9F1D: 60S ribosomal protein L21
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK. Determined by electron microscopy at 3.26 Å resolution. Released 21 Aug 2024.
- Method
- Electron microscopy
- Resolution
- 3.26 Å
- Organisms
- Oryctolagus cuniculus, Homo sapiens, Schistosoma japonicum
- Chains
- 91
- Atoms
- 237,089
- Mol. weight
- 4125.66 kDa
- Ligands
- SPD, MG, SPM, GTP
- Released
- 21 Aug 2024
Explore 9F1D in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9F1D contains 688 α-helices and 605 β-strands across 84 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain Aa: 10 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 24-27 | 4 | |
| β-strand | 28-34 | 7 | 79 |
| β-strand | 43-50 | 8 | 79 |
| α-helix | 51-52 | 2 | |
| β-strand | 53 | 1 | 80 |
| β-strand | 56 | 1 | 80 |
| α-helix | 58-62 | 5 | |
| β-strand | 66-70 | 5 | 79 |
| α-helix | 71-73 | 3 | |
| β-strand | 82-92 | 11 | 79 |
| β-strand | 95-105 | 11 | 79 |
| α-helix | 107-113 | 7 | |
| β-strand | 118 | 1 | 81 |
| β-strand | 120-128 | 9 | 79 |
| β-strand | 134-143 | 10 | 79 |
| α-helix | 144-146 | 3 | |
| β-strand | 154 | 1 | 81 |
| α-helix | 158-177 | 20 | |
| α-helix | 181-186 | 6 | |
| α-helix | 192-200 | 9 | |
| β-strand | 207-219 | 13 | 79 |
| α-helix | 225-232 | 8 | |
Chain AA: 3 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-17 | 6 | |
| β-strand | 32-36 | 5 | 151 |
| β-strand | 43-47 | 5 | 151 |
| β-strand | 55 | 1 | 152 |
| β-strand | 62 | 1 | 152 |
| β-strand | 64-65 | 2 | 153 |
| α-helix | 71 | 1 | |
| β-strand | 72-73 | 2 | 153 |
| α-helix | 74 | 1 | |
| β-strand | 78-81 | 4 | 151 |
Chain Ab: 11 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 58-60 | 3 | |
| α-helix | 65-71 | 7 | |
| α-helix | 78-83 | 6 | |
| α-helix | 91-98 | 8 | |
| β-strand | 103-115 | 13 | 118 |
| β-strand | 120-131 | 12 | 118 |
| β-strand | 136-144 | 9 | 118 |
| α-helix | 147-160 | 14 | |
| β-strand | 162-164 | 3 | 118 |
| β-strand | 168 | 1 | 119 |
| β-strand | 179 | 1 | 119 |
| β-strand | 184-188 | 5 | 120 |
| β-strand | 191-196 | 6 | 120 |
| β-strand | 204-205 | 2 | 120 |
| α-helix | 208-217 | 10 | |
| β-strand | 222-227 | 6 | 120 |
| α-helix | 233-249 | 17 | |
| α-helix | 253-255 | 3 | |
| α-helix | 258-259 | 2 | |
| α-helix | 265-268 | 4 | |
| α-helix | 270-275 | 6 | |
Chain AB: 2 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-9 | 3 | |
| β-strand | 10-21 | 12 | 5 |
| β-strand | 27-34 | 8 | 5 |
| β-strand | 41-47 | 7 | 5 |
| β-strand | 55-58 | 4 | 5 |
| α-helix | 65-67 | 3 | |
Chain Ac: 12 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-28 | 22 | |
| β-strand | 34-42 | 9 | 149 |
| β-strand | 45-52 | 8 | 149 |
| α-helix | 55-59 | 5 | |
| α-helix | 61-63 | 3 | |
| α-helix | 64-77 | 14 | |
| α-helix | 79-80 | 2 | |
| β-strand | 84-89 | 6 | 149 |
| α-helix | 94-96 | 3 | |
| α-helix | 98-111 | 14 | |
| α-helix | 115-128 | 14 | |
| β-strand | 133-141 | 9 | 150 |
| β-strand | 147-155 | 9 | 150 |
| α-helix | 163-167 | 5 | |
| β-strand | 168-177 | 10 | 150 |
