8XVU: CXCR2

Structure of CXCR2 bound to CXCL2 (Ligand-receptor focused map). Determined by electron microscopy at 3.09 Å resolution. Released 15 Jan 2025.

Method: Electron microscopy
Resolution: 3.09 Å
Organism: Homo sapiens
Chains: 3
Atoms: 3,288
Mol. weight: 62.51 kDa
Released: 15 Jan 2025

Explore 8XVU in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8XVU contains 19 α-helices and 9 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain D: 2 helices, 4 β-strands

Element	Residues	Length	Sheet
β-strand	15	1	2
α-helix	20-22	3
β-strand	23-29	7	2
β-strand	39-44	6	2
β-strand	49-52	4	2
α-helix	57-68	12

Chain E: 1 helix, 3 β-strands

Element	Residues	Length	Sheet
β-strand	23-29	7	2
β-strand	39-44	6	2
β-strand	49-52	4	2
α-helix	57-67	11

Chain R: 16 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	38-41	4
α-helix	45-75	31
α-helix	82-110	29
α-helix	116-148	33
α-helix	154-160	7
α-helix	162-176	15
α-helix	178-182	5
β-strand	184-187	4	1
β-strand	195-198	4	1
α-helix	204-211	8
α-helix	213-216	4
α-helix	217-221	5
α-helix	222-239	18
α-helix	246-278	33
α-helix	286-303	18
α-helix	306-310	5
α-helix	311-315	5
α-helix	319-329	11

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
C-X-C chemokine receptor type 2	R	protein	416	Homo sapiens	P25025 (AlphaFold model)
C-X-C motif chemokine 2	D, E	protein	73	Homo sapiens	P19875 (AlphaFold model)

Sequence of entity 1 (R), FASTA

>8XVU_1 C-X-C chemokine receptor type 2 (chains R)
MGKTIIALSYIFCLVFADYKDDDDAANFTPVNGSSGNQSVRLVTSSSLEVLFQGPGSEDF
NMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFLLSLL
GNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSL
LKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPVLLFR
RTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFKAHMG
QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATEILGI
LHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL

Sequence of entity 2 (D, E), FASTA

>8XVU_2 C-X-C motif chemokine 2 (chains D, E)
APLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVK
KIIEKMLKNGKSN

Primary citation

Molecular basis of promiscuous chemokine binding and structural mimicry at the C-X-C chemokine receptor, CXCR2. Saha, S., Sano, F.K., Sharma, S. et al. Mol Cell (2025) 85:976-988.e9. DOI 10.1016/j.molcel.2025.01.024 · PubMed

Other PDB entries of the same protein (UniProt P25025 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6KVA 2.2 Å, Structure of anti-hCXCR2 abN48-2 in complex with its CXCR2 epitope
6KVF 2.79 Å, Structure of anti-hCXCR2 abN48 in complex with its CXCR2 epitope
8XXH 2.8 Å, Structure of CXCR2 bound to CXCL2 (CXCR2-CXCL2-Go Full map)
8XX6 2.99 Å, Structure of CXCR2 bound to CXCL8 (CXCR2-CXCL8-Go Full map)
8XWS 3.06 Å, Structure of CXCR2 bound to CXCL5 (Ligand-receptor focused map)
8XWV 3.07 Å, Structure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)
8XXR 3.17 Å, Structure of CXCR2 bound to CXCL6 (CXCR2-CXCL6-Go Full map)
8XXX 3.17 Å, Structure of CXCR2 bound to CXCL6 (Composite map)
6LFL 3.2 Å, Crystal structure of a class A GPCR
8XWN 3.29 Å, Structure of CXCR2 bound to CXCL8 (Ligand-receptor focused map)
8XX7 3.32 Å, Structure of CXCR2 bound to CXCL5 (CXCR2-CXCL5-Go Full map)
8XX3 3.38 Å, Structure of CXCR2 bound to CXCL3 (CXCR2-CXCL3-Go Full map)

Browse structure collections

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