RNA polymerase II subunit B32 (PAS_chr2-2_0104) is a 186-residue protein from Komagataella phaffii (strain GS115 / ATCC 20864). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: C4R2U9.
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The mean pLDDT of this model is 78.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 11% |
| 70 to 90 | Confident: backbone generally right | 61% |
| 50 to 70 | Low: treat with caution | 24% |
| Below 50 | Very low: often disordered regions | 4% |
What pLDDT means and how to read it
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5XOG | X-ray | 3.0 Å | D=1-186 |
| 7XN7 | EM | 3.1 Å | D=1-186 |
| 8JH4 | EM | 3.2 Å | D=1-186 |
| 8YFQ | EM | 3.3 Å | D=1-186 |
| 7XSZ | EM | 3.4 Å | D=1-186 |
| 8YFR | EM | 3.4 Å | D=1-186 |
| 9WMS | EM | 3.4 Å | D=1-186 |
| 9II7 | EM | 3.5 Å | D=1-186 |
| 9WMT | EM | 3.59 Å | D=1-186 |
| 7XSE | EM | 3.6 Å | D=1-186 |
| 9UJS | EM | 3.62 Å | D=1-186 |
| 9WMW | EM | 3.62 Å | D=1-186 |
| 8JH3 | EM | 3.7 Å | D=1-186 |
| 6IR9 | EM | 3.8 Å | D=1-186 |
| 7XSX | EM | 3.8 Å | D=1-186 |
| 8H0V | EM | 3.8 Å | D=1-186 |
| 5XON | EM | 3.83 Å | D=1-186 |
| 7XTD | EM | 3.9 Å | D=1-186 |
| 7XTI | EM | 3.9 Å | D=1-186 |
| 7WBX | EM | 4.0 Å | D=1-186 |
Showing 20 of 45 experimental structures (best resolution first).
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