7ZI4: Human INO80 complex
Cryo-EM structure of the human INO80 complex bound to a WT nucleosome. Determined by electron microscopy at 3.2 Å resolution. Released 19 Apr 2023.
- Method
- Electron microscopy
- Resolution
- 3.2 Å
- Organisms
- Homo sapiens, synthetic construct
- Chains
- 20
- Atoms
- 42,294
- Mol. weight
- 820.3 kDa
- Ligands
- ADP, BEF, ZN
- Released
- 19 Apr 2023
Explore 7ZI4 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ZI4 contains 227 α-helices and 216 β-strands across 18 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 24 helices, 25 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 13-14 | 2 | |
| β-strand | 15 | 1 | 1 |
| β-strand | 26 | 1 | 2 |
| β-strand | 32 | 1 | 2 |
| β-strand | 35-36 | 2 | 3 |
| β-strand | 39-40 | 2 | 3 |
| α-helix | 43-58 | 16 | |
| β-strand | 61 | 1 | 4 |
| β-strand | 65-69 | 5 | 5 |
| α-helix | 76-86 | 11 | |
| β-strand | 93-97 | 5 | 5 |
| α-helix | 98-100 | 3 | |
| α-helix | 108-118 | 11 | |
| β-strand | 120-140 | 21 | 6 |
| β-strand | 157-163 | 7 | 6 |
| β-strand | 166-172 | 7 | 6 |
| α-helix | 174-182 | 9 | |
| β-strand | 189-194 | 6 | 6 |
| β-strand | 200-206 | 7 | 6 |
| α-helix | 207-209 | 3 | |
| β-strand | 215 | 1 | 7 |
| β-strand | 220-221 | 2 | 6 |
| α-helix | 222-224 | 3 | |
| β-strand | 229-236 | 8 | 6 |
| β-strand | 239 | 1 | 6 |
| α-helix | 240-248 | 9 | |
| α-helix | 260-262 | 3 | |
| α-helix | 265-266 | 2 | |
| α-helix | 270-272 | 3 | |
| α-helix | 273-288 | 16 | |
| β-strand | 292-296 | 5 | 6 |
| β-strand | 298-302 | 5 | 5 |
| α-helix | 304-306 | 3 | |
| α-helix | 309-319 | 11 | |
| β-strand | 326-331 | 6 | 5 |
| β-strand | 333 | 1 | 8 |
| β-strand | 336-337 | 2 | 9 |
| α-helix | 338 | 1 | |
| β-strand | 345-346 | 2 | 9 |
| α-helix | 347-349 | 3 | |
| α-helix | 352-357 | 6 | |
| β-strand | 359-362 | 4 | 5 |
| α-helix | 368-382 | 15 | |
| α-helix | 388-400 | 13 | |
| α-helix | 404-419 | 16 | |
| α-helix | 427-436 | 10 | |
| β-strand | 438 | 1 | 10 |
| α-helix | 440-449 | 10 | |
| α-helix | 451-453 | 3 | |
Chain B: 18 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 16-18 | 3 | |
| β-strand | 22 | 1 | 11 |
| α-helix | 38-40 | 3 | |
| β-strand | 42-43 | 2 | 12 |
| β-strand | 46-47 | 2 | 12 |
| α-helix | 50-65 | 16 | |
| β-strand | 68 | 1 | 1 |
| β-strand | 71-76 | 6 | 10 |
| α-helix | 83-94 | 12 | |
| β-strand | 100-104 | 5 | 10 |
| α-helix | 115-123 | 9 | |
| β-strand | 128-147 | 20 | 7 |
| β-strand | 159-164 | 6 | 7 |
| β-strand | 169-174 | 6 | 7 |
| α-helix | 176-184 | 9 | |
| β-strand | 191-196 | 6 | 7 |
| β-strand | 202-207 | 6 | 7 |
| β-strand | 224 | 1 | 7 |
| β-strand | 233-243 | 11 | 7 |
| α-helix | 244-250 | 7 | |
| α-helix | 259-262 | 4 | |
| α-helix | 270-286 | 17 | |
| β-strand | 290-292 | 3 | 7 |
| β-strand | 295-299 | 5 | 10 |
| α-helix | 306-315 | 10 | |
| β-strand | 323-328 | 6 | 10 |
| β-strand | 333-334 | 2 | 13 |
| α-helix | 335 | 1 | |
| β-strand | 341-342 | 2 | 13 |
| α-helix | 343-345 | 3 | |
| α-helix | 348-353 | 6 | |
| β-strand | 354-358 | 5 | 10 |
| α-helix | 364-378 | 15 | |
| β-strand | 382 | 1 | 14 |
