7JUP: Human TRPA1

Structure of human TRPA1 in complex with antagonist compound 21. Determined by electron microscopy at 3.05 Å resolution. Released 31 Mar 2021.

Method

Electron microscopy

Resolution

3.05 Å

Organism

Homo sapiens

Chains

4

Atoms

17,852

Mol. weight

292.07 kDa

Ligands

VKM

Released

31 Mar 2021

Explore 7JUP in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7JUP contains 142 α-helices and 20 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 38 helices, 5 β-strands

Molecules and chains

>7JUP_1 Transient receptor potential cation channel subfamily A member 1 (chains A, B, C, D)
SPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGAL
FLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALL
LSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMI
EYLPECMKVLLDFCMLHSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALN
AMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGMAFN
STGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVL
EWIIYTTGIIFVLPLFVEIPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVIL
KTLLRSTVVFIFLLLAFGLSFYILLNLQDPFSSPLLSIIQTFSMMLGDINYRESFLEPYL
RNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIADVQKHASLKRIAMQVELHTSLE
KKLPLWFLRKVDQKSTIVYPNKPRSGGMLFHIFCFLFCTGEIRQEIPNADKSLEMEILKQ
KYRLKDLTFLLEKQHELIKLIIQKMEIISET

Ligands and cofactors

Primary citation

Tetrahydrofuran-Based Transient Receptor Potential Ankyrin 1 (TRPA1) Antagonists: Ligand-Based Discovery, Activity in a Rodent Asthma Model, and Mechanism-of-Action via Cryogenic Electron Microscopy. Terrett, J.A., Chen, H., Shore, D.G. et al. J Med Chem (2021) 64:3843-3869. DOI 10.1021/acs.jmedchem.0c02023 · PubMed

Related structures

Other PDB entries of the same protein (UniProt O75762 (AlphaFold model), which also has an AlphaFold model), best resolution first:

• 6HC8 1.9 Å, Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPA1 (313-339)
• 9VU1 2.59 Å, Structure of hTRPA1 complexed with LIQA
• 6V9V 2.6 Å, Structure of TRPA1 modified by Bodipy-iodoacetamide with bound calcium, LMNG
• 7OR0 2.64 Å, Cryo-EM structure of the human TRPA1 ion channel in complex with the antagonist 3-60,…
• 7OR1 2.64 Å, Cryo-EM structure of the human TRPA1 ion channel in complex with the antagonist 3-60,…
• 9MOE 2.7 Å, Preclinical and clinical evaluation of a novel TRPA1 antagonist LY3526318
• 6PQQ 2.81 Å, Cryo-EM structure of human TRPA1 C621S mutant in the apo state
• 6PQO 2.88 Å, Cryo-EM structure of the human TRPA1 ion channel in complex with the covalent agonist…
• 6X2J 3.0 Å, Structure of human TRPA1 in complex with agonist GNE551
• 6PQP 3.06 Å, Cryo-EM structure of the human TRPA1 ion channel in complex with the covalent agonist BITC
• 6V9W 3.1 Å, Structure of TRPA1 (ligand-free) with bound calcium, LMNG
• 9M8S 3.1 Å, Cryo-EM structure of the human TRPA1 ion channel in ligand-free state.

Browse structure collections

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