7OZO: RNA Polymerase II dimer
RNA Polymerase II dimer (Class 2). Determined by electron microscopy at 3.8 Å resolution. Released 6 Oct 2021.
- Method
- Electron microscopy
- Resolution
- 3.8 Å
- Organism
- Sus scrofa domesticus
- Chains
- 24
- Atoms
- 54,330
- Mol. weight
- 1035.42 kDa
- Ligands
- ZN
- Released
- 6 Oct 2021
Explore 7OZO in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7OZO contains 302 α-helices and 388 β-strands across 24 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chains A and M: 54 helices, 52 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 361-364 | 4 | |
| β-strand | 365 | 1 | 1 |
| β-strand | 367-369 | 3 | 2 |
| β-strand | 377-381 | 5 | 2 |
| α-helix | 382-387 | 6 | |
| β-strand | 389-393 | 5 | 3 |
| α-helix | 396-398 | 3 | |
| α-helix | 399-408 | 10 | |
| β-strand | 416-420 | 5 | 3 |
| β-strand | 426-428 | 3 | 3 |
| α-helix | 435-438 | 4 | |
| β-strand | 445-449 | 5 | 3 |
| α-helix | 450 | 1 | |
| β-strand | 455-458 | 4 | 2 |
| β-strand | 470-477 | 8 | 2 |
| β-strand | 482-484 | 3 | 2 |
| β-strand | 501 | 1 | 1 |
| β-strand | 504 | 1 | 2 |
| α-helix | 509-518 | 10 | |
| β-strand | 520 | 1 | 2 |
| α-helix | 521-524 | 4 | |
| α-helix | 539-548 | 10 | |
| β-strand | 554-555 | 2 | 4 |
| α-helix | 557-565 | 9 | |
| α-helix | 574 | 1 | |
| β-strand | 575 | 1 | 5 |
| α-helix | 576-577 | 2 | |
| β-strand | 579 | 1 | 6 |
| β-strand | 581 | 1 | 7 |
| β-strand | 585 | 1 | 6 |
| β-strand | 586-587 | 2 | 4 |
| α-helix | 588-595 | 8 | |
| β-strand | 602-605 | 4 | 8 |
| α-helix | 611-615 | 5 | |
| β-strand | 627-631 | 5 | 8 |
| β-strand | 634-637 | 4 | 8 |
| α-helix | 652-659 | 8 | |
| α-helix | 662-683 | 22 | |
| β-strand | 686 | 1 | 9 |
| α-helix | 689-692 | 4 | |
| α-helix | 696-721 | 26 | |
| α-helix | 733-759 | 27 | |
| α-helix | 765-772 | 8 | |
| α-helix | 778-781 | 4 | |
| α-helix | 782-786 | 5 | |
| β-strand | 789-790 | 2 | 10 |
| β-strand | 793 | 1 | 11 |
| β-strand | 796 | 1 | 11 |
| α-helix | 811 | 1 | |
| β-strand | 822-823 | 2 | 10 |
| α-helix | 833-868 | 36 | |
| β-strand | 872-873 | 2 | 12 |
| β-strand | 879-880 | 2 | 12 |
| β-strand | 886-888 | 3 | 12 |
| α-helix | 891-893 | 3 | |
| β-strand | 896 | 1 | 13 |
| β-strand | 902-905 | 4 | 14 |
| α-helix | 915-920 | 6 | |
| α-helix | 927-933 | 7 | |
| β-strand | 934 | 1 | 15 |
| α-helix | 936-944 | 9 | |
| α-helix | 946-969 | 24 | |
| β-strand | 976-979 | 4 | 14 |
| α-helix | 983-993 | 11 | |
| α-helix | 1001 | 1 | |
| β-strand | 1002 | 1 | 15 |
| α-helix | 1006-1019 | 14 | |
| α-helix | 1028-1037 | 10 | |
| α-helix | 1039-1048 | 10 | |
| α-helix | 1051-1056 | 6 | |
| α-helix | 1062-1079 | 18 | |
| β-strand | 1080 | 1 | 13 |
| α-helix | 1081-1082 | 2 | |
| α-helix | 1087-1099 | 13 | |
| α-helix | 1121-1128 | 8 | |
| β-strand | 1139-1142 | 4 | 16 |
| α-helix | 1146-1148 | 3 | |
| α-helix | 1152-1154 | 3 | |
| α-helix | 1155-1161 | 7 | |
| β-strand | 1164 | 1 | 17 |
| α-helix | 1166-1169 | 4 | |
