7ZVE: Glucose-6-phosphate 1-dehydrogenase

K403 acetylated glucose-6-phosphate dehydrogenase (G6PD). Determined by X-ray diffraction at 2.28 Å resolution. Released 23 Aug 2023.

Method
X-ray diffraction
Resolution
2.28 Å
Organism
Homo sapiens
Chains
8
Atoms
32,772
Mol. weight
459.97 kDa
Ligands
CU
Released
23 Aug 2023

Explore 7ZVE in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7ZVE contains 261 α-helices and 159 β-strands across 8 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 33 helices, 21 β-strands

ElementResiduesLengthSheet
β-strand711
α-helix9-2214
β-strand32-3762
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-7172
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-10952
α-helix115-12612
β-strand135-14062
α-helix144-1463
α-helix147-15711
β-strand165-16952
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-19832
α-helix205-21612
α-helix222-2243
β-strand230-23893
α-helix250-2523
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29313
β-strand29514
α-helix296-2983
α-helix300-3023
β-strand303-30973
α-helix316-3194
β-strand337-34373
β-strand34414
β-strand353-35973
β-strand36215
β-strand366-37383
α-helix374-3763
α-helix385-3884
β-strand389-39573
β-strand399-40793
α-helix4081
β-strand415-42173
β-strand43111
α-helix436-44510
α-helix455-47521
α-helix477-4793
β-strand480-48343
β-strand48615
α-helix490-49910
Chain B: 33 helices, 21 β-strands
ElementResiduesLengthSheet
β-strand716
α-helix9-2214
β-strand32-3767
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-7177
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-10957
α-helix115-12612
β-strand135-14067
α-helix144-1463
α-helix147-15711
β-strand165-16957
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-19837
α-helix205-21612
α-helix222-2243
β-strand230-23898
α-helix248-2514
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29212
β-strand29519
α-helix296-2983
α-helix300-3023
β-strand303-30978
α-helix316-3194
β-strand337-34268
β-strand34419
β-strand354-35968
β-strand362110
β-strand366-37388
α-helix374-3763
α-helix385-3884
β-strand389-39578
β-strand399-40798
α-helix4081
β-strand415-42178
β-strand43116
α-helix436-44510
α-helix455-47521
α-helix477-4793
β-strand480-48348
β-strand486110
α-helix490-49910
Chain C: 31 helices, 19 β-strands
ElementResiduesLengthSheet
α-helix10-2213
β-strand32-37611
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71711
α-helix77-848
α-helix85-873
α-helix92-943
α-helix95-1039
β-strand105-109511
α-helix115-12612
β-strand135-140611
α-helix144-1463
α-helix147-15711
β-strand165-169511
α-helix177-18812
α-helix193-1953
β-strand196-198311
α-helix205-21612
α-helix222-2243
β-strand230-238912
α-helix250-2523
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29212
β-strand295113
α-helix296-2983
α-helix300-3023
β-strand303-309712
α-helix316-3194
β-strand337-342612
β-strand344113
β-strand354-359612
β-strand362114
β-strand366-373812
α-helix374-3763
α-helix385-3884
β-strand389-395712
β-strand399-407912
α-helix4081
β-strand415-421712
α-helix436-44611
α-helix455-47521
α-helix477-4793
β-strand480-483412
β-strand486114
α-helix490-49910
Chain D: 33 helices, 19 β-strands
ElementResiduesLengthSheet
β-strand7115
α-helix9-2214
β-strand32-37616
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71716
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-109516
α-helix115-12612
β-strand135-140616
α-helix144-1463
α-helix147-15711
β-strand165-169516
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-198316
α-helix205-21612
α-helix222-2243
β-strand230-238917
α-helix248-2514
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29212
α-helix296-2983
α-helix300-3023
β-strand303-309717
α-helix316-3194
β-strand337-343717
β-strand353-359717
β-strand362118
β-strand366-373817
α-helix374-3763
α-helix385-3884
β-strand389-395717
β-strand399-407917
α-helix4081
β-strand415-421717
β-strand431115
α-helix436-44510
α-helix455-47521
α-helix477-4793
β-strand480-483417
β-strand486118
α-helix490-49910
Chain E: 31 helices, 20 β-strands
ElementResiduesLengthSheet
β-strand7119
α-helix9-2214
β-strand32-37620
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71720
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-109520
α-helix115-12612
β-strand135-140620
α-helix144-1463
α-helix147-15711
β-strand165-169520
α-helix177-18812
α-helix193-1953
β-strand196-198320
α-helix205-21612
α-helix222-2243
β-strand230-238921
α-helix248-2514
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29212
α-helix296-2983
α-helix300-3023
β-strand303-309721
α-helix316-3194
β-strand337-343721
β-strand353-359721
β-strand362122
β-strand366-373821
α-helix374-3763
α-helix385-3884
β-strand389-393521
β-strand399-407921
α-helix4081
β-strand415-421721
β-strand431119
α-helix436-44510
β-strand453120
α-helix455-47521
α-helix477-4793
β-strand480-483421
β-strand486122
α-helix490-49910
Chain F: 34 helices, 20 β-strands
ElementResiduesLengthSheet
α-helix10-2011
β-strand32-37623
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71723
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-109523
α-helix115-12612
β-strand135-140623
α-helix144-1463
α-helix147-15711
β-strand165-169523
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-198323
α-helix205-21612
α-helix222-2243
β-strand230-238924
α-helix250-2523
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29212
β-strand295125
α-helix296-2983
α-helix300-3023
β-strand303-309724
α-helix316-3194
β-strand337-342624
β-strand344125
β-strand354-359624
β-strand362126
β-strand366-373824
α-helix374-3763
α-helix385-3884
β-strand389-395724
β-strand399-407924
α-helix4081
β-strand415-421724
α-helix432-4343
α-helix436-44611
β-strand453123
α-helix455-47521
α-helix477-4793
β-strand480-483424
β-strand486126
α-helix490-49910
Chain G: 33 helices, 18 β-strands
ElementResiduesLengthSheet
α-helix9-2214
β-strand32-37627
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71727
α-helix77-848
α-helix85-873
α-helix92-943
α-helix95-1039
β-strand105-109527
α-helix115-12612
β-strand135-140627
α-helix144-1463
α-helix147-15711
β-strand165-169527
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-198327
α-helix205-21612
α-helix222-2243
β-strand230-238928
α-helix248-2514
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29313
β-strand295129
α-helix296-2983
α-helix300-3023
β-strand303-309728
α-helix316-3194
β-strand337-342628
β-strand344129
β-strand354-359628
β-strand366-373828
α-helix374-3763
α-helix385-3884
β-strand389-395728
β-strand399-407928
α-helix4081
β-strand415-421728
α-helix436-44510
β-strand453127
α-helix455-47521
α-helix477-4793
β-strand480-483428
α-helix490-49910
Chain H: 33 helices, 21 β-strands
ElementResiduesLengthSheet
β-strand7130
α-helix9-2214
β-strand32-37631
α-helix42-432
α-helix44-485
α-helix49-5810
β-strand65-71731
α-helix77-848
α-helix85-884
α-helix92-943
α-helix95-1039
β-strand105-109531
α-helix115-12612
β-strand135-140631
α-helix144-1463
α-helix147-15711
β-strand165-169531
α-helix1701
α-helix1721
α-helix177-18812
α-helix193-1953
β-strand196-198331
α-helix205-21612
α-helix222-2243
β-strand230-238932
α-helix248-2514
α-helix254-2552
α-helix256-2649
α-helix265-2728
α-helix273-2764
α-helix281-29313
β-strand295133
α-helix296-2983
α-helix300-3023
β-strand303-309732
α-helix316-3194
β-strand337-342632
β-strand344133
β-strand354-359632
β-strand362134
β-strand366-373832
α-helix374-3763
α-helix385-3884
β-strand389-395732
β-strand399-407932
α-helix4081
β-strand415-421732
β-strand431130
α-helix436-44510
α-helix455-47521
α-helix477-4793
β-strand480-483432
β-strand486134
α-helix490-49910

