8PVK: Utp30
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure. Determined by electron microscopy at 2.55 Å resolution. Released 6 Dec 2023.
- Method
- Electron microscopy
- Resolution
- 2.55 Å
- Organism
- Thermochaetoides thermophila DSM 1495
- Chains
- 60
- Atoms
- 160,598
- Mol. weight
- 3088.18 kDa
- Ligands
- GTP, MG, ZN
- Released
- 6 Dec 2023
Explore 8PVK in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8PVK contains 582 α-helices and 496 β-strands across 56 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain Cb: 8 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-8 | 3 | |
| α-helix | 12-14 | 3 | |
| α-helix | 19-27 | 9 | |
| α-helix | 29-37 | 9 | |
| α-helix | 45-48 | 4 | |
| β-strand | 51-52 | 2 | 102 |
| β-strand | 57-58 | 2 | 102 |
| α-helix | 62-69 | 8 | |
| α-helix | 72-83 | 12 | |
| α-helix | 88-95 | 8 | |
| β-strand | 98-100 | 3 | 95 |
Chain CB: 16 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 20-39 | 20 | |
| α-helix | 53-57 | 5 | |
| β-strand | 61-68 | 8 | 19 |
| β-strand | 81-83 | 3 | 20 |
| β-strand | 97-101 | 5 | 21 |
| α-helix | 104 | 1 | |
| α-helix | 105-115 | 11 | |
| α-helix | 118-123 | 6 | |
| β-strand | 124-129 | 6 | 21 |
| α-helix | 130-136 | 7 | |
| α-helix | 140-149 | 10 | |
| β-strand | 152-156 | 5 | 21 |
| α-helix | 163-172 | 10 | |
| α-helix | 178-179 | 2 | |
| β-strand | 180-182 | 3 | 21 |
| β-strand | 185 | 1 | 22 |
| α-helix | 186-187 | 2 | |
| α-helix | 205-207 | 3 | |
| β-strand | 214 | 1 | 22 |
| α-helix | 217-229 | 13 | |
| β-strand | 231-233 | 3 | 20 |
| β-strand | 240-247 | 8 | 19 |
| α-helix | 252-269 | 18 | |
| α-helix | 274-276 | 3 | |
| β-strand | 278-284 | 7 | 19 |
| α-helix | 290 | 1 | |
| β-strand | 291-295 | 5 | 19 |
| α-helix | 303-305 | 3 | |
Chain Cd: 27 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-14 | 8 | |
| α-helix | 16-17 | 2 | |
| α-helix | 32-42 | 11 | |
| β-strand | 47-48 | 2 | 105 |
| β-strand | 54-56 | 3 | 105 |
| β-strand | 68-69 | 2 | 68 |
| α-helix | 74-77 | 4 | |
| β-strand | 81-83 | 3 | 71 |
| α-helix | 85-96 | 12 | |
| β-strand | 104-108 | 5 | 106 |
| α-helix | 114-117 | 4 | |
| α-helix | 123-128 | 6 | |
| α-helix | 131-138 | 8 | |
| α-helix | 161-184 | 24 | |
| α-helix | 206 | 1 | |
| β-strand | 207 | 1 | 107 |
| α-helix | 208-211 | 4 | |
| α-helix | 212-215 | 4 | |
| α-helix | 220-232 | 13 | |
| β-strand | 235-241 | 7 | 108 |
| α-helix | 245-248 | 4 | |