| β-strand | 180-189 | 10 | 150 |
| α-helix | 190-192 | 3 | |
| α-helix | 203-204 | 2 | |
| β-strand | 209-210 | 2 | 38 |
| α-helix | 211-214 | 4 | |
| β-strand | 223-226 | 4 | 55 |
Chain AC: 6 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 81-84 | 4 | |
| α-helix | 88-89 | 2 | |
| α-helix | 91-93 | 3 | |
| α-helix | 101-104 | 4 | |
| β-strand | 106-108 | 3 | 184 |
| β-strand | 114-116 | 3 | 184 |
| α-helix | 119 | 1 | |
| β-strand | 120 | 1 | 185 |
| α-helix | 121 | 1 | |
| β-strand | 131 | 1 | 185 |
| β-strand | 133-134 | 2 | 186 |
| β-strand | 138-141 | 4 | 186 |
| β-strand | 146-149 | 4 | 186 |
Chain Ad: 10 helices, 24 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-10 | 2 | 168 |
| α-helix | 16-18 | 3 | |
| β-strand | 27-28 | 2 | 168 |
| α-helix | 30-32 | 3 | |
| α-helix | 38-40 | 3 | |
| β-strand | 42-43 | 2 | 169 |
| α-helix | 44-45 | 2 | |
| α-helix | 46-51 | 6 | |
| α-helix | 58-66 | 9 | |
| β-strand | 71-72 | 2 | 170 |
| β-strand | 75-76 | 2 | 170 |
| β-strand | 83-84 | 2 | 169 |
| β-strand | 89-92 | 4 | 170 |
| β-strand | 97-100 | 4 | 170 |
| β-strand | 102-103 | 2 | 171 |
| β-strand | 109-110 | 2 | 171 |
| β-strand | 113-114 | 2 | 170 |
| α-helix | 118-120 | 3 | |
| β-strand | 121-125 | 5 | 172 |
| β-strand | 126-131 | 6 | 173 |
| α-helix | 133-135 | 3 | |
| β-strand | 137-141 | 5 | 173 |
| β-strand | 146-148 | 3 | 173 |
| β-strand | 159-163 | 5 | 172 |
| β-strand | 168-173 | 6 | 172 |
| β-strand | 180-183 | 4 | 174 |
| β-strand | 192-199 | 8 | 174 |
| β-strand | 207-211 | 5 | 174 |
| β-strand | 217-221 | 5 | 174 |
| α-helix | 222-224 | 3 | |
| β-strand | 225-227 | 3 | 174 |
| β-strand | 229-230 | 2 | 175 |
| β-strand | 233-234 | 2 | 175 |
| α-helix | 248-262 | 15 | |
Chain AD: 6 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 85-89 | 5 | |
| α-helix | 91-92 | 2 | |
| α-helix | 94-97 | 4 | |
| α-helix | 99-102 | 4 | |
| α-helix | 105-116 | 12 | |
| α-helix | 126-128 | 3 | |
76 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 28S rRNA | B5 | RNA | 4808 | Oryctolagus cuniculus | |
| 60S ribosomal protein L21 | BT | protein | 160 | Oryctolagus cuniculus | G1SHQ2 (AlphaFold model) |
| 60S ribosomal protein L29 | Bb | protein | 245 | Oryctolagus cuniculus | G1SGR6 (AlphaFold model) |
| 60S ribosomal protein L12 | Bt | protein | 165 | Oryctolagus cuniculus | G1SMR7 (AlphaFold model) |
| mRNA | AH | RNA | 3 | Oryctolagus cuniculus | |
| 40S ribosomal protein eS17 | Aq | protein | 135 | Oryctolagus cuniculus | G1TU13 (AlphaFold model) |
| 5S rRNA | B7 | RNA | 120 | Oryctolagus cuniculus | |
| P-site tRNA | AT | RNA | 76 | Oryctolagus cuniculus | |
| Small ribosomal subunit protein uS13 | Ar | protein | 151 | Oryctolagus cuniculus | G1TPG3 |
| 5.8S rRNA | B8 | RNA | 158 | Oryctolagus cuniculus | |
| 60S ribosomal protein L22 | BU | protein | 128 | Oryctolagus cuniculus | G1TSG1 |
| 40S ribosomal protein S19 | As | protein | 145 | Oryctolagus cuniculus | G1TN62 |
79 more molecules are not listed.