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Glucose-6-phosphate 1-dehydrogenaseAprotein501Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseBprotein498Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseCprotein497Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseD, Hprotein499Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseEprotein500Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseFprotein497Homo sapiensP11413 (AlphaFold model)
Glucose-6-phosphate 1-dehydrogenaseGprotein496Homo sapiensP11413 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>7ZVE_1 Glucose-6-phosphate 1-dehydrogenase (chains A)
VALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPEN
TFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSH
MNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLS
NHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTE
GRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVV
LGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNE
RKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTY
GNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIY
GSRGPTEADELMKRVGFQYEG
Sequence of entity 2 (B), FASTA
>7ZVE_2 Glucose-6-phosphate 1-dehydrogenase (chains B)
ALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENT
FIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHM
NALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSN
HISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEG
RGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVL
GQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNER
KAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYG
NRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYG
SRGPTEADELMKRVGFQY
Sequence of entity 3 (C), FASTA
>7ZVE_3 Glucose-6-phosphate 1-dehydrogenase (chains C)
LSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTF
IVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMN
ALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNH
ISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGR
GGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLG
QYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERK
AEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGN
RYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGS
RGPTEADELMKRVGFQY
Sequence of entity 4 (D, H), FASTA
>7ZVE_4 Glucose-6-phosphate 1-dehydrogenase (chains D, H)
VALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPEN
TFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSH
MNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLS
NHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTE
GRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVV
LGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNE
RKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTY
GNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIY
GSRGPTEADELMKRVGFQY
Sequence of entity 5 (E), FASTA
>7ZVE_5 Glucose-6-phosphate 1-dehydrogenase (chains E)
VALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPEN
TFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSH
MNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLS
NHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTE
GRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVV
LGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNE
RKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTY
GNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIY
GSRGPTEADELMKRVGFQYE
Sequence of entity 6 (F), FASTA
>7ZVE_6 Glucose-6-phosphate 1-dehydrogenase (chains F)
LSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTF
IVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMN
ALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNH
ISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGR
GGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLG
QYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERK
AEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGN
RYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGS
RGPTEADELMKRVGFQY
Sequence of entity 7 (G), FASTA
>7ZVE_7 Glucose-6-phosphate 1-dehydrogenase (chains G)
SRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFI
VGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNA
LHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHI
SSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRG
GYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQ
YVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKA
EVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNR
YKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSR
GPTEADELMKRVGFQY

Ligands and cofactors

IDNameFormulaCopies
CUCopper (II) ionCu1

Water and common crystallization additives (GOL) are not listed.

Primary citation

Acetylation-dependent coupling between G6PD activity and apoptotic signaling. Wu, F., Muskat, N.H., Dvilansky, I. et al. Nat Commun (2023) 14:6208-6208. DOI 10.1038/s41467-023-41895-2 · PubMed

Other PDB entries of the same protein (UniProt P11413 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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