6SUE: TcdA1

Structure of Photorhabdus luminescens Tc holotoxin pore, Mutation TccC3-D651A. Determined by electron microscopy at 3.4 Å resolution. Released 6 Nov 2019.

Method
Electron microscopy
Resolution
3.4 Å
Organism
Photorhabdus luminescens
Chains
6
Atoms
108,270
Mol. weight
1690.3 kDa
Released
6 Nov 2019

Explore 6SUE in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6SUE contains 662 α-helices and 672 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 119 helices, 100 β-strands

ElementResiduesLengthSheet
β-strand10311
β-strand11112
α-helix115-12612
α-helix138-1414
α-helix145-1473
β-strand14913
α-helix153-1564
β-strand159-16024
α-helix163-17513
α-helix176-1783
α-helix182-1843
α-helix185-1906
α-helix202-21312
α-helix219-2235
α-helix225-2284
α-helix233-2408
α-helix245-2528
α-helix254-2552
α-helix257-2593
α-helix260-2678
α-helix273-2764
α-helix279-2857
α-helix290-2956
β-strand308-30925
β-strand312-31985
β-strand324-334115
α-helix338-3403
β-strand341-34996
β-strand352-35986
β-strand367-37265
β-strand376-38275
β-strand38716
β-strand391-39666
α-helix399-4024
β-strand406-41385
β-strand419-430125
α-helix432-4343
α-helix438-44912
α-helix454-4629
α-helix472-48716
α-helix492-4976
α-helix501-5044
α-helix514-5196
β-strand53117
α-helix546-55510
α-helix559-56911
β-strand58117
α-helix582-59716
α-helix602-61110
α-helix624-64421
α-helix648-6558
α-helix665-68016
α-helix688-69912
α-helix705-71814
α-helix727-7293
α-helix730-7345
α-helix735-7373
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81316
α-helix815-8173
α-helix818-8269
α-helix834-8385
α-helix843-85513
α-helix871-88616
α-helix892-8965
α-helix909-9113
α-helix912-92312
α-helix928-94922
α-helix950-9545
α-helix964-9718
β-strand982-98324
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103710
α-helix1041-10433
β-strand104618
β-strand104918
α-helix1055-106410
α-helix1071-108919
α-helix10911
β-strand1092-109879
β-strand1107-111379
β-strand1121-112779
α-helix1128-11303
β-strand1131110
β-strand1136110
α-helix1138-11403
β-strand114119
β-strand1145-114629
α-helix1154-11563
β-strand1159-1163511
β-strand1166-11771211
β-strand1181112
β-strand1188112
β-strand1193-12021011
β-strand1203113
β-strand1209113
α-helix1211-12122
β-strand1213-1216411
α-helix1218-12236
β-strand1233-1238614
β-strand1239115
β-strand1245-1250614
β-strand1253116
α-helix1256-12594
β-strand1265-1269514
β-strand1275-1277314
α-helix1278-12792
α-helix1280-128910
β-strand1296116
β-strand1300-1301217
β-strand130319
β-strand1306115
β-strand1309-1311318
β-strand1316119
β-strand1321-1324418
β-strand1331-1336618
β-strand1337119
β-strand1340-1345620
β-strand1348-1353620
β-strand1356-1360518
α-helix1367-137711
β-strand1493121
α-helix1495-14973
β-strand1499-1504618
β-strand1507-1512618
α-helix1513-15164
α-helix1520-15234
β-strand1528-1531418
β-strand1535-1538420
α-helix1539-15413
α-helix1542-15443
β-strand1545118
β-strand1548-15581118
β-strand1559121
β-strand1564-15771418
β-strand1585-1588417
β-strand1594-1597417
β-strand1602-1604317
α-helix1610-16178
α-helix1621-16244
α-helix1629-16313
β-strand1633-1635322
β-strand1640-1647823
α-helix1648-16503
β-strand1660-1666724
β-strand1673-1680824
β-strand1686-1693823
β-strand1705-1710624
β-strand1711125
β-strand1713125
β-strand1724-1727424
α-helix1729-17313
β-strand1733-1735324
β-strand1746-1749423
β-strand1755-1757322
α-helix1765-17695
α-helix1770-17745
α-helix1775-178511
α-helix1789-17968
β-strand1800126
β-strand1806-1807227
β-strand1810-1811227
α-helix18121
β-strand1816126
α-helix1819-18224
α-helix1837-18404
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
α-helix18971
β-strand189811
α-helix18991