| β-strand | 1170-1176 | 7 | 18 |
| β-strand | 1177 | 1 | 19 |
| α-helix | 1190-1198 | 9 | |
| β-strand | 1210 | 1 | 19 |
| β-strand | 1214-1216 | 3 | 18 |
| α-helix | 1218-1224 | 7 | |
| α-helix | 1228-1239 | 12 | |
| β-strand | 1243-1247 | 5 | 18 |
| β-strand | 1255-1261 | 7 | 18 |
| α-helix | 1263-1266 | 4 | |
| α-helix | 1282-1292 | 11 | |
| β-strand | 1299 | 1 | 17 |
| β-strand | 1307-1310 | 4 | 16 |
| β-strand | 1320-1322 | 3 | 20 |
| β-strand | 1328-1330 | 3 | 20 |
| β-strand | 1335-1338 | 4 | 16 |
| α-helix | 1343-1347 | 5 | |
| β-strand | 1358-1359 | 2 | 16 |
| α-helix | 1362-1368 | 7 | |
| α-helix | 1371-1388 | 18 | |
| α-helix | 1395-1405 | 11 | |
| α-helix | 1413-1415 | 3 | |
| β-strand | 1471-1475 | 5 | 21 |
| α-helix | 1479-1481 | 3 | |
| β-strand | 1484 | 1 | 22 |
Chains B and N: 47 helices, 64 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 19-36 | 18 | |
| α-helix | 41-49 | 9 | |
| α-helix | 50-54 | 5 | |
| α-helix | 55-60 | 6 | |
| α-helix | 62-64 | 3 | |
| β-strand | 65-67 | 3 | 23 |
| β-strand | 83-93 | 11 | 23 |
| β-strand | 97-98 | 2 | 24 |
| β-strand | 106-107 | 2 | 24 |
| α-helix | 110-116 | 7 | |
| β-strand | 121-133 | 13 | 23 |
| β-strand | 140-153 | 14 | 23 |
| α-helix | 168-173 | 6 | |
| β-strand | 185-187 | 3 | 25 |
| β-strand | 190-193 | 4 | 25 |
| β-strand | 196-200 | 5 | 26 |
| α-helix | 201 | 1 | |
| β-strand | 206-209 | 4 | 27 |
| β-strand | 215-223 | 9 | 27 |
| β-strand | 233-240 | 8 | 27 |
| α-helix | 249-252 | 4 | |
| β-strand | 256-259 | 4 | 27 |
| β-strand | 263 | 1 | 28 |
| β-strand | 266-268 | 3 | 27 |
| α-helix | 269-276 | 8 | |
| α-helix | 281-288 | 8 | |
| α-helix | 295-309 | 15 | |
| α-helix | 314-323 | 10 | |
| β-strand | 325 | 1 | 28 |
| α-helix | 332-341 | 10 | |
| α-helix | 342-346 | 5 | |
| α-helix | 358-377 | 20 | |
| α-helix | 381-384 | 4 | |
| α-helix | 388-390 | 3 | |
| β-strand | 391-394 | 4 | 26 |
| α-helix | 396-425 | 30 | |
| α-helix | 431-434 | 4 | |
| α-helix | 437-450 | 14 | |
| β-strand | 461 | 1 | 29 |
| β-strand | 468-469 | 2 | 25 |
| α-helix | 470 | 1 | |
| α-helix | 475-482 | 8 | |
| β-strand | 484-486 | 3 | 26 |
| α-helix | 491-495 | 5 | |
| α-helix | 501-502 | 2 | |
| α-helix | 503-505 | 3 | |
| β-strand | 509 | 1 | 30 |
| β-strand | 523-525 | 3 | 26 |
| β-strand | 526 | 1 | 30 |
| β-strand | 531-532 | 2 | 31 |
| α-helix | 539-547 | 9 | |
| α-helix | 558-561 | 4 | |
| β-strand | 565 | 1 | 32 |
| β-strand | 566-569 | 4 | 33 |
| β-strand | 572-573 | 2 | 33 |
| β-strand | 577 | 1 | 32 |
| α-helix | 580-592 | 13 | |
| β-strand | 602-606 | 5 | 33 |
| α-helix | 607-609 | 3 | |
| β-strand | 611-615 | 5 | 33 |
| β-strand | 621-627 | 7 | 31 |
| β-strand | 628 | 1 | 34 |
| β-strand | 633 | 1 | 34 |
| α-helix | 637-644 | 8 | |
| α-helix | 653-659 | 7 | |
| β-strand | 662-666 | 5 | 31 |
| α-helix | 667-671 | 5 | |
| α-helix | 679-683 | 5 | |
| β-strand | 695-696 | 2 | 31 |
| α-helix | 700-703 | 4 | |
| α-helix | 706-709 | 4 | |