| α-helix | 251-260 | 10 | |
| β-strand | 265-271 | 7 | 108 |
| α-helix | 273-275 | 3 | |
| α-helix | 278-288 | 11 | |
| β-strand | 294-296 | 3 | 108 |
| β-strand | 298 | 1 | 109 |
| β-strand | 305 | 1 | 109 |
| α-helix | 307-320 | 14 | |
| β-strand | 327-332 | 6 | 108 |
| α-helix | 339-347 | 9 | |
| β-strand | 365-370 | 6 | 108 |
| β-strand | 373-377 | 5 | 108 |
| α-helix | 390-396 | 7 | |
| α-helix | 401-403 | 3 | |
| α-helix | 407-410 | 4 | |
| α-helix | 411-417 | 7 | |
| α-helix | 420-427 | 8 | |
| α-helix | 435-446 | 12 | |
| β-strand | 449 | 1 | 110 |
| β-strand | 455 | 1 | 110 |
| α-helix | 457-469 | 13 | |
| α-helix | 477-481 | 5 | |
Chain Ce: 19 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4 | 1 | 117 |
| α-helix | 26-31 | 6 | |
| α-helix | 36-51 | 16 | |
| α-helix | 87-93 | 7 | |
| α-helix | 99-100 | 2 | |
| α-helix | 105-107 | 3 | |
| α-helix | 185-186 | 2 | |
| α-helix | 187-190 | 4 | |
| α-helix | 192-195 | 4 | |
| β-strand | 197 | 1 | 118 |
| α-helix | 201-204 | 4 | |
| α-helix | 207-209 | 3 | |
| α-helix | 211-213 | 3 | |
| β-strand | 214 | 1 | 62 |
| α-helix | 219-268 | 50 | |
| α-helix | 296-300 | 5 | |
| α-helix | 301-331 | 31 | |
| α-helix | 333-352 | 20 | |
| β-strand | 366 | 1 | 118 |
| β-strand | 372 | 1 | 119 |
| α-helix | 375-380 | 6 | |
| α-helix | 402-413 | 12 | |
| β-strand | 418 | 1 | 119 |
| α-helix | 425-428 | 4 | |
| β-strand | 430-434 | 5 | 120 |
| α-helix | 436-440 | 5 | |
Chain Cf: 14 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-19 | 10 | |
| α-helix | 25-28 | 4 | |
| β-strand | 30-35 | 6 | 122 |
| α-helix | 40-52 | 13 | |
| β-strand | 57-64 | 8 | 122 |
| α-helix | 73-82 | 10 | |
| β-strand | 86-91 | 6 | 122 |
| β-strand | 99-106 | 8 | 122 |
| β-strand | 109-118 | 10 | 122 |
| β-strand | 124 | 1 | 123 |
| α-helix | 126-128 | 3 | |
| α-helix | 132-134 | 3 | |
| β-strand | 135 | 1 | 124 |
| α-helix | 138-140 | 3 | |
| β-strand | 141-145 | 5 | 122 |
| α-helix | 156-167 | 12 | |
| β-strand | 175-177 | 3 | 125 |
| β-strand | 183-188 | 6 | 122 |
| β-strand | 225-235 | 11 | 122 |
| α-helix | 242 | 1 | |
| β-strand | 243-248 | 6 | 122 |
| β-strand | 252 | 1 | 123 |
| β-strand | 253-261 | 9 | 122 |
| α-helix | 262-264 | 3 | |
| α-helix | 265-271 | 7 | |
| α-helix | 281-283 | 3 | |
| β-strand | 287-289 | 3 | 106 |
| β-strand | 295-298 | 4 | 106 |
| α-helix | 309-312 | 4 | |
| α-helix | 315-317 | 3 | |
