8YV6: LC3B

Name: PDB 8YV6: Crystal structure of LC3B in complex with Influenza A virus M2 peptide
Published: 2024-11-13
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: virus

Crystal structure of LC3B in complex with Influenza A virus M2 peptide. Determined by X-ray diffraction at 1.75 Å resolution. Released 13 Nov 2024.

Method: X-ray diffraction
Resolution: 1.75 Å
Organisms: Homo sapiens, Influenza A virus
Chains: 2
Atoms: 1,094
Mol. weight: 18.01 kDa
Released: 13 Nov 2024

Explore 8YV6 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8YV6 contains 6 α-helices and 8 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 6 helices, 7 β-strands

Element	Residues	Length	Sheet
α-helix	7-10	4
α-helix	13-26	14
β-strand	30-37	8	1
α-helix	45-47	3
β-strand	51-55	5	1
β-strand	59	1	2
α-helix	60-71	12
β-strand	80-83	4	1
β-strand	86	1	1
β-strand	94	1	2
α-helix	95-102	8
α-helix	108	1
β-strand	109-114	6	1

Chain B: 0 helices, 1 β-strand

Element	Residues	Length	Sheet
β-strand	91-93	3	1

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Microtubule-associated proteins 1A/1B light chain 3B	A	protein	125	Homo sapiens	Q9GZQ8 (AlphaFold model)
Matrix protein 2	B	protein	28	Influenza A virus	A0A3S8TIH3

Sequence of entity 1 (A), FASTA

>8YV6_1 Microtubule-associated proteins 1A/1B light chain 3B (chains A)
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
MKLSV

Sequence of entity 2 (B), FASTA

>8YV6_2 Matrix protein 2 (chains B)
KSMREEYRKEQQSAVDADDGHFVSIELE

Primary citation

Crystal structure of LC3B in complex with Influenza A virus M2 peptide. Murata, D., Novoa, C., Beale, R. et al. To be published.

Other PDB entries of the same protein (UniProt Q9GZQ8 (AlphaFold model), which also has an AlphaFold model), best resolution first:

8Q53 1.36 Å, Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain…
6LAN 1.41 Å, Structure of CCDC50 and LC3B complex
5D94 1.53 Å, Crystal structure of LC3-LIR peptide complex
5MS5 1.53 Å, Low-salt structure of RavZ LIR2-fused human LC3B
2ZJD 1.56 Å, Crystal Structure of LC3-p62 complex
7GAG 1.59 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…
7GAU 1.59 Å, PanDDA analysis group deposition of ground-state model of MAP1LC3B
7ELG 1.6 Å, LC3B modificated with a covalent probe
3VTU 1.6 Å, Crystal structure of human LC3B_2-119
8Q7K 1.6 Å, IRGQ LIR2 peptide in complex with LC3B
7GAP 1.68 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…
7GAO 1.69 Å, PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with…

Browse structure collections

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