8W0G: Human MCM2-7 dimer

Cryo-EM structure of a human MCM2-7 dimer. Determined by electron microscopy at 3.8 Å resolution. Released 2 Oct 2024.

Method
Electron microscopy
Resolution
3.8 Å
Organism
Homo sapiens
Chains
12
Atoms
56,920
Mol. weight
1099.99 kDa
Ligands
ATP, MG, ZN, ADP
Released
2 Oct 2024

Explore 8W0G in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8W0G contains 322 α-helices and 321 β-strands across 12 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 2: 27 helices, 24 β-strands

ElementResiduesLengthSheet
α-helix182-1876
α-helix189-20517
α-helix214-22512
β-strand229-23351
α-helix234-2363
α-helix237-2415
α-helix243-2508
α-helix252-27019
β-strand282-28651
β-strand291-29222
α-helix299-3013
β-strand304-319162
β-strand322-32873
β-strand33513
β-strand339-34133
β-strand362-36983
β-strand373-37972
α-helix380-3812
α-helix390-3923
β-strand393-39862
α-helix400-4023
β-strand411-422122
α-helix432-4343
β-strand435-446122
α-helix458-46912
α-helix473-4808
α-helix489-50012
β-strand519-52354
α-helix529-53911
β-strand543-54755
β-strand558-56252
β-strand569-57352
α-helix575-5795
β-strand583-58755
α-helix594-60613
β-strand608-61366
β-strand616-62166
β-strand625-62625
β-strand62914
β-strand63217
β-strand64717
α-helix651-6555
β-strand659-66354
α-helix669-68517
α-helix688-6903
α-helix717-73014
α-helix740-75314
α-helix764-78017
α-helix788-80417
α-helix808-81710
α-helix819-8246
Chain 3: 28 helices, 28 β-strands
ElementResiduesLengthSheet
β-strand5-958
α-helix10-2314
α-helix31-4212
β-strand46-5059
α-helix51-577
α-helix59-679
α-helix70-8718
α-helix89-946
β-strand99-10359
β-strand110-111210
α-helix118-1203
β-strand124-1341110
α-helix135-1373
β-strand138-1481110
β-strand153-158610
β-strand177111
β-strand183111
β-strand185-186210
β-strand192-2021110
α-helix213-2142
β-strand217-222610
α-helix223-2253
β-strand234-2431010
β-strand256112
β-strand258-266910
α-helix278-29013
α-helix295-3039
α-helix311-32212
β-strand327-328213
β-strand334-335213
β-strand341-345514
α-helix351-36111
β-strand365-369514
β-strand381-384410
β-strand391-394410
α-helix397-4004
β-strand405-409514
α-helix411-4133
α-helix416-42813
β-strand430-433415
α-helix435-4373
β-strand440-443415
β-strand447-452614
α-helix453-4542
α-helix465-4695
α-helix475-4784
β-strand481-485514
α-helix491-50616
α-helix562-5643
α-helix565-57713
β-strand581116
α-helix584-60017
α-helix611-6133
α-helix615-63117
β-strand636116
α-helix639-65315
Chain 4: 23 helices, 24 β-strands
ElementResiduesLengthSheet
α-helix159-17113
α-helix192-20312
β-strand207-211517
α-helix212-2187
α-helix220-2289
α-helix230-24516
β-strand259-263517
β-strand267118
α-helix276-2783
β-strand282-2911018
α-helix294-2952
β-strand296-3061118
β-strand312-316518
β-strand337-3562018
α-helix3571
α-helix358-3603
β-strand369-375718
β-strand387-3971118
β-strand400119
β-strand408-409219
β-strand411120
β-strand413-4231118
α-helix443-45311
α-helix458-4658
α-helix475-48511
α-helix487-4893
β-strand506-510521
α-helix516-52611
β-strand531-534421
β-strand546-549422
β-strand556-559422
α-helix562-5654
β-strand570-574521
α-helix581-59313
β-strand595-598423
β-strand605-608423
β-strand612-617621
α-helix630-6345
α-helix638-6436
β-strand646-650521
α-helix656-67015
α-helix684-69613
β-strand702124
α-helix704-72219
α-helix731-74818
β-strand753124
α-helix755-77218
Chain 5: 30 helices, 31 β-strands
ElementResiduesLengthSheet
α-helix7-93
β-strand10125
α-helix28-4114
β-strand44-46326
β-strand50-52326
α-helix54-6411
β-strand69-70227
β-strand73128
α-helix74-807
α-helix82-909
α-helix92-11019
α-helix114-1152
β-strand125-126227
β-strand129128
α-helix133-1342
α-helix142-1443
β-strand145129
β-strand148-1591229
α-helix160-1612
β-strand162-165412
β-strand167-172630
β-strand178-183630
α-helix184-1852
β-strand212-214330
β-strand221-224412
β-strand225-230629
α-helix2371
α-helix241-2433
β-strand244-249629
β-strand262-270929
β-strand293-301929
α-helix316-32712
α-helix331-3399
α-helix349-35810
α-helix3631
β-strand364131
α-helix3651
β-strand370131
β-strand377-380432
α-helix387-39711
β-strand401-405532
β-strand417-421529
β-strand426-430529
α-helix433-4364
β-strand441-445532
α-helix447-4493
α-helix452-46413
β-strand466-471633