Sequence of entity 1 (B5), FASTA
>9F1D_1 28S rRNA (chains B5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGUGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG
GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCA
GCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAA
CAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAA
CCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGC
GUGGUCCGGCCGUGCCGGCGGUCUCGGCGGAUCUUUCCCGCUCCCCGUUCCUCCCGACCC
CUCCACCCGCUCCCCCUCCCCCGCCGGUCUUCUCCCUUCACGGGGGGUGGGUCGGCGGGU
GCGGGGGUGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGGACCGCCCCCCGGCCGGCG
ACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGACGG
CUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGGACGCCUCGCCGCCGUCGUCCGCGG
CGGCGGCGGGCGCGACCCCUCCCCGGGUGUUACAGCCCCGCCCCGGCAGCAGCAGCUCGC
CGAAUCCCGGGGCCGAGGGAGCGAGACCUGUGUCGCCGCGCUCUCCCCCCUCCCGGCGCU
CCCCCCCGCGGGGGUCCCCCGCGAGGGGGCUCCCCCCGCGGGGGCGCGCCGGUGUCGCCG
CCCUCGCGGGCGCGGCACGGGGGGGCCGGGCCGCCCCUCCCACGGCGCGACCGCUCUCCC
GGCCCCCGCCGCCGCCUCUUCGGGCGUGCGGCGGGGGUGGGGCGGACUGUCCCCAGUGCG
CCCCGGGCGUGUCACGCCGUCGGGCUCGGGGGAGAAGUCGGCCACGGCGCGUCGCGCGCC
UCCGCGUCCCCCCCUCGCCGUCUCCGGGCGGCGGGGGGGGGUUUCGGCGCGGUGUUCUCG
GCGCGCGCGCGCGAGCGAGCGCACGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCG
UCUUGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCC
GCCGUGGCGCAAUGAAGGUGAAGGCCGGCGGCGGCUUCCCGCCGUCGUCGGCCGAGGUGG
GAUCCCGAGGCCCUUCCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGC
CGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGG
CAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGG
UCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUC
CGAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCAACCCCGCAGUUUUAUCCGGUAAAGCG
AAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUA
AGAAGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACUU
UUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCC
GACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUG
GAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAA
AAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCUGGCAGUCGGCAGAGCGA
GAAAGAGAGUGGAGCGCGCCGCGGGACUCCCCCCGCGGGGGUCCCCGGCCACCCCCCCCC
CGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGC
GCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAC
GAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGAACAGCAGUUGAACAUGGGUC
AGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGACGGGCGAUGGCCUCCGUUGC
CCUCAGCCGAUCGAAAGGGAGUCGGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAGAUGGG
CGCCGCGAGGCGUCCAGUGCGGUAACGCGACCGAUCCCGGAGAAGCCGGCGGGAGCCCCG
GGGAGAGUUCUCUUUUCUUUGUGAAGGGCAGGGCGCCCUGGAAUGGGUUCGCCCCGAGAG
AGGGGCCCGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCGCUGGC
CCUUGAAAAUCCGGGGGAGAGGGUGUAAAUCUCGCGCCGGGCCGUACCCAUAUCCGCAGC
AGGUCUCCAAGGUGAACAGCCUCUGGCAUGUUGGAACAAUGUAGGUAAGGGAAGUCGGCA
AGCCGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGGGCUGGGUCGGUCGGGCUGGG
GCGCGAAGCGGGGCUGGGCGCGCGCCGCGGCUGGACGAGGCGCCGCCGCCCCCCCCACGC
CCGGGGCGCCCUCCCCCGGCCGGGUCCGCUCCCUCGCGCGCGCGUGCGCCGUGGCGCGCG
CCGCGCGCGCGGCCGAGCCCCGUCUCCCUCCCCCCCUCUCCCCUCCCGGGGCGGGGUGCG
GGGAGGGGCGGGCGGGGCCGUCGCUCGCCGCGCGUGCGCGUCGCUGCGCGUGCGCCGCGC
GGGGGGUCCGGCGGGCCUCCGGACGGGGGCUCCGGGCACCCGGGCACCCGGGGGGCCGGC
GGCGGCGGCGACUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCGCCCCAGCUGCGGCGG
GCGUCGCGGCCGCCCUCGGGGAGCCCGGCGGGCGCCGCGUGCGCGCGCGUGCGCGCCCGG
GGUCGGGGGGGUGCGAGGCAGGGGAGGCCCUCUCUCCUCCUCCCCCACCCCGGCGCCGCG
GCGCCGCGCGUGCGCGCGCGGUCUCCCCCCGCCGGGUCCGCCCCCGGGGCCGCGGUUCCG
CGCGGCGCCUCGCCUCGGCCGGCGCCUAGCAGCCGACUUAGAACUGGUGCGGACCAGGGG
AAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAU
GUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAA
CGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGAC
GCGCAUGAAXGGAUGAACGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAG
CCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUA
GUCUGGCACGGUGAAGAGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCUC
CCGCCCCCGCGAGGGGGCGGGGCGGGGUCCGCCGGCCUUGCGGGCCGCCGGUGAAAUACC
ACUACUCUUAUCGUUUUUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCCCGAGGGGCUC
UCGCUUCUGGCGCCAAGCGCCGGGCCCCGUCGGUCCGCGCGGGCCGGCGGCGGCCGGGCG
CGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCGGUACACCUGUCAAA
CGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAACCUCCCGUGGAGCAGAA
GGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCGUGAAAGCGGGGCCU
CACGAUCCUUCUGAGCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAAAGUUACCACAGGGA
UAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCG
GCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGUUCACCCACUAAUAG
GGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAUGU
GUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUUCAGACAUUUGGUGU
AUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGGAUUAUGACUGAACG
CCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUACGGCAGCGCCGAAGGAGCCUCGGUU
GGCCUCGGAUAGCCGGUCCCCCGCCGUCCCCGCCGGCGGCCCGCGUCGUGCGUCCGCCUC
GGCGGCGUGCGGCGCGCCCCCCGCCGCGCGUCGGGACCGGGGUCCGGUGCGGAGAGCCCU
UCGUCCCGGGAAAUGGGGCGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCG
CACGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUCGGGGU
UUCGUACGUAGCAGAGCAGCUCCCUCGCUGCGAUCUAUUGAAAGUCAGCCCUCGACACAA
GGGUUUGU
Sequence of entity 2 (BT), FASTA
>9F1D_2 60S ribosomal protein L21 (chains BT)
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK
TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK
EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Sequence of entity 3 (Bb), FASTA
>9F1D_3 60S ribosomal protein L29 (chains Bb)
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
NAKAMAARAEAIKALVKPKEVKPTIPKGVSRKLHRLAYIAHPKLGRRARARIARGLRLSR
PQTKAKAKTEPQIKGKVKAQIKAQAQAQIKSKGKGKAQAETKPKAQAETKPKAQAQAKPK
AQAQGKPKAQAQGKPKAQAQAKPKAQAQAKPKAQAQTKPKAQATPAAPVPAQAPPKGAQP
PAKAP
Sequence of entity 4 (Bt), FASTA
>9F1D_4 60S ribosomal protein L12 (chains Bt)
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV
KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
Sequence of entity 5 (AH), FASTA
>9F1D_5 mRNA (chains AH)
NNN
Sequence of entity 6 (Aq), FASTA
>9F1D_6 40S ribosomal protein eS17 (chains Aq)
MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR
IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT
QPTVGMNFKTPRGAV
Sequence of entity 7 (B7), FASTA
>9F1D_7 5S rRNA (chains B7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 8 (AT), FASTA
>9F1D_8 P-site tRNA (chains AT)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCA
Sequence of entity 9 (Ar), FASTA
>9F1D_9 Small ribosomal subunit protein uS13 (chains Ar)
SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTE
DEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR
GLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Sequence of entity 10 (B8), FASTA
>9F1D_10 5.8S rRNA (chains B8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUUG
Sequence of entity 11 (BU), FASTA
>9F1D_11 60S ribosomal protein L22 (chains BU)
MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGA
VTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQD
EEEEEDED
Sequence of entity 12 (As), FASTA
>9F1D_12 40S ribosomal protein S19 (chains As)
MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
RKLTPQGQRDLDRIAGQVAAANKKH
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| SPD | Spermidine | C7 H19 N3 | 30 |
| MG | Magnesium ion | Mg | 420 |
| SPM | Spermine | C10 H26 N4 | 3 |
| GTP | Guanosine-5'-triphosphate | C10 H16 N5 O14 P3 | 1 |
| IHP | Inositol hexakisphosphate | C6 H18 O24 P6 | 1 |
| ZN | Zinc ion | Zn | 8 |
Water and common crystallization additives (UNX) are not listed.
Primary citation
NAC guides a ribosomal multienzyme complex for nascent protein processing. Lentzsch, A.M., Yudin, D., Gamerdinger, M. et al. Nature (2024) 633:718-724. DOI 10.1038/s41586-024-07846-7 · PubMed
Other PDB entries of the same protein (UniProt G1SHQ2 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7O7Y 2.2 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 7OYD 2.3 Å, Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 7O7Z 2.4 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8RJB 2.69 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 8RJD 2.79 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8B6C 2.79 Å, Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
Browse structure collections
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