Plasmodium falciparum Myosin A full-length, post-rigor state complexed to the inhibitor KNX-002. Determined by X-ray diffraction at 2.35 Å resolution. Released 21 Feb 2024.
Explore 8CDM in 3D Show helices and sheets RCSB PDB PDBe
8CDM contains 62 α-helices and 38 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 5-14 | 10 | |
| β-strand | 24 | 1 | 1 |
| α-helix | 29 | 1 | |
| β-strand | 30 | 1 | 1 |
| α-helix | 31 | 1 | |
| β-strand | 35-38 | 4 | 2 |
| α-helix | 42-46 | 5 | |
| β-strand | 53-57 | 5 | 2 |
| α-helix | 58 | 1 | |
| β-strand | 66-72 | 7 | 2 |
| β-strand | 80-82 | 3 | 2 |
| α-helix | 84-86 | 3 | |
| β-strand | 87-88 | 2 | 2 |
| α-helix | 96-98 | 3 | |
| β-strand | 101 | 1 | 3 |
| α-helix | 102-104 | 3 | |
| α-helix | 110-122 | 13 | |
| β-strand | 127-130 | 4 | 3 |
| β-strand | 133-137 | 5 | 3 |
| α-helix | 148-156 | 9 | |
| α-helix | 160-162 | 3 | |
| α-helix | 167-181 | 15 | |
| β-strand | 185-191 | 7 | 3 |
| α-helix | 197-208 | 12 | |
| α-helix | 218-235 | 18 | |
| β-strand | 236-237 | 2 | 4 |
| β-strand | 245-246 | 2 | 4 |
| β-strand | 249-256 | 8 | 3 |
| β-strand | 262-270 | 9 | 3 |
| α-helix | 275-278 | 4 | |
| β-strand | 287 | 1 | 4 |
| α-helix | 288-296 | 9 | |
| α-helix | 299-305 | 7 | |
| α-helix | 310-312 | 3 | |
| α-helix | 318-320 | 3 | |
| α-helix | 328-341 | 14 | |
| α-helix | 346-363 | 18 | |
| β-strand | 367-369 | 3 | 5 |
| β-strand | 379-381 | 3 | 5 |
| α-helix | 383-385 | 3 | |
| α-helix | 386-395 | 10 | |
| α-helix | 400-408 | 9 | |
| β-strand | 409-414 | 6 | 6 |
| β-strand | 417-422 | 6 | 6 |
| α-helix | 425-455 | 31 | |
| β-strand | 465-471 | 7 | 3 |
| β-strand | 479 | 1 | 7 |
| α-helix | 481-511 | 31 | |
| α-helix | 525-532 | 8 | |
| α-helix | 538-547 | 10 | |
| α-helix | 553-563 | 11 | |
| β-strand | 570-572 | 3 | 7 |
| β-strand | 580-585 | 6 | 7 |
| β-strand | 588-593 | 6 | 7 |
| α-helix | 597-601 | 5 | |
| α-helix | 608-614 | 7 | |
| α-helix | 619-624 | 6 | |
| α-helix | 628-630 | 3 | |
| α-helix | 637-639 | 3 | |
| α-helix | 641-657 | 17 | |
| β-strand | 660-667 | 8 | 3 |
| α-helix | 680-689 | 10 | |
| α-helix | 692-700 | 9 | |
| β-strand | 705-708 | 4 | 8 |
| α-helix | 709-715 | 7 | |
| α-helix | 717-719 | 3 | |
| α-helix | 721-724 | 4 | |
| α-helix | 731-742 | 12 | |
| α-helix | 746-748 | 3 | |
| β-strand | 749-751 | 3 | 8 |
| β-strand | 755-758 | 4 | 8 |
| α-helix | 760-773 | 14 | |
| α-helix | 775-777 | 3 | |
| α-helix | 778-817 | 40 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 29-38 | 10 | |
| β-strand | 40 | 1 | 9 |
| β-strand | 43-45 | 3 | 9 |
| α-helix | 46-55 | 10 | |
| α-helix | 62-72 | 11 | |
| β-strand | 75-77 | 3 | 9 |
| α-helix | 78-87 | 10 | |
| α-helix | 95-98 | 4 | |
| α-helix | 100-105 | 6 | |
| β-strand | 112-114 | 3 | 10 |
| α-helix | 115-122 | 8 | |
| α-helix | 128-130 | 3 | |
