8JFL: PhK holoenzyme in active state, muscle isoform

PhK holoenzyme in active state, muscle isoform. Determined by electron microscopy at 2.9 Å resolution. Released 3 Apr 2024.

Method
Electron microscopy
Resolution
2.9 Å
Organism
Homo sapiens
Chains
12
Atoms
65,884
Mol. weight
1233.71 kDa
Ligands
ADP, FAR
Released
3 Apr 2024

Explore 8JFL in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8JFL contains 465 α-helices and 324 β-strands across 12 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 55 helices, 40 β-strands

ElementResiduesLengthSheet
α-helix8-2114
α-helix23-253
β-strand42-4321
α-helix44-507
α-helix52-6211
α-helix68-9326
α-helix96-1049
α-helix108-1103
α-helix112-1132
β-strand115-11621
α-helix127-1293
α-helix135-14915
α-helix159-17113
β-strand18012
β-strand19612
α-helix199-21113
α-helix232-24514
β-strand25013
β-strand25313
β-strand25614
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand288-28925
β-strand292-29435
β-strand29614
α-helix325-3262
β-strand327-32825
α-helix330-3378
β-strand372-37435
α-helix377-3793
α-helix380-3856
α-helix3921
β-strand393-39535
α-helix401-41414
α-helix420-4234
α-helix428-4303
α-helix434-4385
β-strand440-44676
α-helix449-4579
β-strand463-46426
β-strand472-47437
α-helix476-4838
β-strand48918
β-strand49418
α-helix506-5083
β-strand511-51337
β-strand516-52057
α-helix523-5264
α-helix531-5333
α-helix536-55318
β-strand55919
β-strand561-56666
α-helix568-5703
β-strand571110
β-strand578110
α-helix580-59011
β-strand593-594211
β-strand597-598211
β-strand599-60136
α-helix606-6083
β-strand61119
β-strand614-61527
α-helix617-6193
α-helix767-7704
α-helix782-7887
α-helix789-7935
β-strand799112
β-strand805112
α-helix806-82015
α-helix823-83210
α-helix840-84910
β-strand853-855313
β-strand866-867213
α-helix873-88311
α-helix891-90717
α-helix909-9124
β-strand915114
β-strand917-919313
α-helix920-93314
α-helix939-9457
α-helix951-96313
α-helix1053-106311
β-strand1066114
α-helix1071-108111
β-strand1084-1087415
β-strand1090-1093415
α-helix1094-10963
α-helix1107-11148
α-helix1121-114020
β-strand1149-1150215
α-helix1151-116919
α-helix1186-11905
β-strand1194116
α-helix1199-12079
Chain B: 57 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix45-5915
α-helix70-723
β-strand81-83367
α-helix84-10118
α-helix110-13122
α-helix134-1418
α-helix149-1502
β-strand152-154367
β-strand160167
α-helix172-18817
α-helix196-21015
α-helix211-2144
β-strand217168
β-strand233168
α-helix236-24914
β-strand253169
α-helix261-2633
β-strand264169
α-helix269-28012
α-helix296-3005
α-helix310-32415
β-strand325170
β-strand330-331270
α-helix350-3512
α-helix354-3585
β-strand364-365270
α-helix367-37812
α-helix382-39514
β-strand397-398271
β-strand404-405271
β-strand410-411270
α-helix412-4132
α-helix414-4163
α-helix417-4226
β-strand430-431270
α-helix442-45514
α-helix461-4644
α-helix473-4753
β-strand484172
β-strand487172
β-strand494-495273
β-strand498-501474
α-helix504-5129
β-strand518174
β-strand526-529475
α-helix531-5388
β-strand544176
β-strand549176
β-strand565-568475
β-strand571-575575
α-helix578-5803
α-helix586-5894
α-helix591-60818
α-helix614-6152
β-strand618-621474
α-helix623-6264
α-helix628-6303
α-helix631-64313
β-strand650-651273
α-helix656-6594
β-strand665-668475
α-helix716-7205
α-helix727-7304
α-helix737-75014
β-strand756177
β-strand761177
α-helix762-77514
α-helix779-78810
α-helix796-80510
β-strand809-813578
β-strand819-822478
α-helix828-8336
α-helix834-8396
α-helix845-86319
α-helix865-8684
β-strand873-875378
α-helix876-89116
α-helix895-8984
α-helix899-9013
α-helix904-91411
β-strand920179
β-strand922179
α-helix924-93411