Chain CF: 19 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-11 | 6 | |
| α-helix | 15-17 | 3 | |
| α-helix | 20-33 | 14 | |
| β-strand | 39-44 | 6 | 28 |
| α-helix | 53-59 | 7 | |
| β-strand | 64-66 | 3 | 28 |
| α-helix | 70-77 | 8 | |
| α-helix | 89-92 | 4 | |
| α-helix | 93-95 | 3 | |
| β-strand | 100-105 | 6 | 28 |
| α-helix | 109-118 | 10 | |
| β-strand | 122-123 | 2 | 29 |
| α-helix | 124-126 | 3 | |
| α-helix | 129 | 1 | |
| β-strand | 130 | 1 | 30 |
| α-helix | 131 | 1 | |
| β-strand | 135-137 | 3 | 31 |
| α-helix | 138 | 1 | |
| β-strand | 140-141 | 2 | 32 |
| β-strand | 143 | 1 | 33 |
| β-strand | 156 | 1 | 33 |
| α-helix | 157-158 | 2 | |
| α-helix | 159-161 | 3 | |
| α-helix | 162-168 | 7 | |
| β-strand | 172-175 | 4 | 32 |
| β-strand | 178-181 | 4 | 32 |
| β-strand | 192-195 | 4 | 31 |
| α-helix | 199 | 1 | |
| β-strand | 200 | 1 | 30 |
| α-helix | 201 | 1 | |
| α-helix | 203-211 | 9 | |
| β-strand | 217-218 | 2 | 29 |
| β-strand | 222-228 | 7 | 28 |
| β-strand | 234-236 | 3 | 28 |
| α-helix | 238-242 | 5 | |
Chain Cg: 11 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22-24 | 3 | 122 |
| β-strand | 29-32 | 4 | 122 |
| α-helix | 44-68 | 25 | |
| β-strand | 72-75 | 4 | 125 |
| β-strand | 78-82 | 5 | 125 |
| α-helix | 83-86 | 4 | |
| α-helix | 95-97 | 3 | |
| α-helix | 99-103 | 5 | |
| α-helix | 104-112 | 9 | |
| α-helix | 115-118 | 4 | |
| β-strand | 126-128 | 3 | 130 |
| β-strand | 133-135 | 3 | 130 |
| α-helix | 143-145 | 3 | |
| β-strand | 152-155 | 4 | 101 |
| α-helix | 157-162 | 6 | |
| α-helix | 164 | 1 | |
| α-helix | 169-171 | 3 | |
| α-helix | 172-197 | 26 | |
Chain Ch: 10 helices, 41 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 36-42 | 7 | 132 |
| β-strand | 48 | 1 | 132 |
| β-strand | 53-56 | 4 | 132 |
| α-helix | 62-73 | 12 | |
| α-helix | 77-79 | 3 | |
| β-strand | 83-88 | 6 | 132 |
| β-strand | 95-96 | 2 | 132 |
| α-helix | 103-110 | 8 | |
| α-helix | 119 | 1 | |
| β-strand | 120-126 | 7 | 132 |
| α-helix | 127-128 | 2 | |
| α-helix | 131-135 | 5 | |
| β-strand | 137-142 | 6 | 133 |
| β-strand | 149-154 | 6 | 134 |
| β-strand | 161-166 | 6 | 134 |
| β-strand | 170-175 | 6 | 134 |
| β-strand | 180-186 | 7 | 134 |
| β-strand | 192-197 | 6 | 135 |
| β-strand | 204-208 | 5 | 135 |
| β-strand | 213-217 | 5 | 135 |
| β-strand | 222-223 | 2 | 135 |
| β-strand | 228 | 1 | 135 |
| β-strand | 235-240 | 6 | 136 |
| α-helix | 241-242 | 2 | |
| α-helix | 243-245 | 3 | |
