8JFK: PhK holoenzyme in inactive state, muscle isoform

PhK holoenzyme in inactive state, muscle isoform. Determined by electron microscopy at 2.9 Å resolution. Released 3 Apr 2024.

Method
Electron microscopy
Resolution
2.9 Å
Organism
Homo sapiens
Chains
16
Atoms
81,428
Mol. weight
1299.41 kDa
Ligands
FAR
Released
3 Apr 2024

Explore 8JFK in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8JFK contains 578 α-helices and 373 β-strands across 16 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 57 helices, 39 β-strands

ElementResiduesLengthSheet
α-helix3-53
α-helix6-2116
α-helix23-253
β-strand41-43331
α-helix44-507
α-helix52-6312
α-helix68-9326
α-helix96-1049
α-helix112-1132
β-strand115-117331
β-strand122131
α-helix137-15014
α-helix159-17315
β-strand180132
β-strand196132
α-helix199-21113
β-strand215-216233
α-helix224-2263
β-strand227-228233
α-helix2291
α-helix232-24514
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand288134
β-strand293-294234
α-helix316-3216
α-helix325-3262
β-strand327-328234
α-helix330-34213
α-helix345-35511
α-helix3591
β-strand360-362335
β-strand366-368335
β-strand372-374334
α-helix377-3793
α-helix380-3856
β-strand393-395334
α-helix401-41414
α-helix420-4234
α-helix428-4314
α-helix436-4394
β-strand440-446736
α-helix449-4579
β-strand463-464236
β-strand472-474337
α-helix476-4827
α-helix483-4853
β-strand489138
β-strand494138
α-helix504-5074
β-strand510-513437
β-strand516-520537
α-helix523-5253
α-helix531-5344
α-helix536-55318
β-strand561-566636
α-helix568-5703
β-strand571139
β-strand578139
α-helix580-59112
β-strand593140
β-strand598140
β-strand599-601336
β-strand613-615337
α-helix617-6193
α-helix660-6689
α-helix780-7889
α-helix811-82010
α-helix823-83210
α-helix840-8489
β-strand853-856441
β-strand865-867341
α-helix873-88412
α-helix888-90720
α-helix909-9124
β-strand917-919341
α-helix920-93314
α-helix939-94810
α-helix951-96313
α-helix1053-10586
α-helix1071-10799
β-strand1084-1086342
β-strand1093142
α-helix1094-10996
α-helix1105-111511
α-helix1122-114019
β-strand1141143
β-strand1148-1150342
α-helix1151-116919
β-strand1178144
β-strand1185144
α-helix1186-11905
β-strand1194145
α-helix1199-121416
β-strand1220143
Chain B: 55 helices, 38 β-strands
ElementResiduesLengthSheet
α-helix45-5511
α-helix56-605
α-helix61-633
β-strand81-8331
α-helix84-10118
α-helix110-13021
α-helix133-1419
α-helix149-1502
β-strand152-15431
α-helix172-18716
α-helix196-21015
α-helix212-2143
β-strand21712
β-strand23312
α-helix236-24914
β-strand252-25323
α-helix261-2633
β-strand264-26523
α-helix269-28214
β-strand29314
α-helix296-3005
α-helix310-32415
β-strand32515
β-strand33015
β-strand33314
α-helix354-3585
β-strand36416
β-strand36515
α-helix367-37913
α-helix382-39514
β-strand397-39827
β-strand404-40527
β-strand410-41126
α-helix417-4226
β-strand430-43126
α-helix442-45514
β-strand494-49748
β-strand499-50139
β-strand503110
α-helix504-5118
β-strand527-529311
α-helix531-5388
β-strand544112
β-strand549112
α-helix559-5635
β-strand566-568311
β-strand571-575511
α-helix578-5803
α-helix591-60818
α-helix614-6152
β-strand61618
β-strand619-62139
α-helix623-6264
α-helix628-6303
α-helix631-64313
β-strand645-64628
β-strand649-65358
α-helix658-6603
β-strand666-667211
α-helix670-6734
α-helix680-6823
β-strand688110
α-helix716-7205
α-helix727-7337
α-helix737-75014
β-strand756113
β-strand761113
α-helix762-77615
α-helix779-78810
α-helix796-80510
β-strand809-812414
β-strand820-822314
α-helix828-8336
α-helix834-8385
α-helix845-86319
α-helix865-8684
β-strand873-875314
α-helix876-89116
α-helix896-8983
α-helix904-91512
α-helix924-93310
α-helix937-9382
α-helix941-95010
β-strand956-957215
β-strand963115
α-helix965-9717
α-helix978-9869
α-helix993-101220
β-strand1022-1023215
α-helix1024-104219
α-helix1052-10565
α-helix1065-107713
α-helix1083-10853
Chains C and G: 22 helices, 14 β-strands