| α-helix | 385-396 | 12 | |
| α-helix | 400-415 | 16 | |
| β-strand | 421 | 1 | 14 |
| α-helix | 424-432 | 9 | |
| β-strand | 434 | 1 | 15 |
| α-helix | 436-444 | 9 | |
| β-strand | 451 | 1 | 16 |
Chain C: 20 helices, 26 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 3-5 | 3 | 17 |
| α-helix | 10-14 | 5 | |
| β-strand | 15 | 1 | 18 |
| β-strand | 26 | 1 | 19 |
| β-strand | 32 | 1 | 19 |
| β-strand | 35-36 | 2 | 20 |
| β-strand | 39-40 | 2 | 20 |
| α-helix | 43-58 | 16 | |
| β-strand | 61 | 1 | 11 |
| β-strand | 65-69 | 5 | 15 |
| α-helix | 76-87 | 12 | |
| β-strand | 93-97 | 5 | 15 |
| α-helix | 108-119 | 12 | |
| β-strand | 120-142 | 23 | 21 |
| β-strand | 154-162 | 9 | 21 |
| β-strand | 167-172 | 6 | 21 |
| α-helix | 174-182 | 9 | |
| β-strand | 189-194 | 6 | 21 |
| β-strand | 200-206 | 7 | 21 |
| β-strand | 220-221 | 2 | 21 |
| α-helix | 222-224 | 3 | |
| β-strand | 229-239 | 11 | 21 |
| α-helix | 240-248 | 9 | |
| α-helix | 256-261 | 6 | |
| α-helix | 273-288 | 16 | |
| β-strand | 293-296 | 4 | 21 |
| β-strand | 298-302 | 5 | 15 |
| α-helix | 304-306 | 3 | |
| α-helix | 309-319 | 11 | |
| β-strand | 326-331 | 6 | 15 |
| β-strand | 333 | 1 | 16 |
| β-strand | 335-337 | 3 | 22 |
| α-helix | 338 | 1 | |
| β-strand | 345-347 | 3 | 22 |
| α-helix | 352-355 | 4 | |
| β-strand | 358-362 | 5 | 15 |
| α-helix | 365-367 | 3 | |
| α-helix | 368-382 | 15 | |
| β-strand | 386 | 1 | 23 |
| α-helix | 388-400 | 13 | |
| α-helix | 403-408 | 6 | |
| α-helix | 410-419 | 10 | |
| β-strand | 425 | 1 | 23 |
| α-helix | 427-436 | 10 | |
| β-strand | 438 | 1 | 24 |
| α-helix | 442-449 | 8 | |
Chain D: 19 helices, 24 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22 | 1 | 25 |
| β-strand | 33 | 1 | 26 |
| β-strand | 39 | 1 | 26 |
| β-strand | 42-43 | 2 | 27 |
| β-strand | 46-47 | 2 | 27 |
| α-helix | 50-65 | 16 | |
| β-strand | 68 | 1 | 18 |
| β-strand | 72-76 | 5 | 24 |
| α-helix | 83-94 | 12 | |
| β-strand | 100-104 | 5 | 24 |
| α-helix | 115-124 | 10 | |
| β-strand | 128-150 | 23 | 28 |
| β-strand | 158-164 | 7 | 28 |
| β-strand | 169-174 | 6 | 28 |
| α-helix | 178-185 | 8 | |
| β-strand | 191-196 | 6 | 28 |
| β-strand | 202-207 | 6 | 28 |
| α-helix | 210-212 | 3 | |
| β-strand | 224 | 1 | 28 |
| β-strand | 233-243 | 11 | 28 |
| α-helix | 244-252 | 9 | |
| α-helix | 259-262 | 4 | |
| α-helix | 270-286 | 17 | |
| β-strand | 290-292 | 3 | 28 |
| β-strand | 295-299 | 5 | 24 |
| α-helix | 301-303 | 3 | |
| α-helix | 306-315 | 10 | |
| β-strand | 323-328 | 6 | 24 |
| β-strand | 333-334 | 2 | 29 |
| α-helix | 335 | 1 | |
| β-strand | 341-342 | 2 | 29 |
| α-helix | 343-345 | 3 | |
| α-helix | 348-351 | 4 | |
| β-strand | 354-358 | 5 | 24 |
| α-helix | 364-378 | 15 | |
| β-strand | 382 | 1 | 30 |
| α-helix | 384-396 | 13 | |
| α-helix | 399-415 | 17 | |
| β-strand | 421 | 1 | 30 |
| α-helix | 423-432 | 10 | |
| β-strand | 434 | 1 | 31 |
| α-helix | 436-443 | 8 | |
| α-helix | 444-446 | 3 | |
Chain E: 25 helices, 28 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 13-14 | 2 | |
| β-strand | 15 | 1 | 32 |
| β-strand | 26 | 1 | 33 |