α-helix941-95010
β-strand956-958380
β-strand961-963380
α-helix968-9714
α-helix977-98610
α-helix987-9893
α-helix993-101220
β-strand1016181
β-strand1022-1023280
α-helix1024-104320
α-helix1052-10565
α-helix1065-107814
β-strand1082181
Chains C, G, K and O: 4 helices, 1 β-strand
ElementResiduesLengthSheet
α-helix330-3356
α-helix341-35515
α-helix368-3703
β-strand371116
α-helix376-3794
Chains E and I: 55 helices, 42 β-strands
ElementResiduesLengthSheet
α-helix8-2114
α-helix23-253
β-strand42-43217
α-helix44-507
α-helix52-6211
α-helix68-9326
α-helix96-1049
α-helix108-1103
α-helix112-1132
β-strand115-116217
α-helix127-1293
α-helix135-14915
α-helix159-17113
β-strand180118
β-strand196118
α-helix199-21113
α-helix232-24514
β-strand250119
β-strand253119
β-strand256120
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand288-289221
β-strand292-294321
β-strand296120
α-helix325-3262
β-strand327-328221
α-helix330-3378
β-strand372-374321
α-helix377-3793
α-helix380-3856
α-helix3921
β-strand393-395321
α-helix401-41414
α-helix420-4234
α-helix428-4303
α-helix434-4385
β-strand440-446722
α-helix449-4579
β-strand463-464222
β-strand472-474323
α-helix476-4838
β-strand489124
β-strand494124
α-helix506-5083
β-strand511-513323
β-strand516-520523
α-helix523-5264
α-helix531-5333
α-helix536-55318
β-strand559125
β-strand561-566622
α-helix568-5703
β-strand571126
β-strand578126
α-helix580-59011
β-strand593-594227
β-strand597-598227
β-strand599-601322
α-helix606-6083
β-strand611125
β-strand614-615223
α-helix617-6193
α-helix767-7704
α-helix782-7887
α-helix789-7935
β-strand799128
β-strand805128
α-helix806-82015
α-helix823-83210
α-helix840-84910
β-strand853-855329
β-strand866-867229
α-helix873-88311
α-helix891-90717
α-helix909-9124
β-strand915130
β-strand917-919329
α-helix920-93314
α-helix939-9457
α-helix951-96313
α-helix1053-106311
β-strand1066130
α-helix1071-108111
β-strand1084-1087431
β-strand1090-1093431
α-helix1094-10963
α-helix1107-11148
α-helix1121-114020
β-strand1149-1150231
α-helix1151-116919
β-strand1178132
β-strand1185132
α-helix1186-11905
β-strand1194133
α-helix1199-12079
Chain F: 57 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix45-5915
α-helix70-723
β-strand81-83382
α-helix84-10118
α-helix110-13122
α-helix134-1418
α-helix149-1502
β-strand152-154382
β-strand160182
α-helix172-18817
α-helix196-21015
α-helix211-2144
β-strand217183
β-strand233183
α-helix236-24914
β-strand252-253284
α-helix261-2633
β-strand264-265284
α-helix269-28214
α-helix296-3005
α-helix310-32415
β-strand325185
β-strand330-331285
α-helix350-3512
α-helix354-3585
β-strand364-365285
α-helix367-37812
α-helix382-39514
β-strand397-398286
β-strand404-405286
β-strand410-411285
α-helix412-4132
α-helix414-4163
α-helix417-4226
β-strand430-431285
α-helix442-45514
α-helix461-4644
α-helix473-4753
β-strand484187
β-strand487187
β-strand494-495288
β-strand498-501489
α-helix504-5129
β-strand518189
β-strand526-529490
α-helix531-5388
β-strand544191
β-strand549191
β-strand565-568490
β-strand571-575590
α-helix578-5803
α-helix586-5894
α-helix591-60818
α-helix614-6152
β-strand618-621489
α-helix623-6264
α-helix628-6303
α-helix631-64313
β-strand650-651288
α-helix656-6594
β-strand665-668490
α-helix716-7205
α-helix727-7304
α-helix737-75014
β-strand756192
β-strand761192
α-helix762-77514
α-helix779-78810
α-helix796-80510
β-strand809-813593
β-strand819-822493
α-helix828-8336
α-helix834-8396
α-helix845-86319
α-helix865-8684
β-strand873-875393
α-helix876-89116
α-helix895-8984
α-helix899-9013
α-helix904-91411
β-strand920194
β-strand922194
α-helix924-93411
α-helix941-95010
β-strand956-958395
β-strand961-963395
