DNA-directed RNA polymerases I, II, and III subunit RPABC1 (POLR2E) is a 210-residue protein from Sus scrofa. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0A4X1VTX4.
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The mean pLDDT of this model is 93.7 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 88% |
| 70 to 90 | Confident: backbone generally right | 11% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9MLC | EM | 2.4 Å | E=1-210 |
| 7UNC | EM | 3.0 Å | E=1-210 |
| 7UND | EM | 3.0 Å | E=1-210 |
| 7EGB | EM | 3.3 Å | s=1-210 |
| 7EGC | EM | 3.9 Å | s=1-210 |
| 7ENA | EM | 4.07 Å | PE=1-210 |
| 7ENC | EM | 4.13 Å | PE=1-210 |
| 8GXS | EM | 4.16 Å | PE=1-210 |
| 8GXQ | EM | 5.04 Å | PE=1-210 |
| 8WAK | EM | 5.47 Å | s=1-210 |
| 8WAP | EM | 5.85 Å | s=1-210 |
| 8WAN | EM | 6.07 Å | s=1-210 |
| 8WAS | EM | 6.13 Å | s=1-210 |
| 8WAQ | EM | 6.29 Å | s=1-210 |
| 8WAO | EM | 6.4 Å | s=1-210 |
| 8WAR | EM | 7.2 Å | s=1-210 |
| 8WAL | EM | 8.52 Å | s=1-210 |
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