β-strand190613
α-helix1907-19104
β-strand194912
α-helix1954-197118
β-strand1974128
β-strand1980128
α-helix1987-19915
α-helix1992-200211
β-strand2017129
α-helix2019-210486
α-helix2109-214436
α-helix2155-21639
α-helix2164-21696
α-helix2170-224374
α-helix2248-228336
α-helix2294-22963
α-helix2300-23034
α-helix2306-232419
α-helix2327-23282
β-strand2329-2336830
α-helix2338-23414
α-helix2346-23483
α-helix2353-236210
β-strand2367-2370431
β-strand2373-2377531
β-strand2387-2392631
α-helix2394-23963
α-helix2399-24013
α-helix2404-24063
β-strand2410-2418930
β-strand2422-2423232
β-strand2431-2435531
β-strand2447-2450431
β-strand2456130
β-strand2468129
α-helix2469-24702
β-strand2476130
β-strand2481-2486631
α-helix2491-24933
α-helix2500-25034
β-strand2508-2515830
Chain B: 119 helices, 95 β-strands
ElementResiduesLengthSheet
β-strand103133
β-strand111134
α-helix115-12612
α-helix138-1414
α-helix145-1473
β-strand149135
α-helix152-1565
β-strand159-160236
α-helix163-17513
α-helix176-1783
α-helix182-1843
α-helix185-1895
α-helix190-1923
α-helix202-2109
α-helix219-2224
α-helix225-2284
α-helix233-2408
α-helix245-2517
α-helix254-2552
α-helix257-2593
α-helix260-2678
α-helix273-2764
α-helix279-2857
α-helix290-2934
β-strand309137
β-strand312-318737
β-strand325-3341037
β-strand341-349938
β-strand352-359838
β-strand367-372637
β-strand376-382737
α-helix385-3862
β-strand387138
β-strand390-396738
α-helix399-4024
β-strand406-413837
β-strand419-4301237
α-helix432-4343
α-helix438-44912
α-helix454-4629
α-helix472-48716
α-helix492-4976
α-helix502-5043
β-strand508139
β-strand511139
α-helix512-5132
α-helix514-5196
α-helix546-55510
α-helix559-56911
α-helix582-59716
α-helix603-61210
α-helix619-6213
α-helix624-64421
α-helix648-6547
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-7326
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix794-7952
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix834-8385
α-helix843-85513
α-helix864-8663
α-helix871-88717
α-helix892-8987
α-helix909-9113
α-helix912-92312
α-helix928-95326
α-helix964-9718
β-strand982-983236
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1041-10433
α-helix1055-106410
α-helix1071-108919
α-helix10911
β-strand1092-1098740
β-strand1107-1113740
β-strand1121-1127740
α-helix1128-11303
β-strand1131141
β-strand1136141
β-strand1141140
α-helix1142-11443
β-strand1145-1147340
α-helix1154-11563
β-strand1159-1163542
β-strand1166-1172742
β-strand1175-1177343
β-strand1193-1195343
β-strand1197-1202642
β-strand1203144
β-strand1209144
α-helix1210-12123
β-strand1213-1216442
α-helix1218-12225
α-helix1231-12322
β-strand1233-1238645
β-strand1239146
β-strand1245-1250645
β-strand1253147
α-helix1256-12594
β-strand1265-1269545
β-strand1275-1277345
α-helix1278-12792
α-helix1280-128910
β-strand1296147
β-strand1300-1301248
β-strand1303-1304240
β-strand1306146
β-strand1309-1311349
β-strand1316150
β-strand1321-1324449
β-strand1331-1332249
β-strand1336149
β-strand1337150
β-strand1340-1345651
β-strand1348-1353651
β-strand1356-1360549
α-helix1367-137711
β-strand1493-15041249
β-strand1507-1512649
α-helix1513-15164
α-helix1520-15234
β-strand1528-1531449
β-strand1535-1538451
α-helix1542-15443
β-strand1545149
β-strand1548-15591249
β-strand1564-15771449
β-strand1585-1588448
β-strand1594-1597448
β-strand1602-1604348
α-helix1610-16178
α-helix1621-16244
α-helix1628-16314
β-strand1634-1635252
β-strand1640-1647853
α-helix1648-16503
β-strand1660-1666754
β-strand1674-1680754
β-strand1686-1693853
β-strand1705-1710654
β-strand1724-1727454
α-helix1729-17313
β-strand1733-1735354
β-strand1746-1750553
β-strand1755-1756252
α-helix1765-17684
α-helix1769-17746
α-helix1775-178511