| β-strand | 252-257 | 6 | 136 |
| β-strand | 261-266 | 6 | 136 |
| β-strand | 272-277 | 6 | 136 |
| β-strand | 283-288 | 6 | 137 |
| β-strand | 293-298 | 6 | 137 |
| β-strand | 303-307 | 5 | 137 |
| β-strand | 312-317 | 6 | 137 |
| β-strand | 324-329 | 6 | 138 |
| α-helix | 332-337 | 6 | |
| α-helix | 350-365 | 16 | |
| β-strand | 366-367 | 2 | 139 |
| β-strand | 370-371 | 2 | 139 |
| β-strand | 375-379 | 5 | 138 |
| β-strand | 384-387 | 4 | 138 |
| β-strand | 398-400 | 3 | 138 |
| β-strand | 407-412 | 6 | 140 |
| β-strand | 418-423 | 6 | 140 |
| β-strand | 428-432 | 5 | 140 |
| β-strand | 438-442 | 5 | 140 |
| β-strand | 449-454 | 6 | 141 |
| β-strand | 460-465 | 6 | 141 |
| β-strand | 470-474 | 5 | 141 |
| β-strand | 479-484 | 6 | 141 |
| β-strand | 491-496 | 6 | 133 |
| β-strand | 503-507 | 5 | 133 |
| β-strand | 512-516 | 5 | 133 |
48 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 26S rRNA | C1 | RNA | 3342 | Thermochaetoides thermophila DSM 1495 | |
| 5.8S rRNA | C2 | RNA | 156 | Thermochaetoides thermophila DSM 1495 | |
| ITS2 | C3 | RNA | 162 | Thermochaetoides thermophila DSM 1495 | |
| 5S rRNA | C4 | RNA | 119 | Thermochaetoides thermophila DSM 1495 | |
| Utp30 | CB | protein | 391 | Thermochaetoides thermophila DSM 1495 | G0S7X0 (AlphaFold model) |
| Large ribosomal subunit protein uL10 | CF | protein | 270 | Thermochaetoides thermophila DSM 1495 | G0S616 (AlphaFold model) |
| Nucleolar GTP-binding protein 1 | CH | protein | 661 | Thermochaetoides thermophila DSM 1495 | G0S8F1 (AlphaFold model) |
| Putative RNA-binding protein | CI | protein | 414 | Thermochaetoides thermophila DSM 1495 | G0S1H0 (AlphaFold model) |
| Pescadillo homolog | CJ | protein | 679 | Thermochaetoides thermophila DSM 1495 | G0SHX6 |
| Ribosome biogenesis protein NSA2 homolog | CK | protein | 261 | Thermochaetoides thermophila DSM 1495 | G0S081 |
| Putative GTP binding protein | CL | protein | 558 | Thermochaetoides thermophila DSM 1495 | G0SEW3 |
| 60S ribosomal protein l7-like protein | CM, LF | protein | 249 | Thermochaetoides thermophila DSM 1495 | G0SFL0 |
47 more molecules are not listed.
Sequence of entity 1 (C1), FASTA
>8PVK_1 26S rRNA (chains C1)
AGGUUGACCUCGGAUCAGGUAGGAGGACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGG
AAAAGAAACCAACAGGGAUUGCCCUAGUAACGGCGAGUGAAGCGGCAACAGCUCAAAUUU
GAAAGCUGGCUUCGGCCCGCGUUGUAAUUUGGAGAGGAUGCUUUGGGCGAGGCUCCUUCU