β-strand474-479633
β-strand483-488632
α-helix508-5136
β-strand516-519432
α-helix556-56914
β-strand573-574234
α-helix576-59217
α-helix610-62617
β-strand631-632234
α-helix634-65825
α-helix666-68217
α-helix691-70010
α-helix705-71713
Chain 6: 27 helices, 27 β-strands
ElementResiduesLengthSheet
α-helix21-3616
α-helix45-539
β-strand60-64535
α-helix65-717
α-helix73-819
α-helix83-10119
β-strand111-115535
β-strand120-121236
α-helix123-1253
α-helix128-1303
β-strand131136
β-strand134-1532036
β-strand154-158537
β-strand164-168537
β-strand191-193337
β-strand199-2091136
α-helix2161
α-helix219-2213
β-strand224-229636
α-helix230-2334
β-strand241-2521236
β-strand294-3051236
α-helix322-3287
α-helix331-34212
α-helix346-3549
α-helix362-37312
β-strand378-379238
β-strand385-386238
β-strand391-396639
α-helix402-41211
β-strand416-420539
β-strand432-435436
β-strand442-445436
α-helix448-4514
β-strand456-460539
α-helix462-4643
α-helix467-47913
β-strand481-486640
β-strand489-494640
β-strand498-503639
α-helix516-5194
α-helix524-5296
β-strand532-536539
α-helix542-55716
α-helix569-58012
β-strand585141
α-helix588-60417
β-strand612142
α-helix618-63417
β-strand639141
α-helix642-65514
α-helix6571
β-strand658142
α-helix6591
Chain 7: 29 helices, 29 β-strands
ElementResiduesLengthSheet
α-helix6-1813
β-strand22-23243
α-helix25-273
β-strand29-30243
α-helix32-4110
β-strand47-51544
α-helix52-565
α-helix60-689
α-helix71-8818
α-helix97-11115
α-helix128-1303
β-strand135-139544
β-strand147120
α-helix154-1563
β-strand160-1701120
β-strand171145
α-helix172-1732
β-strand174-1831020
β-strand190-194520
β-strand199-200219
α-helix201-2033
β-strand205146
α-helix209-2146
β-strand219146
β-strand221-222220
β-strand228-2381120
β-strand252-258720
α-helix259-2613
β-strand270-2801120
β-strand293110
β-strand295-3051120
α-helix321-3288
α-helix332-3387
α-helix348-35912
β-strand377-381547
α-helix387-39711
β-strand401-404447
β-strand417-419345
β-strand428-430345
α-helix433-4364
β-strand440-444547
α-helix447-4493
α-helix452-46413
β-strand466-469448
β-strand476-479448
β-strand482-488747
α-helix5001
α-helix509-5146
β-strand517-521547
α-helix527-54317
α-helix546-5483
α-helix552-5554
α-helix556-56813
β-strand572149
α-helix575-59420
α-helix603-62018
β-strand624149
α-helix627-64317
Chain A: 27 helices, 23 β-strands
ElementResiduesLengthSheet
α-helix182-1876
α-helix189-20517
α-helix214-22512
β-strand229-233550
α-helix234-2363
α-helix237-2415
α-helix243-2508
α-helix252-27019
β-strand282-286550
β-strand291151
α-helix299-3013
β-strand304-3161351
β-strand319152
β-strand322-328753
β-strand335-341753
β-strand362-369853
β-strand373152
β-strand374-379651
α-helix380-3812
α-helix390-3923
β-strand393-398651
β-strand411-4221251
α-helix432-4343
β-strand435-4461251
α-helix458-46912
α-helix473-4797
α-helix489-50012
β-strand519-523554
α-helix529-53911
β-strand543-547555
β-strand558-562551
β-strand569-573551
α-helix575-5795
β-strand583-587555
α-helix594-60613
β-strand608-613656
β-strand616-621656
β-strand626155
β-strand629154
α-helix651-6555
β-strand659-663554
α-helix669-68517
α-helix688-6903
α-helix712-7165
α-helix717-73014
α-helix740-75314
α-helix764-78017
α-helix788-80417
α-helix808-81710
α-helix819-8246
Chain B: 27 helices, 28 β-strands
ElementResiduesLengthSheet
β-strand5-9510
α-helix10-2314
α-helix31-4212
β-strand46-48357
α-helix51-577
α-helix59-679
α-helix69-8719
α-helix89-946
β-strand99-101357
β-strand110-11128
α-helix118-1203
β-strand124-134118
α-helix135-1373
β-strand138-148118
β-strand153-15868
β-strand177158
β-strand183158
β-strand185-18628
β-strand192-202118
β-strand217-22268
α-helix223-2253
β-strand234-243108
β-strand256159
β-strand258-26698
α-helix278-29013
α-helix294-30310
α-helix311-32212
β-strand327160
β-strand335160
β-strand341-345561
α-helix351-36111
β-strand365-368461
β-strand381-38448
β-strand391-39448
α-helix397-4004
β-strand405-408461
α-helix411-4133
α-helix416-42813
β-strand430-433462
α-helix435-4373
β-strand440-443462
β-strand447-452661
α-helix453-4542
α-helix465-4695
α-helix474-4785
β-strand481-485561
α-helix491-50616
α-helix562-5643
α-helix565-57713
β-strand581163
α-helix584-60017
α-helix611-6133
α-helix615-63117
β-strand636163
α-helix639-65315

