2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TM_0066) is a 205-residue protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q9WXS1.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 97.8 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 99% |
| 70 to 90 | Confident: backbone generally right | 1% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Homotrimer
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 1WA3 | X-ray | 1.9 Å | A/B/C/D/E/F=1-205 |
| 9UAQ | EM | 2.29 Å | A/B/C=2-205 |
| 1VLW | X-ray | 2.3 Å | A/B/C=1-205 |
| 9UCL | EM | 2.43 Å | A/B/C=2-205 |
| 9XOU | EM | 2.5 Å | A/B/C=2-205 |
| 9UBR | EM | 2.62 Å | A/B/C/D/E/F=2-205 |
| 8SZZ | EM | 2.9 Å | I/J/K/L/M/N/O/U/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n=1-205 |
| 8TVB | EM | 2.9 Å | A/B/C=2-205 |
| 8TYC | EM | 3.3 Å | a/b/c=2-205 |
| 8E01 | EM | 3.4 Å | A=1-205 |
| 8JGC | EM | 3.44 Å | A=1-205 |
| 8JGA | EM | 3.68 Å | A=1-205 |
| 7B3Y | EM | 3.7 Å | B=1-205 |
| 8EJF | EM | 3.72 Å | a/b/c=2-205 |
| 8TYE | EM | 3.8 Å | a/b/c=2-205 |
| 9FO3 | EM | 5.3 Å | 0/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V=1-205 |
| 5KP9 | EM | 5.7 Å | B=2-205 |
| 8A8N | EM | 6.7 Å | A=2-205 |
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