α-helix968-9714
α-helix977-98610
α-helix987-9893
α-helix993-101220
β-strand1016196
β-strand1022-1023295
α-helix1024-104320
α-helix1052-10565
α-helix1065-107814
β-strand1082196
Chains J and N: 57 helices, 39 β-strands
ElementResiduesLengthSheet
α-helix45-5915
α-helix70-723
β-strand81-83397
α-helix84-10118
α-helix110-13122
α-helix134-1418
α-helix149-1502
β-strand152-154397
β-strand160197
α-helix172-18817
α-helix196-21015
α-helix211-2144
β-strand217198
β-strand233198
α-helix236-24914
β-strand253199
α-helix261-2633
β-strand264199
α-helix269-28214
α-helix296-3005
α-helix310-32415
β-strand3251100
β-strand330-3312100
α-helix350-3512
α-helix354-3585
β-strand364-3652100
α-helix367-37812
α-helix382-39514
β-strand397-3982101
β-strand404-4052101
β-strand410-4112100
α-helix412-4132
α-helix414-4163
α-helix417-4226
β-strand430-4312100
α-helix442-45514
α-helix461-4644
α-helix473-4753
β-strand4841102
β-strand4871102
β-strand494-4952103
β-strand498-5014104
α-helix504-5129
β-strand5181104
β-strand526-5294105
α-helix531-5388
β-strand5441106
β-strand5491106
β-strand565-5684105
β-strand571-5755105
α-helix578-5803
α-helix586-5894
α-helix591-60818
α-helix614-6152
β-strand618-6214104
α-helix623-6264
α-helix628-6303
α-helix631-64313
β-strand650-6512103
α-helix656-6594
β-strand665-6684105
α-helix716-7205
α-helix727-7304
α-helix737-75014
β-strand7561107
β-strand7611107
α-helix762-77514
α-helix779-78810
α-helix796-80510
β-strand809-8135108
β-strand819-8224108
α-helix828-8336
α-helix834-8396
α-helix845-86319
α-helix865-8684
β-strand873-8753108
α-helix876-89116
α-helix895-8984
α-helix899-9013
α-helix904-91411
β-strand9201109
β-strand9221109
α-helix924-93411
α-helix941-95010
β-strand956-9583110
β-strand961-9633110
α-helix968-9714
α-helix977-98610
α-helix987-9893
α-helix993-101220
β-strand10161111
β-strand1022-10232110
α-helix1024-104320
α-helix1052-10565
α-helix1065-107814
β-strand10821111
Chain M: 56 helices, 40 β-strands
ElementResiduesLengthSheet
α-helix8-2114
α-helix23-253
β-strand42-43234
α-helix44-507
α-helix52-6211
α-helix68-9326
α-helix96-1049
α-helix108-1103
α-helix112-1132
β-strand115-116234
α-helix127-1293
α-helix135-14915
α-helix159-17113
β-strand180135
β-strand196135
α-helix199-21113
α-helix232-24514
β-strand250136
β-strand253136
β-strand256137
α-helix257-2593
α-helix260-2634
α-helix273-28614
β-strand288-289238
β-strand292-294338
β-strand296137
α-helix325-3262
β-strand327-328238
α-helix330-3378
β-strand372-374338
α-helix377-3793
α-helix380-3856
α-helix3921
β-strand393-395338
α-helix401-41414
α-helix420-4234
α-helix428-4303
α-helix434-4385
β-strand440-446739
α-helix449-4579
β-strand463-464239
β-strand472-474340
α-helix476-4838
β-strand489141
β-strand494141
α-helix506-5083
β-strand511-513340
β-strand516-520540
α-helix523-5264
α-helix531-5333
α-helix536-55318
β-strand559142
β-strand561-566639
α-helix568-5703
β-strand571143
β-strand578143
α-helix580-59011
β-strand593-594244
β-strand597-598244
β-strand599-601339
α-helix606-6083
β-strand611142
β-strand614-615240
α-helix617-6193
α-helix767-7704
α-helix782-7887
α-helix789-7935
β-strand799145
β-strand805145
α-helix806-82015
α-helix823-83210
α-helix840-84910
β-strand853-855346
β-strand866-867246
α-helix873-88311
α-helix891-90717
α-helix909-9124
β-strand915147
β-strand917-919346
α-helix920-93314
α-helix939-9457
α-helix951-96313
α-helix1053-106311
β-strand1066147
α-helix1071-108111
β-strand1084-1087448
β-strand1090-1093448
α-helix1094-10963
α-helix1107-11148
α-helix1121-114020
β-strand1149-1150248
α-helix1151-116919
α-helix1177-11793
α-helix1186-11905
β-strand1194149
α-helix1199-12079