ElementResiduesLengthSheet
α-helix13-175
β-strand20-278118
β-strand32-398118
β-strand44-529118
α-helix55-573
α-helix61-8020
β-strand871119
β-strand92-954118
β-strand99-1057118
β-strand1111119
α-helix112-1187
α-helix124-14320
β-strand1471120
α-helix153-1553
β-strand156-1583119
β-strand164-1663119
β-strand1731120
α-helix174-1763
β-strand1811121
α-helix188-1903
α-helix193-2008
β-strand2071121
α-helix211-22515
α-helix235-24410
α-helix253-2553
α-helix259-26911
α-helix273-2753
α-helix279-2824
α-helix286-2883
α-helix301-32424
α-helix325-3284
α-helix330-3356
α-helix341-35414
α-helix367-3704
β-strand371145
α-helix376-3794
Chains D, H, L and P: 8 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix7-2014
β-strand28-292117
α-helix30-3910
α-helix46-5712
β-strand63-642117
α-helix66-738
α-helix79-9315
α-helix103-11311
α-helix119-12911
α-helix139-1479
Chain E: 54 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix3-53
α-helix6-2116
α-helix23-253
β-strand42-432102
α-helix44-507
α-helix52-6312
α-helix68-9326
α-helix96-1049
α-helix108-1103
α-helix112-1132
β-strand115-1162102
α-helix137-15014
α-helix159-17315
α-helix174-1763
β-strand1801103
β-strand1961103
α-helix199-21113
β-strand215-2162104
α-helix224-2263
β-strand227-2282104
α-helix232-24514
β-strand2561105
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand2881106
β-strand293-2942106
β-strand2961105
α-helix315-3217
α-helix325-3262
β-strand327-3282106
α-helix330-34213
α-helix345-35612
β-strand360-3623107
β-strand366-3683107
β-strand372-3743106
α-helix380-3856
β-strand393-3953106
α-helix401-41414
α-helix420-4234
α-helix428-4303
β-strand439-4468108
α-helix449-4579
β-strand463-4642108
β-strand472-4754109
α-helix476-4827
β-strand4891110
β-strand4941110
α-helix504-5085
β-strand510-5134109
β-strand516-5216109
α-helix5221
α-helix523-5253
α-helix531-5344
α-helix536-55217
β-strand561-5666108
α-helix568-5703
β-strand5711111
β-strand5781111
α-helix580-59112
β-strand593-5942108
β-strand597-6015108
β-strand614-6152109
α-helix660-6689
α-helix780-7889
α-helix811-82010
α-helix823-83210
α-helix840-84910
β-strand853-8564112
β-strand865-8673112
α-helix873-88412
α-helix888-90720
α-helix909-9124
β-strand917-9193112
α-helix920-93314
α-helix939-9468
α-helix951-96313
α-helix1053-10586
α-helix1071-10799
β-strand1084-10863113
β-strand10931113
α-helix1094-10996
α-helix1105-111511
α-helix1122-114019
β-strand11411114
β-strand1148-11503113
α-helix1151-116919
β-strand11781115
β-strand11851115
α-helix1186-11905
β-strand11941116
α-helix1199-121416
β-strand12201114
Chain F: 59 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix45-5511
α-helix56-616
β-strand81-83388
α-helix84-10017
α-helix101-1033
α-helix110-13021
α-helix133-1419
α-helix149-1502
β-strand152-154388
β-strand160188
α-helix172-18716
α-helix196-20914
β-strand217189
β-strand233189
α-helix236-24914
β-strand253190
α-helix261-2633
β-strand264190
α-helix265-2662
α-helix269-28214
β-strand293191
α-helix294-2963
α-helix297-3004
α-helix310-32415
β-strand325192
β-strand330-331292
β-strand333191
α-helix352-3587
α-helix362-3632
β-strand364-365292
α-helix367-37812
α-helix383-39513
β-strand397-398293
β-strand404-405293
β-strand410-411292
α-helix414-4163
α-helix417-4226
β-strand430-431292
α-helix442-45615
α-helix461-4644
β-strand478194
β-strand483194
β-strand494-501895
α-helix504-5129
β-strand518195
β-strand526-529496
α-helix531-5399
β-strand544197
β-strand549197
α-helix559-5635
β-strand565-568496
β-strand571-575596
α-helix576-5772
α-helix578-5803
α-helix591-60818
α-helix614-6152
β-strand616-621695
α-helix623-6264
α-helix628-6303
α-helix631-64313
β-strand645-646295
β-strand649-653595
α-helix658-6603
α-helix6651
β-strand666-668396
α-helix670-6734
α-helix716-7205
α-helix727-7337
α-helix737-75014
β-strand756198
β-strand761198
α-helix762-77615
α-helix781-7877
α-helix796-80510
β-strand809-811399