GAGUUCCCUGGAACGGGACGCCACAGAGGGUGAGAGCCCCGUAUAGUUGGAAGCCAAGCC
UGUGUAAAGCUCCUUCGACGAGUCGAGUAGUUUGGGAAUGCUGCUCAAAAUGGGAGGUAA
AUUUCUUCUAAAGCUAAAUACCGGCCAGAGACCGAUAGCGCACAAGUAGAGUGAUCGAAA
GAUGAAAAGCACUUUGAAAAGAGGGUUAAAUAGCACGUGAAAUUGUUGAAAGGGAAGCGC
UUGUGACCAGACUUGCGCCCGGCGGAUCAUCCGGUGUUCUCACCGGUGCACUCCGCCGGG
CUCAGGCCAGCAUCGGUUCUGGCGGGGGGAUAAAGGCCCAGGGAAUGUGGCUCCUCCGGG
AGUGUUAUAGCCCUGGGUGUAAUACCCUCGCCGGGACCGAGGACCGCGCUCUGCAAGGAU
GCUGGCGUAAUGGUCACCAGCGACCCGUCUUGAAACACGGACCAAGGAGUCAAGGUUUUG
CGCGAGUGUUUGGGUGUAAAACCCGCACGCGUAAUGAAAGUGAACGUAGGUGAGAGCUUC
GGCGCAUCAUCGACCGAUCCUGAUGUAUUCGGAUGGAUUUGAGUAGGAGCGUUAAGCCUU
GGACCCGAAAGAUGGUGAACUAUGCUUGGAUAGGGUGAAGCCAGAGGAAACUCUGGUGGA
GGCUCGCAGCGGUUCUGACGUGCAAAUCGAUCGUCAAAUCUGAGCAUGGGGGCGAAAGAC
UAAUCGAACCAUCUAGUAGCUGGUUACCGCCGAAGUUUCCCUCAGGAUAGCAGUGUCGAC
CUUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGGGACUCGGGGGCGAUUUUUAGCCUUCAU
CCAUUCUCAAACUUUAAAUAUGUAAGAAGCCCUUGUUACUUAACUGAACGUGGGCAUUCG
AAUGUAUCGACACUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCG
AACGCGGGGUUAAGGUGCCGGAGUGGACGCUCAUCAGACACCACAAAAGGCGUUAGUACA
UCUUGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGACUGUGUAACAACUC
ACCUGCCGAAUGUACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUCCCACCCAUACCCCG
CCCUCAGGGUAGAAACGAUGCCCUGAGGAGUAGGCGGCCGUGGAGGUCAGUGACGAAGCC
UAGGGCGUGAGCCCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAC
UUCAAUGAGAACUUGAAGGACCGAAGUGGGGAAAGGUUCCAUGUGAACAGCGGUUGGACA
UGGGUUAGUCGAUCCUAAGCCAUAGGGAAGUUCCGUUUCAAAGGGGCACUCGUGCCCCGU
GUGGCGAAAGGGAAGCCGGUUAAUAUUCCGGCACCUGGAUGUGGGUUUUGCGCGGCAACG
CAACUGAACGCGGAGACGACGGCGGGGGCCCCGGGCAGAGUUCUCUUUUCUUCUUAACGG
UCUAUCACCCUGGAAACAGUUUGUCUGGAGAUAGGGUUUAAUGGCCGGAAGAGCCCGACA
CUUCUGUCGGGUCCGGUGCGCUCUCGACGUCCCUUGAAAAUCCGCGGGAGGGAAUAAUUC
UCACGCCAGGUCGUACUCAUAACCGCAGCAGGUCCCCAAGGUGAACAGCCUCUGGUUGAU
AGAACAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAAAAGGAUUGG
CUCUAAGGGUUGGGCACGUUGGGCUUUGGGCGGACGCCCUGGGAGCAGAGGGCCUCUAGC
CGGGCAACCGGCCGGCGGCCCUCAGCACCCGGGGUUGAAGCCCUUAGCAGGCUUCGGCCG
UCCGGCGUGCGGUUAACAACCAACUUAGAACUGGUACGGACAGGGGGAAUCUGACUGUCU
AAUUAAAACAUAGCAUUGCGAUGGCCAGAAAGUGGUGUUGACGCAAUGUGAUUUCUGCCC
AGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAAC
UAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGA
UUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGG
CUUGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUG
AAAAGACAUAGGAGGUGUAGAAUAGGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACUC
CUAUUGUUUUUUUACUUAUUCAAUGAAGCGGGGCUGGACUUGCGUCCAACUUCUGGAGUU
AAGGUCCUUCGCGGGCCGACCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGG
CGGCACAUCUGUUAAACCAUAACGCAGGUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAU
CUCCAGUAGAACAAAAGGGUAAAAGUCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAAC
CAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGAAAUUUGAGGCUAGAGGUGCCAGA
AAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUU
UGAUCCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUU
GUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUU
ACCCUACUGAUGAACUCGUCGCAAUGGUAAUUCAGCUUAGUACGAGAGGAACCGCUGAUU
CAGAUAAUUGGUUUUUGCGGUUGUCCGACCGGGCAGUGCCGCGAAGCUACCAUCUGCUGG
AUAAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCCAGAACGCGACGAUACUACCCGCAC
GUUGUAGACGUAUAAGAAUAGGCUCCGGCCUCGUAUCCUAGCAGGCGAUUCCUCCGCCGG
CCUCGAAGUGGCCGUCGGUAAUUCGCGUAUUGCAAUUUAGACACGCGCGGGAUCAAAUCC
UUUGCAGACGACUUAGAUGUGCGAAAGGGUCCUGUAAGCAGUAGAGUAGCCUUGUUGUUA
CGAUCUGCUGAGGGUAAGCCCUCCUUCGCCUAGAUUUCCCAG
Sequence of entity 2 (C2), FASTA
>8PVK_2 5.8S rRNA (chains C2)
AAACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
AAGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCG
CCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCAU
Sequence of entity 3 (C3), FASTA
>8PVK_3 ITS2 (chains C3)
UUCAACCAUCAAGCCCUGGGCUUGUGUUGGGGACCCGCGGCUGCUCGCGGGCCCUGAAAA
GCAGUGGCGGGCUCGCUAGUCACACCGAGCGUAGUAGAACUUCUAUUCGAUCUCGCUCAG
GGCGUGCGGCGGGUGCCAGCCGUAAAACCCCAGCUUCUUCUA
Sequence of entity 4 (C4), FASTA
>8PVK_4 5S rRNA (chains C4)
ACGUACGACCAUACCCAGUGGAAAGCACGGCAUCCCGUCCGCUCUGCCCUAGUUAAGCCA
CUGAGGGCCCGGUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCGGGUGUUGUACGU
Sequence of entity 5 (CB), FASTA
>8PVK_5 Utp30 (chains CB)
MAPSTAVAKKETDAVIPVDPDQTLKACKALLAHIKKAAAAPRPDGKQNLLADEESTVAET
PIWLTLTTKKHIHDSHRLQPGKIILPHPLNTSEEISVCLITADPQRFYKNAVADEFPEDL
RAKIGRVIDISHLKAKFKAYEAQRKLFSEHDVFLADTRIINRLPKALGKTFYKTTTKRPI
PVVLMAQREKVNGKRVPAPKGKKEKRDPLENANARPIPEIVAEIRKAIGAALVHLSPSTN
TAIKVGYANWEPEKLAANIETVIRELVERFVPQKWQNVRNFYVKGPETAALPIYQTDELW
LDESKVVPDGQEPARALPGKREKANIGKKRKPLEDASQPALEETGKDERPKKKAKKTLPE
SNDDKLDKAIAERKEQLKKQKAAAKKVAADI
Sequence of entity 6 (CF), FASTA
>8PVK_6 Large ribosomal subunit protein uL10 (chains CF)
MPKSKRARVYHLTQVNKKGREAKERLFSNIRETIPKYQHCFVFSVDNMRNNYLKDVRHEL
NDCRIFFGKTKLMARALGTTPEEEQADGLHRLTRYLTGTVGLLFTNRDPADIESYFSNLS
QVDFARAGTVAPRTVTVPPGIVYSTGGEVPPEHDVPVSHTLEPELRRLGMPVRMIKGKVC