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoformA, E, I, Mprotein1223Homo sapiensP46020 (AlphaFold model)
Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoformC, G, K, Oprotein387Homo sapiensQ16816 (AlphaFold model)
Phosphorylase b kinase regulatory subunit betaB, F, J, Nprotein1093Homo sapiensQ93100 (AlphaFold model)
Sequence of entity 1 (A, E, I, M), FASTA
>8JFL_1 Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform (chains A, E, I, M)
MRSRSNSGVRLDGYARLVQQTILCHQNPVTGLLPASYDQKDAWVRDNVYSILAVWGLGLA
YRKNADRDEDKAKAYELEQSVVKLMRGLLHCMIRQVDKVESFKYSQSTKDSLHAKYNTKT
CATVVGDDQWGHLQLDATSVYLLFLAQMTASGLHIIHSLDEVNFIQNLVFYIEAAYKTAD
FGIWERGDKTNQGISELNASSVGMAKAALEALDELDLFGVKGGPQSVIHVLADEVQHCQS
ILNSLLPRASTSKEVDASLLSVVSFPAFAVEDSQLVELTKQEIITKLQGRYGCCRFLRDG
YKTPKEDPNRLYYEPAELKLFENIECEWPLFWTYFILDGVFSGNAEQVQEYKEALEAVLI
KGKNGVPLLPELYSVPPDRVDEEYQNPHTVDRVPMGKLPHMWGQSLYILGSLMAEGFLAP
GEIDPLNRRFSTVPKPDVVVQVSILAETEEIKTILKDKGIYVETIAEVYPIRVQPARILS
HIYSSLGCNNRMKLSGRPYRHMGVLGTSKLYDIRKTIFTFTPQFIDQQQFYLALDNKMIV
EMLRTDLSYLCSRWRMTGQPTITFPISHSMLDEDGTSLNSSILAALRKMQDGYFGGARVQ
TGKLSEFLTTSCCTHLSFMDPGPEGKLYSEDYDDNYDYLESGNWMNDYDSTSHARCGDEV
ARYLDHLLAHTAPHPKLAPTSQKGGLDRFQAAVQTTCDLMSLVTKAKELHVQNVHMYLPT
KLFQASRPSFNLLDSPHPRQENQVPSVRVEIHLPRDQSGEVDFKALVLQLKETSSLQEQA
DILYMLYTMKGPDWNTELYNERSATVRELLTELYGKVGEIRHWGLIRYISGILRKKVEAL
DEACTDLLSHQKHLTVGLPPEPREKTISAPLPYEALTQLIDEASEGDMSISILTQEIMVY
LAMYMRTQPGLFAEMFRLRIGLIIQVMATELAHSLRCSAEEATEGLMNLSPSAMKNLLHH
ILSGKEFGVERSVRPTDSNVSPAISIHEIGAVGATKTERTGIMQLKSEIKQVEFRRLSIS
AESQSPGTSMTPSSGSFPSAYDQQSSKDSRQGQWQRRRRLDGALNRVPVGFYQKVWKVLQ
KCHGLSVEGFVLPSSTTREMTPGEIKFSVHVESVLNRVPQPEYRQLLVEAILVLTMLADI
EIHSIGSIIAVEKIVHIANDLFLQEQKTLGADDTMLAKDPASGICTLLYDSAPSGRFGTM
TYLSKAAATYVQEFLPHSICAMQ
Sequence of entity 2 (C, G, K, O), FASTA
>8JFL_2 Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform (chains C, G, K, O)
MTRDEALPDSHSAQDFYENYEPKEILGRGVSSVVRRCIHKPTSQEYAVKVIDVTGGGSFS
PEEVRELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKV
TLSEKETRKIMRALLEVICTLHKLNIVHRDLKPENILLDDNMNIKLTDFGFSCQLEPGER