| α-helix | 719-731 | 13 | |
| β-strand | 732 | 1 | 35 |
| β-strand | 748-751 | 4 | 36 |
| β-strand | 759-760 | 2 | 37 |
| α-helix | 763-767 | 5 | |
| β-strand | 776-782 | 7 | 38 |
| β-strand | 783 | 1 | 9 |
| β-strand | 794-797 | 4 | 38 |
| α-helix | 798-802 | 5 | |
| β-strand | 808-818 | 11 | 36 |
| β-strand | 827-828 | 2 | 39 |
| β-strand | 837-839 | 3 | 39 |
| β-strand | 844 | 1 | 40 |
| β-strand | 853 | 1 | 41 |
| α-helix | 854-855 | 2 | |
| β-strand | 859-860 | 2 | 36 |
| β-strand | 864 | 1 | 40 |
| β-strand | 865-867 | 3 | 41 |
| β-strand | 870-871 | 2 | 39 |
| β-strand | 889-891 | 3 | 39 |
| β-strand | 894-895 | 2 | 41 |
| β-strand | 902-911 | 10 | 36 |
| β-strand | 917-927 | 11 | 36 |
| β-strand | 934-937 | 4 | 38 |
| β-strand | 943-949 | 7 | 38 |
| β-strand | 956-957 | 2 | 42 |
| β-strand | 965-967 | 3 | 38 |
| α-helix | 969-971 | 3 | |
| α-helix | 978-993 | 16 | |
| α-helix | 996 | 1 | |
| β-strand | 997-998 | 2 | 37 |
| α-helix | 1008-1016 | 9 | |
| β-strand | 1025-1026 | 2 | 38 |
| β-strand | 1028-1029 | 2 | 42 |
| β-strand | 1036 | 1 | 42 |
| α-helix | 1037 | 1 | |
| α-helix | 1040 | 1 | |
| β-strand | 1041-1050 | 10 | 38 |
| β-strand | 1051 | 1 | 35 |
| α-helix | 1055-1060 | 6 | |
Chains C and O: 9 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-14 | 7 | 43 |
| β-strand | 18-24 | 7 | 43 |
| α-helix | 28-36 | 9 | |
| α-helix | 37-41 | 5 | |
| β-strand | 44-55 | 12 | 44 |
| α-helix | 61-70 | 10 | |
| β-strand | 73 | 1 | 45 |
| α-helix | 78-81 | 4 | |
| β-strand | 99-106 | 8 | 44 |
| β-strand | 113-116 | 4 | 46 |
| α-helix | 117-119 | 3 | |
| β-strand | 121-122 | 2 | 44 |
| β-strand | 129 | 1 | 45 |
| β-strand | 149-153 | 5 | 46 |
| β-strand | 158-168 | 11 | 44 |
| α-helix | 174-176 | 3 | |
| β-strand | 179-182 | 4 | 43 |
| β-strand | 185 | 1 | 43 |
| α-helix | 204-206 | 3 | |
| α-helix | 218-221 | 4 | |
| β-strand | 229-235 | 7 | 43 |
| α-helix | 241-270 | 30 | |
Chains D and P: 10 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 16 | 1 | 47 |
| β-strand | 21 | 1 | 47 |
| α-helix | 25-28 | 4 | |
| β-strand | 30-31 | 2 | 21 |
| α-helix | 34-46 | 13 | |
| α-helix | 47-51 | 5 | |
| α-helix | 55-58 | 4 | |
| α-helix | 59-70 | 12 | |
| α-helix | 77-88 | 12 | |
| α-helix | 94-103 | 10 | |
| α-helix | 108-114 | 7 | |
| α-helix | 116-121 | 6 | |
| α-helix | 128-137 | 10 | |
| β-strand | 140 | 1 | 48 |
Chains E and Q: 10 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-24 | 22 | |
| β-strand | 26-27 | 2 | 49 |
| α-helix | 30-33 | 4 | |
| α-helix | 37-44 | 8 | |
| β-strand | 60-64 | 5 | 49 |
| β-strand | 71-75 | 5 | 49 |
| β-strand | 81-82 | 2 | 50 |
| α-helix | 84-97 | 14 | |
| β-strand | 101-106 | 6 | 49 |
| β-strand | 109-110 | 2 | 50 |
| α-helix | 112-120 | 9 | |
| β-strand | 126-131 | 6 | 49 |
| α-helix | 132-135 | 4 | |
| β-strand | 147-151 | 5 | 51 |
| α-helix | 152 | 1 | |
| α-helix | 153-163 | 11 | |
| α-helix | 171 | 1 | |
| β-strand | 172-173 | 2 | 51 |
| α-helix | 178-183 | 6 | |