β-strand821-822299
α-helix828-8336
α-helix834-8385
α-helix845-86319
α-helix865-8684
β-strand873-875399
α-helix876-89116
α-helix896-8983
α-helix904-91512
α-helix924-93411
α-helix941-95010
β-strand956-9572100
β-strand962-9632100
α-helix968-9714
α-helix977-98711
α-helix993-101220
β-strand10161101
β-strand1022-10232100
α-helix1024-104219
α-helix1052-10554
α-helix1065-107814
β-strand10821101
α-helix1083-10853
Chain I: 57 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix3-53
α-helix6-2116
α-helix23-253
β-strand41-43373
α-helix44-507
α-helix52-6211
α-helix68-9326
α-helix96-1049
α-helix108-1103
α-helix112-1132
β-strand115-117373
α-helix135-15117
α-helix159-17315
α-helix174-1774
β-strand180174
β-strand196174
α-helix199-21113
β-strand215-216275
α-helix224-2263
β-strand227-228275
α-helix232-24514
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand288176
β-strand293-294276
α-helix315-3217
β-strand327-328276
α-helix330-34213
α-helix345-35612
β-strand360-362377
β-strand366-368377
β-strand372-374376
α-helix375-3762
α-helix380-3856
β-strand393-395376
α-helix401-41414
α-helix420-4234
α-helix428-4325
α-helix436-4383
β-strand439-446878
α-helix449-4579
β-strand463-464278
β-strand472-474379
α-helix476-4827
α-helix483-4853
β-strand488-489280
β-strand494-495280
α-helix504-5074
β-strand510-513479
β-strand516-520579
α-helix523-5253
α-helix536-55318
β-strand559181
β-strand561-566678
α-helix5671
α-helix568-5703
β-strand571182
β-strand578182
α-helix580-59011
β-strand593-594278
β-strand597-602678
α-helix606-6083
β-strand611181
β-strand613-615379
α-helix617-6193
α-helix660-6689
α-helix780-7889
α-helix810-82011
α-helix823-83210
α-helix840-84910
β-strand853-856483
β-strand865-867383
α-helix873-88412
α-helix888-90720
α-helix909-9124
β-strand917-919383
α-helix920-93314
α-helix939-9468
α-helix951-96313
α-helix1055-10584
α-helix1071-10799
β-strand1084-1087484
β-strand1090-1093484
α-helix1095-10995
α-helix1105-111511
α-helix1121-114020
β-strand1141185
β-strand1148-1150384
α-helix1151-116919
β-strand1178186
β-strand1185186
α-helix1186-11905
β-strand1194187
α-helix1199-121416
β-strand1220185
Chain J: 58 helices, 40 β-strands
ElementResiduesLengthSheet
α-helix45-5915
α-helix61-633
β-strand72159
β-strand81-83359
α-helix84-10118
α-helix110-13021
α-helix133-1419
α-helix145-1473
α-helix149-1502
β-strand152-154359
β-strand160159
α-helix172-18817
α-helix196-21015
α-helix211-2144
β-strand217160
β-strand233160
α-helix236-24914
β-strand252-253261
α-helix261-2633
β-strand264-265261
α-helix2661
α-helix269-28214
α-helix296-3005
α-helix310-32415
β-strand325162
β-strand330-331262
α-helix355-3584
α-helix362-3632
β-strand364-365262
α-helix367-37913
α-helix382-39514
β-strand397-398263
β-strand404-405263
β-strand410-411262
α-helix417-4226
β-strand430-431262
α-helix442-45514
β-strand478164
β-strand483164
β-strand494-501865
β-strand503166
α-helix504-5118
β-strand518165
α-helix520-5223
β-strand527-529367
α-helix531-5388
β-strand544168
β-strand549168
α-helix559-5624
β-strand565-568467
β-strand571-575567
α-helix576-5772
α-helix578-5803
α-helix587-5893
α-helix591-60818
α-helix614-6152
β-strand616-621665
α-helix628-6303
α-helix631-64313
β-strand645-646265
β-strand649-653565
α-helix658-6603
α-helix6641
β-strand665-667367
α-helix670-6734
β-strand688166
α-helix716-7205
α-helix727-7337
α-helix737-75014
β-strand756169
β-strand761169
α-helix762-77615
α-helix779-78810
α-helix796-80510
β-strand810-812370
β-strand820-822370
α-helix828-8336
α-helix834-8385
α-helix844-86320
α-helix865-8673
β-strand874-875270
α-helix876-89116
α-helix896-8983
α-helix904-91411
α-helix924-93411
α-helix937-9382
α-helix941-95111
β-strand956-958371
β-strand961-963371
α-helix968-9714
α-helix977-98610
α-helix993-101220
β-strand1016172
β-strand1022-1023271
α-helix1024-104320
α-helix1051-10566
α-helix1065-107713
β-strand1082172