4 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
DNA replication licensing factor MCM22, Aprotein904Homo sapiensP49736 (AlphaFold model)
DNA replication licensing factor MCM33, Bprotein810Homo sapiensP25205 (AlphaFold model)
DNA replication licensing factor MCM44, Cprotein866Homo sapiensP33991 (AlphaFold model)
DNA replication licensing factor MCM55, Dprotein734Homo sapiensP33992 (AlphaFold model)
DNA replication licensing factor MCM66, Eprotein821Homo sapiensQ14566
DNA replication licensing factor MCM77, Fprotein719Homo sapiensP33993
Sequence of entity 1 (2, A), FASTA
>8W0G_1 DNA replication licensing factor MCM2 (chains 2, A)
MAESSESFTMASSPAQRRRGNDPLTSSPGRSSRRTDALTSSPGRDLPPFEDESEGLLGTE
GPLEEEEDGEELIGDGMERDYRAIPELDAYEAEGLALDDEDVEELTASQREAAERAMRQR
DREAGRGLGRMRRGLLYDSDEEDEERPARKRRQVERATEDGEEDEEMIESIENLEDLKGH
SVREWVSMAGPRLEIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAR
EHVLAYFLPEAPAELLQIFDEAALEVVLAMYPKYDRITNHIHVRISHLPLVEELRSLRQL
HLNQLIRTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQEVKPGSCPECQSAGP
FEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHN
NYDGSLNTANGFPVFATVILANHVAKKDNKVAVGELTDEDVKMITSLSKDQQIGEKIFAS
IAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKYIEKVS
SRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSI
HEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDIL
CVVRDTVDPVQDEMLARFVVGSHVRHHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVL
KKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESMATGSIPITVRHIESMIRMAEAHARI
HLRDYVIEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQLV
AEQVTYQRNRFGAQQDTIEVPEKDLVDKARQINIHNLSAFYDSELFRMNKFSHDLKRKMI
LQQF
Sequence of entity 2 (3, B), FASTA
>8W0G_2 DNA replication licensing factor MCM3 (chains 3, B)
SNAAGTVVLDDVELREAQRDYLDFLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKN
EKRANRLLNNAFEELVAFQRALKDFVASIDATYAKQYEEFYVGLEGSFGSKHVSPRTLTS
CFLSCVVCVEGIVTKCSLVRPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKD
EENNPLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVV
GTYRCLPGKKGGYTSGTFRTVLIACNVKQMSKDAQPSFSAEDIAKIKKFSKTRSKDIFDQ
LAKSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRYV
LCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMD
RTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSR
FDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPNFSQED
QQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRLR
SQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAYFKKVL
EKEKKRKKRSEDESETEDEEEKSQEDQEQKRKRRKTRQPDAKDGDSYDPYDFSDTEEEMP
QVHTPKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEE
PFSSVEIQAALSKMQDDNQVMVSEGIIFLI
Sequence of entity 3 (4, C), FASTA
>8W0G_3 DNA replication licensing factor MCM4 (chains 4, C)
SNAMSSPASTPSRRGSRRGRATPAQTPRSEDARSSPSQRRRGEDSTSTGELQPMPTSPGV
DLQSPAAQDVLFSSPPQMHSSAIPLDFDVSSPLTYGTPSSRVEGTPRSGVRGTPVRQRPD
LGSAQKGLQVDLQSDGAAAEDIVASEQSLGQKLVIWGTDVNVAACKENFQRFLQRFIDPL
AKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDKNLYRQLISYPQEVIPTF
DMAVNEIFFDRYPDSILEHQIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIP
EMQEAFFQCQVCAHTTRVEMDRGRIAEPSVCGRCHTTHSMALIHNRSLFSDKQMIKLQES
PEDMPAGQTPHTVILFAHNDLVDKVQPGDRVNVTGIYRAVPIRVNPRVSNVKSVYKTHID
VIHYRKTDAKRLHGLDEEAEQKLFSEKRVELLKELSRKPDIYERLASALAPSIYEHEDIK
KGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKG
SSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLS
IAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEA
YDRRLAHHLVALYYQSEEQAEEELLDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVDM
RKIGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDVEEAKRLHREALKQSATDPR
TGIVDISILTTGMSATSRKRKEELAEALKKLILSKGKTPALKYQQLFEDIRGQSDIAITK
DMFEEALRALADDDFLTVTGKTVRLL
Sequence of entity 4 (5, D), FASTA
>8W0G_4 DNA replication licensing factor MCM5 (chains 5, D)
MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEV
LQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLT
NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGLTTSRGRDRVGVGIRSSYIRVLGIQ
VDTDGSGRSFAGAVSPQEEEEFRRLAALPNVYEVISKSIAPSIFGGTDMKKAIACLLFGG
SRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVMR
DPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNS
RCSVLAAANSVFGRWDETKGEDNIDFMPTILSRFDMIFIVKDEHNEERDVMLAKHVITLH
VSALTQTQAVEGEIDLAKLKKFIAYCRVKCGPRLSAEAAEKLKNRYIIMRSGARQHERDS
DRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAALSGTLSGV
EGFTSQEDQEMLSRIEKQLKRRFAIGSQVSEHSIIKDFTKQKYPEHAIHKVLQLMLRRGE
IQHRMQRKVLYRLK
Sequence of entity 5 (6, E), FASTA
>8W0G_5 DNA replication licensing factor MCM6 (chains 6, E)
MDLAAAAEPGAGSQHLEVRDEVAEKCQKLFLDFLEEFQSSDGEIKYLQLAEELIRPERNT
LVVSFVDLEQFNQQLSTTIQEEFYRVYPYLCRALKTFVKDRKEIPLAKDFYVAFQDLPTR
HKIRELTSSRIGLLTRISGQVVRTHPVHPELVSGTFLCLDCQTVIRDVEQQFKYTQPNIC
RNPVCANRRRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGD
KCDFTGTLIVVPDVSKLSTPGARAETNSRVSGVDGYETEGIRGLRALGVRDLSYRLVFLA
CCVAPTNPRFGGKELRDEEQTAESIKNQMTVKEWEKVFEMSQDKNLYHNLCTSLFPTIHG
NDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHVEEFSPRAVYTS
GKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRDQVAIHEAMEQQ
TISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSRFDLFFILVDEC
NEVTDYAIARRIVDLHSRIEESIDRVYSLDDIRRYLLFARQFKPKISKESEDFIVEQYKH
LRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKEAFRLLNKSIIRVE
TPDVNLDQEEEIQMEVDEGAGGINGHADSPAPVNGINGYNEDINQESAPKASLRLGFSEY
CRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRL
THYDHVLIELTQAGLKGSTEGSESYEEDPYLVVNPNYLLED
Sequence of entity 6 (7, F), FASTA
>8W0G_6 DNA replication licensing factor MCM7 (chains 7, F)
MALKDYALEKEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDP
ELVDSICENARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVR
SPQNQYPAELMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVA
TYTCDQCGAETYQPIQSPTFMPLIMCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEH
SDQVPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEA
HRIVKMNKSEDDESGAGELTREELRQIAEEDFYEKLAASIAPEIYGHEDVKKALLLLLVG
GVDQSPRGMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLR
DSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNA
RCSILAAANPAYGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYV
HQHSRQPPSQFEPLDMKLMRRYIAMCREKQPMVPESLADYITAAYVEMRREAWASKDATY
TSARTLLAILRLSTALARLRMVDVVEKEDVNEAIRLMEMSKDSLLGDKGQTARTQRPADV
IFATVRELVSGGRSVRFSEAEQRCVSRGFTPAQFQAALDEYEELNVWQVNASRTRITFV

Ligands and cofactors

IDNameFormulaCopies
ATPAdenosine-5'-triphosphateC10 H16 N5 O13 P38
MGMagnesium ionMg10
ZNZinc ionZn10
ADPAdenosine-5'-diphosphateC10 H15 N5 O10 P22

Primary citation

Multiple mechanisms for licensing human replication origins. Yang, R., Hunker, O., Wise, M. et al. Nature (2024) 636:488-498. DOI 10.1038/s41586-024-08237-8 · PubMed

Other PDB entries of the same protein (UniProt P49736 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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