LGDEKGEASEGYTICKEGEVLDSRQTRLLKLFSICLSEFKVSLLGYWSSASGEVTELEAG
KTRPKREGNRRQAMNGDEMDEDQSSDEDSD
Sequence of entity 7 (CH), FASTA
>8PVK_7 Nucleolar GTP-binding protein 1 (chains CH)
MTGWKDIPPVPTAQEFIDIVLSRTQRRLPTQIRPGFKISRIRAFYTRKVKFTQETCSEKF
GAIISSFPVLSDQHPFHRDLMNILYDADHFKVALGQISTAKNLIETISRDYVRLLKYAQS
LYQCKQLKRAALGRMATLIKRLKDPLIYLDQVRQHLARLPDINPTTRTLLVAGFPNVGKS
SFVRSVTRADTPVEPYAFTTKSLFVGHLDYKYLRYQVIDTPGILDHPLEEMNTIEMQSVT
ALAHLRAAVLYFMDISEQCGFSLKAQINLFKSIKPLFANKMVFIVLNKMDIKKFEELDPE
MQQEINDLTKSGEVEILRASCATQEGVQEVKNHVCERLLVERVSQKLKAGTHSNGNIGTR
LQEVMARIHVATPMDGTTRETFIPEAVKNLKKYDKNDPNRRVLARDIEEANGGAGVFNVD
LRKDWILENPEWKYDKIPEIFDGKNVYDYIDPDIDAKLQALEEEEERLEKEGFYDEDDDL
PDEEEEEILQKAEYIREQHALIRNEAKMRKSLKNRAIIPRKAVKKPLSQLEDHLDQLGVD
TEAIGLRARAQTAQSSRGRSLVRSRGTTADPDAMDIDDGAASAKERLARSRSRARSVAAT
NRLQDGVQGTTLRSKAERQAKLAQRKMNRMARQGEADRHIHASMPKHLFSGKRTIGKTDR
R
Sequence of entity 8 (CI), FASTA
>8PVK_8 Putative RNA-binding protein (chains CI)
MAAELRKKKSKSAVADADAAISKKEKATKVTKATPKAEKRKAPEEASPVAIKKQKADKDA
VVKKAAVAAEDKIAEKPVKSVLKKETSAKAKEAAKPKKKQEKVEEEEEEALENADAAFGS
DEESELDEQTKALMDTLDDGEESDEDESKQVSTFKKGQDVGKIPTPKKAPQKQTNGDSKP
AGDSQPGVMYIARLPHGFYEHELRGYFSQFGEITRLRVVRNKKTGASRHRAFIEFADAEV
ADIAARTMDKYLLFGHILTCKIVPPAQVHPDLFKGANRRFKVVPWNKMAGRQLERPLSES
QWQVKVAKEEQRRAARAEKLKEMGYEFEAPALKVPKAKPVLENGEEEKKAIETAPAPAVE
EKESKEVAKRQAEEEVEEKAPAPKTKKVKEDKPAKEAATISAPKKGKKSKKTKS
Sequence of entity 9 (CJ), FASTA
>8PVK_9 Pescadillo homolog (chains CJ)
MGKAKKKGKSGAARNYMTRTQAVKKLQLSLPDFRKLCIWKGIYPREPRDRRKVNKSATAS
TTFYYTKDIQYLLHEPLLQKFREQKALEKKISRALGRGDVSNAARLERNANLPEKTGKPR
YTLNHIIRERYPTFQDALRDLDDCLSMLFLFANLPSTTAVPAKMIARCERLCHEFQHYLI
VTHSLRKSFLSIKGIYYQANIQGEDILWLVPYKFNQRIVGDVDFRIMGTFVEFYMTLLGF
VNYRLYTSIGLKYPPKFDQVKDDQGAELAAFSLEGLNLASQNGEQKAITNGEEHGPDPKV
QAEVDKLVAKLREEEQQANGDKTDEKGEENEGDDKPSDAIDKFEPVAPGGDVLPQPSYSS
SDPSQLFANFTFFLSRETPRQPLEFILRAFGCKRIGWDAVLGEGAFTTDESDPRITHQII
DRPVIRAAVSEDGDGEDNQTSQKLAPNGRYPGRIYVQPQWVWDSINDEELKPPELYAPGA
QLPPHLSPFVKPTQGQYDPTKPLEEQQTEAEALEAELEDAQAQQEGSDEESGSEVENDMS
VASDEEDEQEDDFGGFSDEDEEQSDEGSEEGDEEEDDDEEEEATLERQRELEAELAGKAV
SKGKPLDPKVKAKLEAKKALERKKKQEAEELERAKGMLSKKKRKLFEQMQYSNAKKNAED
AKLRAKRRRIEKEMAAKKA
Sequence of entity 10 (CK), FASTA
>8PVK_10 Ribosome biogenesis protein NSA2 homolog (chains CK)
MPQNEYIERHRKLHGRRLDAEERARKKAAREGHKNSENAQNLRGLRAKLYAKQRHAQKIQ
MRKAIKQHEERNVKGRPAEKEPSDPIPSYLLDRANPTTAKALSSQIKNKRAEKAARFSVP
IPKVRGISEEEMFKVVKTGKKTHKKGWKRIVTKPTFVGPDFTRRPVKYERFIRPMGLRYK
KANVTHPTLNVTVQLPILSVKKNPSNPLYTQLGVLTKGTIIEVNVSDLGIVTASGKIAWG