| α-helix | 31 | 1 | |
| β-strand | 32 | 1 | 33 |
| α-helix | 33 | 1 | |
| β-strand | 35-36 | 2 | 34 |
| β-strand | 39-40 | 2 | 34 |
| α-helix | 43-58 | 16 | |
| β-strand | 61 | 1 | 25 |
| β-strand | 65-69 | 5 | 31 |
| α-helix | 76-87 | 12 | |
| β-strand | 93-97 | 5 | 31 |
| α-helix | 108-118 | 11 | |
| β-strand | 120-139 | 20 | 35 |
| α-helix | 141 | 1 | |
| β-strand | 142-143 | 2 | 28 |
| β-strand | 152-154 | 3 | 28 |
| β-strand | 157-162 | 6 | 35 |
| β-strand | 167-172 | 6 | 35 |
| α-helix | 175-180 | 6 | |
| β-strand | 189-194 | 6 | 35 |
| β-strand | 200-205 | 6 | 35 |
| β-strand | 206 | 1 | 36 |
| α-helix | 219-220 | 2 | |
| β-strand | 221 | 1 | 36 |
| α-helix | 222-224 | 3 | |
| β-strand | 229-236 | 8 | 35 |
| β-strand | 239 | 1 | 35 |
| α-helix | 240-248 | 9 | |
| α-helix | 256-263 | 8 | |
| α-helix | 265-266 | 2 | |
| α-helix | 273-288 | 16 | |
| β-strand | 292-296 | 5 | 35 |
| β-strand | 298-302 | 5 | 31 |
| α-helix | 304-306 | 3 | |
| α-helix | 309-319 | 11 | |
| β-strand | 326-331 | 6 | 31 |
| β-strand | 335-337 | 3 | 37 |
| α-helix | 338 | 1 | |
| β-strand | 345-347 | 3 | 37 |
| α-helix | 352-355 | 4 | |
| β-strand | 358-362 | 5 | 31 |
| α-helix | 368-382 | 15 | |
| β-strand | 386 | 1 | 38 |
| α-helix | 388-401 | 14 | |
| α-helix | 403-408 | 6 | |
| α-helix | 410-420 | 11 | |
| β-strand | 425 | 1 | 38 |
| α-helix | 427-436 | 10 | |
| β-strand | 438 | 1 | 39 |
| α-helix | 440-449 | 10 | |
| α-helix | 451-453 | 3 | |
Chain F: 19 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22 | 1 | 4 |
| β-strand | 42-43 | 2 | 40 |
| β-strand | 46-47 | 2 | 40 |
| α-helix | 50-65 | 16 | |
| β-strand | 68 | 1 | 32 |
| β-strand | 71-76 | 6 | 39 |
| α-helix | 83-94 | 12 | |
| β-strand | 100-104 | 5 | 39 |
| α-helix | 105-108 | 4 | |
| α-helix | 115-124 | 10 | |
| β-strand | 128-147 | 20 | 41 |
| β-strand | 159-164 | 6 | 41 |
| β-strand | 169-172 | 4 | 41 |
| α-helix | 176-185 | 10 | |
| β-strand | 191-195 | 5 | 41 |
| β-strand | 202-207 | 6 | 41 |
| α-helix | 209-211 | 3 | |
| β-strand | 217 | 1 | 6 |
| β-strand | 224 | 1 | 41 |
| α-helix | 226-228 | 3 | |
| β-strand | 233-243 | 11 | 41 |
| α-helix | 244-252 | 9 | |
| α-helix | 257-262 | 6 | |
| α-helix | 270-286 | 17 | |
| β-strand | 289-292 | 4 | 41 |
| β-strand | 295-299 | 5 | 39 |
| α-helix | 301-303 | 3 | |
| α-helix | 306-315 | 10 | |
| β-strand | 323-328 | 6 | 39 |
| β-strand | 332-334 | 3 | 42 |
| α-helix | 335 | 1 | |
| β-strand | 341-343 | 3 | 42 |
| α-helix | 348-351 | 4 | |
| β-strand | 356-358 | 3 | 39 |
| α-helix | 364-377 | 14 | |
| α-helix | 384-396 | 13 | |
| α-helix | 399-415 | 17 | |
| α-helix | 423-432 | 10 | |
| β-strand | 434 | 1 | 5 |
| α-helix | 436-445 | 10 | |
| β-strand | 451 | 1 | 8 |
Chain G: 39 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 520-535 | 16 | |
| α-helix | 549-559 | 11 | |
| β-strand | 570-573 | 4 | 43 |
| α-helix | 579-589 | 11 | |
| β-strand | 595 | 1 | 43 |
| α-helix | 602-612 | 11 | |
| β-strand | 626-629 | 4 | 43 |
| α-helix | 631-636 | 6 | |
| α-helix | 638-642 | 5 | |
| β-strand | 648-650 | 3 | 43 |
| α-helix | 654-656 | 3 | |