| β-strand | 190-195 | 6 | 51 |
| β-strand | 203-209 | 7 | 51 |
Chains F and R: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 56 | 1 | 52 |
| α-helix | 57-58 | 2 | |
| α-helix | 59-74 | 16 | |
| β-strand | 79 | 1 | 22 |
| α-helix | 82-83 | 2 | |
| α-helix | 89-99 | 11 | |
| β-strand | 105-109 | 5 | 21 |
| β-strand | 115-119 | 5 | 21 |
| β-strand | 124 | 1 | 52 |
Chains G and S: 4 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2-13 | 12 | 21 |
| α-helix | 15-17 | 3 | |
| α-helix | 22-33 | 12 | |
| β-strand | 38-39 | 2 | 21 |
| β-strand | 43-54 | 12 | 21 |
| β-strand | 57-59 | 3 | 21 |
| α-helix | 60 | 1 | |
| α-helix | 65 | 1 | |
| β-strand | 66-77 | 12 | 21 |
| β-strand | 83-92 | 10 | 53 |
| β-strand | 97-101 | 5 | 53 |
| β-strand | 104-108 | 5 | 53 |
| β-strand | 117-118 | 2 | 54 |
| β-strand | 128-130 | 3 | 54 |
| β-strand | 136-137 | 2 | 54 |
| β-strand | 142-153 | 12 | 53 |
| β-strand | 156-162 | 7 | 53 |
Chains H and T: 1 helix, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4-15 | 12 | 7 |
| β-strand | 25-31 | 7 | 7 |
| β-strand | 38-44 | 7 | 7 |
| β-strand | 55-61 | 7 | 7 |
| β-strand | 65 | 1 | 55 |
| α-helix | 69-71 | 3 | |
| β-strand | 74 | 1 | 5 |
| β-strand | 83 | 1 | 55 |
| β-strand | 90-98 | 9 | 7 |
| β-strand | 101-102 | 2 | 7 |
| β-strand | 111-118 | 8 | 7 |
| β-strand | 121-128 | 8 | 7 |
| β-strand | 140-147 | 8 | 7 |
4 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| DNA-directed RNA polymerase subunit | A, M | protein | 1970 | Sus scrofa domesticus | |
| DNA-directed RNA polymerase subunit beta | B, N | protein | 1174 | Sus scrofa domesticus | A0A0B8RVL1 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit RPB3 | C, O | protein | 275 | Sus scrofa domesticus | A0A481DF93 (AlphaFold model) |
| RNA polymerase II subunit D | D, P | protein | 142 | Sus scrofa domesticus | A0A287ADR4 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit E | E, Q | protein | 210 | Sus scrofa domesticus | I3LSI7 (AlphaFold model) |
| DNA-directed RNA polymerase II subunit F | F, R | protein | 127 | Sus scrofa domesticus | A0A4X1VEK9 |
| DNA-directed RNA polymerase II subunit RPB7 | G, S | protein | 172 | Sus scrofa domesticus | I3LJZ9 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 | H, T | protein | 150 | Sus scrofa domesticus | I3LCB2 |
| DNA-directed RNA polymerase II subunit RPB9 | I, U | protein | 125 | Sus scrofa domesticus | P60899 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC5 | J, V | protein | 67 | Sus scrofa domesticus | A0A7K6NXI9 |
| RNA_pol_L_2 domain-containing protein | K, W | protein | 117 | Sus scrofa domesticus | F1RKE4 |
| RNA polymerase II subunit K | L, X | protein | 58 | Sus scrofa domesticus | A0A4X1TRS6 |
Sequence of entity 1 (A, M), FASTA
>7OZO_1 DNA-directed RNA polymerase subunit (chains A, M)
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
Sequence of entity 2 (B, N), FASTA
>7OZO_2 DNA-directed RNA polymerase subunit beta (chains B, N)