RYAQITNNPENDGCVNAVLLV
Sequence of entity 11 (CL), FASTA
>8PVK_11 Putative GTP binding protein (chains CL)
MAGTINKPKKPTSKRKTTRLRAKISKRAAEKKRKERKLARKNPEWRSKLKKDPGIPNLFP
YKERLLQQIEEERIRRKEELLRKKELAKAAKTGADGDNKDDEQMQEDDEHMIREEELDLD
DAMDEDGSDVDESNPLAALVRSARKAAEEYEKELQSGSEMDEDDEDDSDDASDAGSDAGV
ITEVHGGATSRKAYDKVFKQVVEQADVILYVLDARDPEGTRSHDVEQAVMAAAGGGKRLM
LILNKVDLVPPPVLKGWLTYLRRFFPTLPLRASNPAPNARTFSHRDITVQSTSAALFRAL
KAYAAARNLKRAIAVGVIGYPNVGKSSVINALLSRLPGSARGGRTPCPAGAEAGVTTAIR
AVKIDSKLTLLDSPGIVFPSTASSQTFIPKNPVEAHAHLVLLNAIPPKQIEDPVPAVTLL
LKRLSATPELMDRLMQVYDIPPLLKDPSQGGDATMDFLVQVARKRGRLGRGGVPNIQAAA
MTVVTDWRDGRIQGWTEPPKIAVEGVKEGNEGKVVRKIADQEVAPDQKIIVTEWAKEFKL
AGLWGDEEQTEEGDKMEA
Sequence of entity 12 (CM, LF), FASTA
>8PVK_12 60S ribosomal protein l7-like protein (chains CM, LF)
MSSTTVPTQNDILVPETLLKKRKSQEKARAERAAALEKRKQANKEKRQVIFKRAEKYVKE
YREQEREKIRLARIAKQQGSFHIPAEAKLVFVIRIKGINKIPPKPRKILQLLRLRQINNG
VFVKVTKATAEMIKIVEPWVAYGYPNLKSVRELIYKRGYGKVNGQRIPLTDNAIIEENLG
KYGIICIEDLIHEIFTVGPNFKQAANFLWPFKLSNPNGGFRPRKFKHFIEGGDLGNREEH
INALIRAMN
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| GTP | Guanosine-5'-triphosphate | C10 H16 N5 O14 P3 | 2 |
| MG | Magnesium ion | Mg | 3 |
| ZN | Zinc ion | Zn | 5 |
Primary citation
Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Thoms, M., Lau, B., Cheng, J. et al. EMBO Rep (2023) 24:e57984-e57984. DOI 10.15252/embr.202357984 · PubMed
Other PDB entries of the same protein (UniProt G0S7X0 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 8PV7 2.12 Å, Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite…
- 8PV1 2.56 Å, Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite…
- 8I9Z 2.7 Å, Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- 8IA0 2.7 Å, Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
- 8I9X 2.8 Å, Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- 8PV3 2.8 Å, Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite…
- 9XAG 2.8 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum,…
- 8PV4 2.9 Å, Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite…
- 9XA8 2.9 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum,…
- 8I9P 3.0 Å, Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
- 9XAF 3.0 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum,…
- 8I9R 3.1 Å, Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
Browse structure collections
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