| α-helix | 663-669 | 7 | |
| β-strand | 676-677 | 2 | 43 |
| α-helix | 688-698 | 11 | |
| α-helix | 706-711 | 6 | |
| α-helix | 730-739 | 10 | |
| β-strand | 759-765 | 7 | 17 |
| α-helix | 769-779 | 11 | |
| α-helix | 810-817 | 8 | |
| β-strand | 831-833 | 3 | 44 |
| α-helix | 835-837 | 3 | |
| β-strand | 838-839 | 2 | 45 |
| α-helix | 842-847 | 6 | |
| α-helix | 850-853 | 4 | |
| α-helix | 855-863 | 9 | |
| α-helix | 869-877 | 9 | |
| α-helix | 890-893 | 4 | |
| α-helix | 898-906 | 9 | |
| α-helix | 909-932 | 24 | |
| α-helix | 959-964 | 6 | |
| α-helix | 966-971 | 6 | |
| β-strand | 980-984 | 5 | 46 |
| β-strand | 986-989 | 4 | 28 |
| β-strand | 996-998 | 3 | 28 |
| β-strand | 1002-1005 | 4 | 46 |
| α-helix | 1006-1007 | 2 | |
| α-helix | 1008-1010 | 3 | |
| β-strand | 1017-1019 | 3 | 44 |
| α-helix | 1020-1022 | 3 | |
| β-strand | 1024-1025 | 2 | 45 |
| α-helix | 1029-1038 | 10 | |
| α-helix | 1044-1052 | 9 | |
| α-helix | 1055-1063 | 9 | |
| α-helix | 1064-1066 | 3 | |
| α-helix | 1070-1073 | 4 | |
| α-helix | 1090-1092 | 3 | |
| α-helix | 1095-1099 | 5 | |
| α-helix | 1101-1116 | 16 | |
| β-strand | 1120-1124 | 5 | 17 |
| α-helix | 1127-1139 | 13 | |
| β-strand | 1145-1146 | 2 | 17 |
| α-helix | 1153-1163 | 11 | |
| β-strand | 1171-1175 | 5 | 17 |
| α-helix | 1176-1180 | 5 | |
| β-strand | 1190-1193 | 4 | 17 |
| α-helix | 1203-1210 | 8 | |
| β-strand | 1220-1226 | 7 | 17 |
| α-helix | 1231-1248 | 18 | |
Chain H: 15 helices, 20 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 33-36 | 4 | 51 |
| β-strand | 41-46 | 6 | 51 |
| β-strand | 58-62 | 5 | 51 |
| β-strand | 65 | 1 | 52 |
| β-strand | 66-67 | 2 | 53 |
| β-strand | 74-75 | 2 | 53 |
| β-strand | 95 | 1 | 52 |
| β-strand | 98-99 | 2 | 54 |
| β-strand | 102-103 | 2 | 54 |
| α-helix | 107-119 | 13 | |
| β-strand | 132 | 1 | 51 |
| α-helix | 144-156 | 13 | |
| β-strand | 160-161 | 2 | 51 |
| α-helix | 166-174 | 9 | |
| β-strand | 183-188 | 6 | 55 |
| β-strand | 193-198 | 6 | 55 |
| β-strand | 203 | 1 | 55 |
| β-strand | 209-211 | 3 | 55 |
| α-helix | 215-229 | 15 | |
| α-helix | 239-248 | 10 | |
| α-helix | 256-262 | 7 | |
| α-helix | 266-269 | 4 | |
| β-strand | 274 | 1 | 56 |
| β-strand | 444 | 1 | 56 |
| α-helix | 447-450 | 4 | |
| α-helix | 452-454 | 3 | |
| α-helix | 458-460 | 3 | |
| α-helix | 468-476 | 9 | |
| α-helix | 481-488 | 8 | |
| β-strand | 491-495 | 5 | 55 |
| α-helix | 503-514 | 12 | |
| β-strand | 523-525 | 3 | 55 |
| α-helix | 532-542 | 11 | |
| β-strand | 552-553 | 2 | 51 |
| α-helix | 556-559 | 4 | |
10 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| RuvB-like 1 | A, C, E | protein | 456 | Homo sapiens | Q9Y265 (AlphaFold model) |
| RuvB-like 2 | B, D, F | protein | 463 | Homo sapiens | Q9Y230 (AlphaFold model) |
| Chromatin-remodeling ATPase INO80 | G | protein | 1556 | Homo sapiens | Q9ULG1 (AlphaFold model) |
| Histone H4 | J, N | protein | 103 | Homo sapiens | P62805 (AlphaFold model) |
| INO80 complex subunit B | R | protein | 356 | Homo sapiens | Q9C086 |
| Actin-related protein 5 | H | protein | 607 | Homo sapiens | Q9H9F9 |