3 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Phosphorylase b kinase regulatory subunit betaB, F, J, Nprotein1093Homo sapiensQ93100 (AlphaFold model)
Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoformA, E, I, Mprotein1223Homo sapiensP46020 (AlphaFold model)
Calmodulin-1D, H, L, Pprotein149Homo sapiensP0DP23 (AlphaFold model)
Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoformC, G, K, Oprotein387Homo sapiensQ16816 (AlphaFold model)
Sequence of entity 1 (B, F, J, N), FASTA
>8JFK_1 Phosphorylase b kinase regulatory subunit beta (chains B, F, J, N)
MAGAAGLTAEVSWKVLERRARTKRSGSVYEPLKSINLPRPDNETLWDKLDHYYRIVKSTL
LLYQSPTTGLFPTKTCGGDQKAKIQDSLYCAAGAWALALAYRRIDDDKGRTHELEHSAIK
CMRGILYCYMRQADKVQQFKQDPRPTTCLHSVFNVHTGDELLSYEEYGHLQINAVSLYLL
YLVEMISSGLQIIYNTDEVSFIQNLVFCVERVYRVPDFGVWERGSKYNNGSTELHSSSVG
LAKAALEAINGFNLFGNQGCSWSVIFVDLDAHNRNRQTLCSLLPRESRSHNTDAALLPCI
SYPAFALDDEVLFSQTLDKVVRKLKGKYGFKRFLRDGYRTSLEDPNRCYYKPAEIKLFDG
IECEFPIFFLYMMIDGVFRGNPKQVQEYQDLLTPVLHHTTEGYPVVPKYYYVPADFVEYE
KNNPGSQKRFPSNCGRDGKLFLWGQALYIIAKLLADELISPKDIDPVQRYVPLKDQRNVS
MRFSNQGPLENDLVVHVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWPQQELVKAYLQ
LGINEKLGLSGRPDRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVFLLIDDIKN
ALQFIKQYWKMHGRPLFLVLIREDNIRGSRFNPILDMLAALKKGIIGGVKVHVDRLQTLI
SGAVVEQLDFLRISDTEELPEFKSFEELEPPKHSKVKRQSSTPSAPELGQQPDVNISEWK
DKPTHEILQKLNDCSCLASQAILLGILLKREGPNFITKEGTVSDHIERVYRRAGSQKLWL
AVRYGAAFTQKFSSSIAPHITTFLVHGKQVTLGAFGHEEEVISNPLSPRVIQNIIYYKCN
THDEREAVIQQELVIHIGWIISNNPELFSGMLKIRIGWIIHAMEYELQIRGGDKPALDLY
QLSPSEVKQLLLDILQPQQNGRCWLNRRQIDGSLNRTPTGFYDRVWQILERTPNGIIVAG
KHLPQQPTLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELLMVVSIVLERNPELEFQD
KVDLDRLVKEAFNEFQKDQSRLKEIEKQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLLEG
EVKPNNDDPCLIS
Sequence of entity 2 (A, E, I, M), FASTA
>8JFK_2 Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform (chains A, E, I, M)
MRSRSNSGVRLDGYARLVQQTILCHQNPVTGLLPASYDQKDAWVRDNVYSILAVWGLGLA
YRKNADRDEDKAKAYELEQSVVKLMRGLLHCMIRQVDKVESFKYSQSTKDSLHAKYNTKT
CATVVGDDQWGHLQLDATSVYLLFLAQMTASGLHIIHSLDEVNFIQNLVFYIEAAYKTAD
FGIWERGDKTNQGISELNASSVGMAKAALEALDELDLFGVKGGPQSVIHVLADEVQHCQS