| α-helix | 131-141 | 11 | |
| β-strand | 146-148 | 3 | 10 |
| α-helix | 149-156 | 8 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 6-17 | 12 | |
| β-strand | 22 | 1 | 11 |
| α-helix | 25-33 | 9 | |
| α-helix | 41-45 | 5 | |
| β-strand | 52 | 1 | 11 |
| α-helix | 53-63 | 11 | |
| β-strand | 84-86 | 3 | 12 |
| α-helix | 87-96 | 10 | |
| α-helix | 103-113 | 11 | |
| β-strand | 120-122 | 3 | 12 |
| α-helix | 123-132 | 10 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Myosin-A | A | protein | 818 | Plasmodium falciparum | Q8IDR3 (AlphaFold model) |
| Myosin A tail domain interacting protein | B | protein | 204 | Plasmodium falciparum | Q8I4W8 (AlphaFold model) |
| Myosin essential light chain ELC | E | protein | 134 | Plasmodium falciparum | Q8IJM4 (AlphaFold model) |
>8CDM_1 Myosin-A (chains A) MAVTNEEIKTASKIVRRVSNVEAFDKSGSVFKGYQIWTDISPTIENDPNIMFVKCVVQQG SKKEKLTVVQIDPPGTGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFLKHR YLKNQIYTTAVPLIVAINPYKDLGNTTNEWIRRYRDTADHTKLPPHVFTCAREALSNLHG VNKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLRIQTAIMAANPVLEAFGNAKTI RNNNSSRFGRFMQLVISHEGGIRYGSVVAFLLEKSRIITQDDNERSYHIFYQFLKGANST MKSKFGLKGVTEYKLLNPNSTEVSGVDDVKDFEEVIESLKNMELSESDIEVIFSIVAGIL TLGNVRLIEKQEAGLSDAAAIMDEDMGVFNKACELMYLDPELIKREILIKVTVAGGTKIE GRWNKNDAEVLKSSLCKAMYEKLFLWIIRHLNSRIEPEGGFKTFMGMLDIFGFEVFKNNS LEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTAELKYTSNKEVINVLCEKGKSVLS YLEDQCLAPGGTDEKFVSSCATNLKENNKFTPAKVASNKNFIIQHTIGPIQYCAESFLLK NKDVLRGDLVEVIKDSPNPIVQQLFEGQVIEKGKIAKGSLIGSQFLNQLTSLMNLINSTE PHFIRCIKPNENKKPLEWCEPKILIQLHALSILEALVLRQLGYSYRRTFEEFLYQYKFVD IAAAEDSSVENQNKCVNILKLSGLSESMYKIGKSMVFLKQEGAKILTKIQREKLVEWENC VSVIEAAILKHKYKQKVNKNIPSLLRVQAHIRKKMVAQ
>8CDM_2 Myosin A tail domain interacting protein (chains B) MKQECNVCYFNLPDPESTLGPYDNELNYFTWGPGFEYEPEPQRKPLSIEESFENSEESEE SVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGD NLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEA IDALNAFSSEDNIDYKLFCEDILQ
>8CDM_3 Myosin essential light chain ELC (chains E) MASDMEEKFREAFILFSSCSDHIEMYKFFELMNSFGIILTNDEKAALPNDINMDYWLNFA KKHYNYEQPFKHINNVNEQNTNVQIKIDNFLGIMKALDTRLTESDLNILLQITNPENKST LNLKTVSQKLTESI
| ID | Name | Formula | Copies |
|---|---|---|---|
| KQ0 | 1-(4-methoxyphenyl)-~{N}-[(3-thiophen-2-yl-1~{H}-pyrazol-4-yl)methyl]cyclopropa… | C18 H19 N3 O S | 1 |
Water and common crystallization additives (EDO, PG4) are not listed.
Mechanism of small molecule inhibition of Plasmodium falciparum myosin A informs antimalarial drug design. Moussaoui, D., Robblee, J.P., Robert-Paganin, J. et al. Nat Commun (2023) 14:3463-3463. DOI 10.1038/s41467-023-38976-7 · PubMed
Other PDB entries of the same protein (UniProt Q8IDR3 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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