| INO80 complex subunit C | Q | protein | 192 | Homo sapiens | Q6PI98 |
| Histone H3.1 | I, M | protein | 136 | Homo sapiens | P68431 |
| Histone H2A type 1-B/E | K, O | protein | 130 | Homo sapiens | P04908 |
| Histone H2B type 1-J | L, P | protein | 126 | Homo sapiens | P06899 |
| DNA (158-mer) | X | DNA | 158 | synthetic construct | |
| DNA (158-mer) | Y | DNA | 158 | synthetic construct | |
Sequence of entity 1 (A, C, E), FASTA
>7ZI4_1 RuvB-like 1 (chains A, C, E)
MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
Sequence of entity 2 (B, D, F), FASTA
>7ZI4_2 RuvB-like 2 (chains B, D, F)
MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
Sequence of entity 3 (G), FASTA
>7ZI4_3 Chromatin-remodeling ATPase INO80 (chains G)
MASELGARDDGGCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDSNP
LLPQSGDPLIQVKEEPPNSLLGETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFSKLK
KSRKWLKSILLSDESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKEL
QQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEES
PRRHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASAR
NLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKR
AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED
SSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAA
LRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGI
LADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWG
NPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSS
SSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESH
AENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKN
KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYHI
SKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAE
MANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFP
NLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAV
PLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIR
PQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYR
KHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP
TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK
PKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRK
EGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPLDESSSDM
LVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGST
AKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPA
GLADFGPSSASSPLSSPLSKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNPSGGR
Sequence of entity 4 (J, N), FASTA
>7ZI4_4 Histone H4 (chains J, N)
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Sequence of entity 5 (R), FASTA
>7ZI4_5 INO80 complex subunit B (chains R)
MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPT
QPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYR
AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQ
RALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIE
RLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRP
SPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT
Sequence of entity 6 (H), FASTA
>7ZI4_6 Actin-related protein 5 (chains H)
MAANVFPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQ
FRAVCARGRGGARGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHL
GVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSM
CSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLS
RMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQ
QLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSY
IQKLSIAVEQAKQKILQAEVNLEVDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEET
PGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYP
KDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDW
ALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPIRLPKQASRSSDAQASSKGSAAGG
GGAGEQA
Sequence of entity 7 (Q), FASTA
>7ZI4_7 INO80 complex subunit C (chains Q)
MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS
ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW
QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG
YLALRKATSIVP
Sequence of entity 8 (I, M), FASTA
>7ZI4_8 Histone H3.1 (chains I, M)
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
MPKDIQLARRIRGERA
Sequence of entity 9 (K, O), FASTA
>7ZI4_9 Histone H2A type 1-B/E (chains K, O)
MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
TESHHKAKGK
Sequence of entity 10 (L, P), FASTA
>7ZI4_10 Histone H2B type 1-J (chains L, P)
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
KYTSAK
Sequence of entity 11 (X), FASTA
>7ZI4_11 DNA (158-MER) (chains X)
CCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTAC
GCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTC
AGATATATACATCCTGTGCATGTACTCGGGATATTGAT
Sequence of entity 12 (Y), FASTA
>7ZI4_12 DNA (158-MER) (chains Y)
ATCAATATCCCGAGTACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGG
AGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCT
AGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGG
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 8 |
| BEF | Beryllium trifluoride ion | Be F3 | 1 |
| ZN | Zinc ion | Zn | 1 |
Primary citation
Cryo-EM structure of the human INO80 complex bound to a WT nucleosome. Vance, N.R., Ayala, R., Willhoft, O. et al. To be published.
Other PDB entries of the same protein (UniProt Q9Y265 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 2C9O 2.2 Å, 3D Structure of the human RuvB-like helicase RuvBL1
- 8QR1 2.4 Å, Cryo-EM structure of the human Tip60 complex
- 9EMA 2.4 Å, RUVBL1/2 in complex with ATP and CB-6644 inhibitor
- 6K0R 2.5 Å, Ruvbl1-Ruvbl2 with truncated domain II in complex with phosphorylated Cordycepin
- 9C57 2.75 Å, Reconstituted P400 Subcomplex of the human TIP60 complex
- 2XSZ 3.0 Å, The dodecameric human RuvBL1:RuvBL2 complex with truncated domains II
- 9CAE 3.07 Å, Cryo-EM structure of the reconstituted RuvBL lobe of the human TIP60 complex (composite…
- 8X15 3.2 Å, Structure of nucleosome-bound SRCAP-C in the apo state
- 8X19 3.2 Å, Structure of nucleosome-bound SRCAP-C in the ADP-BeFx-bound state
- 8X1C 3.2 Å, Structure of nucleosome-bound SRCAP-C in the ADP-bound state
- 8XVT 3.2 Å, The core subcomplex of human NuA4/TIP60 complex
- 9SN2 3.2 Å, Cryo-EM reconstruction of the RUVBL1-RUVBL2-CCDC103 (R2C) complex
Browse structure collections
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