514
β-strand200-207813
α-helix209-2179
α-helix224-2285
α-helix229-2346
β-strand263-268613
α-helix278-29417
Chain F: 11 helices, 14 β-strands
ElementResiduesLengthSheet
β-strand3-8616
β-strand30117
β-strand33117
α-helix37-459
β-strand52-54316
α-helix55-562
α-helix63-675
β-strand76-78316
α-helix86-938
α-helix94-963
β-strand100-105616
α-helix115-1239
β-strand128-133616
β-strand156-160518
β-strand166116
β-strand167-172618
β-strand179-183519
α-helix184-1896
β-strand192-196518
β-strand200-207816
α-helix209-2179
α-helix224-2285
α-helix229-2346
β-strand263-268616
α-helix278-29114
Chain G: 23 helices, 17 β-strands
ElementResiduesLengthSheet
α-helix169-1724
α-helix178-1803
β-strand185120
α-helix192-1954
α-helix205-21511
α-helix222-23918
α-helix242-2432
α-helix248-26619
α-helix268-2703
α-helix271-28515
α-helix293-30816
α-helix309-3135
α-helix314-32613
β-strand332-336512
α-helix340-35213
β-strand357-362612
α-helix369-37911
β-strand383-387512
α-helix388-3903
α-helix391-3944
α-helix395-3973
β-strand400-404512
β-strand407-408221
β-strand414-416321
α-helix420-43011
β-strand434-437412
α-helix440-4423
β-strand443121
β-strand457120
α-helix460-4634
β-strand467122
β-strand470122
β-strand482-48439
β-strand487120
β-strand490-492321
α-helix494-4963
β-strand499-502412
β-strand505-507312
α-helix509-5113
α-helix512-5187
Chain H: 23 helices, 17 β-strands
ElementResiduesLengthSheet
α-helix167-1726
α-helix175-1773
α-helix178-1803
β-strand185123
α-helix192-1954
α-helix205-21511
α-helix222-23918
α-helix242-2432
α-helix248-26619
α-helix271-28515
α-helix293-30816
α-helix309-3135
α-helix314-32613
β-strand332-33658
α-helix340-35213
β-strand357-36268
α-helix369-37911
β-strand383-38758
α-helix388-3903
α-helix391-3944
α-helix395-3973
β-strand400-40458
β-strand407-408224
β-strand414-417424
α-helix420-42910
β-strand434-43748
α-helix440-4423
β-strand443124
β-strand457123
α-helix460-4634
β-strand466-467225
β-strand470-471225
β-strand482-48545
β-strand487123
β-strand489-492424
α-helix494-4963
β-strand499-50248
β-strand505-50848
α-helix509-5113
α-helix512-5187

7 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Translation initiation factor eIF-2B subunit alphaA, Bprotein307Homo sapiensQ14232 (AlphaFold model)
Translation initiation factor eIF-2B subunit betaC, Dprotein351Homo sapiensP49770 (AlphaFold model)
Translation initiation factor eIF-2B subunit gammaE, Fprotein452Homo sapiensQ9NR50 (AlphaFold model)
Translation initiation factor eIF-2B subunit deltaG, Hprotein523Homo sapiensQ9UI10 (AlphaFold model)
Translation initiation factor eIF-2B subunit epsilonI, Jprotein721Homo sapiensQ13144
Non-structural protein NS-SK, Lprotein261Sandfly fever sicilian virusP12792
Eukaryotic translation initiation factor 2 subunit 1Nprotein315Homo sapiensP05198
eIF2betaOprotein14Homo sapiens
Eukaryotic translation initiation factor 2 subunit 3Sprotein472Homo sapiensP41091
Sequence of entity 1 (A, B), FASTA
>7F66_1 Translation initiation factor eIF-2B subunit alpha (chains A, B)
GPMDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCG
VDSSVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTF
IKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVV
LDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRL
FPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSD
ELIKLYL
Sequence of entity 2 (C, D), FASTA
>7F66_2 Translation initiation factor eIF-2B subunit beta (chains C, D)
MPGSAAKGSELSERIESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMEL
IRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGGLNE
DFSFHYAQLQSNIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
ANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEG
DILEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPDDHVL
Sequence of entity 3 (E, F), FASTA
>7F66_3 Translation initiation factor eIF-2B subunit gamma (chains E, F)
MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGAD
IKDCLIGSGQRIEAKAKRVNEVIVGNDQLMEI
Sequence of entity 4 (G, H), FASTA
>7F66_4 Translation initiation factor eIF-2B subunit delta (chains G, H)
MAAVAVAVREDSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET
GSAVSAAQCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKG
EQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLF
SHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDY
TTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREEEAKSEL
RAAIDRYVQEKIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVV
VDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGT
AQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHVALANWQNHA
SLRLLNLVYDVTPPELVDLVITELGMIPCSSVPVVLRVKSSDQ
Sequence of entity 5 (I, J), FASTA
>7F66_5 Translation initiation factor eIF-2B subunit epsilon (chains I, J)
MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS
KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV
RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV
MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV
RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV
SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV
LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK
ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM
KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS
RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVV
LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG
ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED
D
Sequence of entity 6 (K, L), FASTA
>7F66_6 Non-structural protein NS-S (chains K, L)
MNSQYMFDYPAINIDVRCHRLLSSVSYVAYNKFHTHDVSTYEHCEIPLEKLRLGFGRRNS
LADFYSLGELPASWGPACYFSSVKPMMYTFQGMASDLSRFDLTSFSRKGLPNVLKALSWP
LGIPDCEIFSICSDRFVRGLQTRDQLMSYILRMGDSHSLDECIVQAHKKILQEARRLGLS
DEHYNGYDLFREIGSLVCLRLINAEPFDTASSGEALDVRTVIRSYRASDPSTGLTEYGNS
LWTPIHSHVDENDESSSDSDF
Sequence of entity 7 (N), FASTA
>7F66_7 Eukaryotic translation initiation factor 2 subunit 1 (chains N)
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT
TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEV
DGDDDAEEMEAKAED
Sequence of entity 8 (O), FASTA
>7F66_8 eIF2beta (chains O)
XXXXXXXXXXXXXX
Sequence of entity 9 (S), FASTA
>7F66_9 Eukaryotic translation initiation factor 2 subunit 3 (chains S)
MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD

Primary citation

eIF2B-capturing viral protein NSs suppresses the integrated stress response. Kashiwagi, K., Shichino, Y., Osaki, T. et al. Nat Commun (2021) 12:7102-7102. DOI 10.1038/s41467-021-27337-x · PubMed

Other PDB entries of the same protein (UniProt Q14232 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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