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
Sequence of entity 3 (C, O), FASTA
>7OZO_3 DNA-directed RNA polymerase II subunit RPB3 (chains C, O)
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL
ISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLR
PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
Sequence of entity 4 (D, P), FASTA
>7OZO_4 RNA polymerase II subunit D (chains D, P)
MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
Sequence of entity 5 (E, Q), FASTA
>7OZO_5 DNA-directed RNA polymerase II subunit E (chains E, Q)
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
Sequence of entity 6 (F, R), FASTA
>7OZO_6 DNA-directed RNA polymerase II subunit F (chains F, R)
MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
DELIISD
Sequence of entity 7 (G, S), FASTA
>7OZO_7 DNA-directed RNA polymerase II subunit RPB7 (chains G, S)
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
Sequence of entity 8 (H, T), FASTA
>7OZO_8 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H, T)
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
Sequence of entity 9 (I, U), FASTA
>7OZO_9 DNA-directed RNA polymerase II subunit RPB9 (chains I, U)
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
HRWTE
Sequence of entity 10 (J, V), FASTA
>7OZO_10 DNA-directed RNA polymerases I, II, and III subunit RPABC5 (chains J, V)
MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL
NYAPLEK
Sequence of entity 11 (K, W), FASTA
>7OZO_11 RNA_pol_L_2 domain-containing protein (chains K, W)
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
Sequence of entity 12 (L, X), FASTA
>7OZO_12 RNA polymerase II subunit K (chains L, X)
MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 10 |
Primary citation
Structure of an inactive RNA polymerase II dimer. Aibara, S., Dienemann, C., Cramer, P. Nucleic Acids Res (2021) 49:10747-10755. DOI 10.1093/nar/gkab783 · PubMed
Other PDB entries of the same protein (UniProt A0A0B8RVL1 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9HVQ 2.0 Å, Structure of the transcribing Pol II-DSIF-PAF-SPT6-RECQL5 complex
- 8QEP 2.5 Å, RNA polymerase II bound to Alu RNA right arm
- 9HVO 2.8 Å, Structure of the transcribing Pol II-RECQL5 complex
- 8QEQ 3.1 Å, RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation
- 9G0A 3.1 Å, Influenza A/H7N9 polymerase post-cleavage cap-snatching complex
- 9FYX 3.3 Å, Influenza A/H7N9 polymerase pre-cleavage cap-snatching complex
- 9J0O 3.3 Å, Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
- 9J0P 3.3 Å, Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
- 9J0N 3.4 Å, Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
- 7OZN 3.5 Å, RNA Polymerase II dimer (Class 1)
- 9HWG 3.5 Å, Structure of the transcribing Pol II-TCR-RECQL5 complex
- 9QEQ 3.5 Å, Structure of the transcribing Pol II-DSIF-SPT6-U1 snRNP complex
Browse structure collections
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