LREVCGTPSYLAPEIIECSMNEDHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR
MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQNRYTAEEALAHPFFQQYLVEEVRHFS
PRGKFKVIALTVLASVRIYYQYRRVKPVTREIVIRDPYALRPLRRLIDAYAFRIYGHWVK
KGQQQNRAALFENTPKAVLLSLAEEDY
Sequence of entity 3 (B, F, J, N), FASTA
>8JFL_3 Phosphorylase b kinase regulatory subunit beta (chains B, F, J, N)
MAGAAGLTAEVSWKVLERRARTKRSGSVYEPLKSINLPRPDNETLWDKLDHYYRIVKSTL
LLYQSPTTGLFPTKTCGGDQKAKIQDSLYCAAGAWALALAYRRIDDDKGRTHELEHSAIK
CMRGILYCYMRQADKVQQFKQDPRPTTCLHSVFNVHTGDELLSYEEYGHLQINAVSLYLL
YLVEMISSGLQIIYNTDEVSFIQNLVFCVERVYRVPDFGVWERGSKYNNGSTELHSSSVG
LAKAALEAINGFNLFGNQGCSWSVIFVDLDAHNRNRQTLCSLLPRESRSHNTDAALLPCI
SYPAFALDDEVLFSQTLDKVVRKLKGKYGFKRFLRDGYRTSLEDPNRCYYKPAEIKLFDG
IECEFPIFFLYMMIDGVFRGNPKQVQEYQDLLTPVLHHTTEGYPVVPKYYYVPADFVEYE
KNNPGSQKRFPSNCGRDGKLFLWGQALYIIAKLLADELISPKDIDPVQRYVPLKDQRNVS
MRFSNQGPLENDLVVHVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWPQQELVKAYLQ
LGINEKLGLSGRPDRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVFLLIDDIKN
ALQFIKQYWKMHGRPLFLVLIREDNIRGSRFNPILDMLAALKKGIIGGVKVHVDRLQTLI
SGAVVEQLDFLRISDTEELPEFKSFEELEPPKHSKVKRQSSTPSAPELGQQPDVNISEWK
DKPTHEILQKLNDCSCLASQAILLGILLKREGPNFITKEGTVSDHIERVYRRAGSQKLWL
AVRYGAAFTQKFSSSIAPHITTFLVHGKQVTLGAFGHEEEVISNPLSPRVIQNIIYYKCN
THDEREAVIQQELVIHIGWIISNNPELFSGMLKIRIGWIIHAMEYELQIRGGDKPALDLY
QLSPSEVKQLLLDILQPQQNGRCWLNRRQIDGSLNRTPTGFYDRVWQILERTPNGIIVAG
KHLPQQPTLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELLMVVSIVLERNPELEFQD
KVDLDRLVKEAFNEFQKDQSRLKEIEKQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLLEG
EVKPNNDDPCLIS

Ligands and cofactors

IDNameFormulaCopies
ADPAdenosine-5'-diphosphateC10 H15 N5 O10 P24
FARFarnesylC15 H268

Primary citation

Architecture and activation of human muscle phosphorylase kinase. Yang, X., Zhu, M., Lu, X. et al. Nat Commun (2024) 15:2719-2719. DOI 10.1038/s41467-024-47049-2 · PubMed

Other PDB entries of the same protein (UniProt P46020 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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