ILNSLLPRASTSKEVDASLLSVVSFPAFAVEDSQLVELTKQEIITKLQGRYGCCRFLRDG
YKTPKEDPNRLYYEPAELKLFENIECEWPLFWTYFILDGVFSGNAEQVQEYKEALEAVLI
KGKNGVPLLPELYSVPPDRVDEEYQNPHTVDRVPMGKLPHMWGQSLYILGSLMAEGFLAP
GEIDPLNRRFSTVPKPDVVVQVSILAETEEIKTILKDKGIYVETIAEVYPIRVQPARILS
HIYSSLGCNNRMKLSGRPYRHMGVLGTSKLYDIRKTIFTFTPQFIDQQQFYLALDNKMIV
EMLRTDLSYLCSRWRMTGQPTITFPISHSMLDEDGTSLNSSILAALRKMQDGYFGGARVQ
TGKLSEFLTTSCCTHLSFMDPGPEGKLYSEDYDDNYDYLESGNWMNDYDSTSHARCGDEV
ARYLDHLLAHTAPHPKLAPTSQKGGLDRFQAAVQTTCDLMSLVTKAKELHVQNVHMYLPT
KLFQASRPSFNLLDSPHPRQENQVPSVRVEIHLPRDQSGEVDFKALVLQLKETSSLQEQA
DILYMLYTMKGPDWNTELYNERSATVRELLTELYGKVGEIRHWGLIRYISGILRKKVEAL
DEACTDLLSHQKHLTVGLPPEPREKTISAPLPYEALTQLIDEASEGDMSISILTQEIMVY
LAMYMRTQPGLFAEMFRLRIGLIIQVMATELAHSLRCSAEEATEGLMNLSPSAMKNLLHH
ILSGKEFGVERSVRPTDSNVSPAISIHEIGAVGATKTERTGIMQLKSEIKQVEFRRLSIS
AESQSPGTSMTPSSGSFPSAYDQQSSKDSRQGQWQRRRRLDGALNRVPVGFYQKVWKVLQ
KCHGLSVEGFVLPSSTTREMTPGEIKFSVHVESVLNRVPQPEYRQLLVEAILVLTMLADI
EIHSIGSIIAVEKIVHIANDLFLQEQKTLGADDTMLAKDPASGICTLLYDSAPSGRFGTM
TYLSKAAATYVQEFLPHSICAMQ
Sequence of entity 3 (D, H, L, P), FASTA
>8JFK_3 Calmodulin-1 (chains D, H, L, P)
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
EVDEMIREADIDGDGQVNYEEFVQMMTAK
Sequence of entity 4 (C, G, K, O), FASTA
>8JFK_4 Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform (chains C, G, K, O)
MTRDEALPDSHSAQDFYENYEPKEILGRGVSSVVRRCIHKPTSQEYAVKVIDVTGGGSFS
PEEVRELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKV
TLSEKETRKIMRALLEVICTLHKLNIVHRDLKPENILLDDNMNIKLTDFGFSCQLEPGER
LREVCGTPSYLAPEIIECSMNEDHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR
MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQNRYTAEEALAHPFFQQYLVEEVRHFS
PRGKFKVIALTVLASVRIYYQYRRVKPVTREIVIRDPYALRPLRRLIDAYAFRIYGHWVK
KGQQQNRAALFENTPKAVLLSLAEEDY

Ligands and cofactors

IDNameFormulaCopies
FARFarnesylC15 H268

Primary citation

Architecture and activation of human muscle phosphorylase kinase. Yang, X., Zhu, M., Lu, X. et al. Nat Commun (2024) 15:2719-2719. DOI 10.1038/s41467-024-47049-2 · PubMed

Other PDB entries of the same protein (UniProt Q93100 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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