α-helix1789-17968
β-strand1800155
β-strand1806-1807256
β-strand1810-1811256
α-helix18121
β-strand1816155
α-helix1819-18224
α-helix1827-18282
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand1898133
β-strand1906135
α-helix1907-19104
β-strand1949134
α-helix1954-197118
β-strand1974157
β-strand1980157
α-helix1987-19904
α-helix1992-200312
β-strand2017158
α-helix2019-210486
α-helix2109-214436
α-helix2151-21533
α-helix2156-21627
α-helix2168-224376
α-helix2248-228336
α-helix2294-22963
α-helix2300-23034
α-helix2306-232318
α-helix2327-23282
β-strand2329-2336859
α-helix2337-23426
α-helix2346-23483
α-helix2353-236210
β-strand2367-2370460
β-strand2373-2377560
β-strand2387-2392660
α-helix2393-23953
α-helix2399-24013
α-helix2404-24063
β-strand2410-2418959
β-strand2422-2423261
β-strand2431-2435560
α-helix2441-24422
β-strand2447-2450460
β-strand2456159
β-strand2468158
α-helix2469-24702
β-strand2476159
β-strand2481-2486660
α-helix2496-24983
α-helix2500-25034
β-strand2508-2515859
Chain C: 123 helices, 100 β-strands
ElementResiduesLengthSheet
β-strand103162
β-strand111163
α-helix115-12612
α-helix138-1414
α-helix145-1473
β-strand149164
α-helix153-1564
β-strand159-160265
α-helix163-17513
α-helix176-1783
α-helix183-1853
α-helix186-1905
α-helix202-21312
α-helix219-2224
α-helix225-2284
α-helix233-2408
α-helix245-2517
α-helix254-2552
α-helix257-2593
α-helix260-2678
α-helix273-2764
α-helix279-2868
α-helix290-2956
β-strand308-309266
β-strand312-318766
β-strand325-3341066
β-strand341-349967
β-strand352-359867
β-strand367-372666
β-strand376-382766
β-strand387167
α-helix3901
β-strand391-396667
α-helix399-4024
β-strand406-413866
β-strand419-421366
β-strand424-430766
α-helix432-4343
α-helix438-44912
α-helix454-46411
α-helix472-48716
α-helix492-4976
α-helix501-5044
α-helix514-5152
α-helix516-5205
β-strand531168
β-strand536169
β-strand544169
α-helix546-55510
α-helix559-56911
β-strand581168
α-helix582-59716
α-helix602-61110
α-helix624-64320
α-helix648-6547
α-helix665-67814
α-helix688-69912
α-helix705-71814
α-helix727-7348
β-strand739170
β-strand742170
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix834-8385
α-helix843-85513
α-helix864-8663
α-helix871-88717
α-helix892-8987
α-helix909-9113
α-helix912-92312
α-helix928-94922
α-helix950-9545
α-helix964-9707
β-strand982-983265
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1041-10433
α-helix1055-106410
α-helix1071-108919
α-helix10911
β-strand1092-1098771
β-strand1107-1113771
β-strand1121-1127771
α-helix1128-11303
β-strand1131172
β-strand1136172
β-strand1141171
β-strand1145-1147371
β-strand1159-1163573
β-strand1166-11771273
β-strand1193-12021073
β-strand1203174
β-strand1209174
α-helix1211-12122
β-strand1213-1216473
α-helix1218-12225
β-strand1233-1238675
β-strand1239176
β-strand1245-1250675
α-helix1256-12594
β-strand1265-1269575
β-strand1275-1277375
α-helix1278-12792
α-helix1280-129011
β-strand1296177
β-strand1299177
β-strand1300-1301278
β-strand1303-1304271
β-strand1306176
β-strand1309-1311379
β-strand1316180
β-strand1321-1324479
β-strand1331-1336679
β-strand1337180
β-strand1340-1345681
β-strand1348-1353681
β-strand1356-1360579
α-helix1367-137711
β-strand1493-15041279
β-strand1507-1512679
α-helix1513-15164
α-helix1520-15234
β-strand1528-1531479
β-strand1535-1538481
α-helix1539-15413
α-helix1542-15443
β-strand1545179
β-strand1548-15591279
β-strand1564-15771479
α-helix1582-15843
β-strand1585-1588478
β-strand1594-1597478
β-strand1602-1604378
α-helix1610-16178
α-helix1621-16244
α-helix1627-16293
α-helix16321
β-strand1633-1635382
α-helix16361
β-strand1640-1647883
α-helix1648-16503
β-strand1660-1666784
β-strand1674-1680784
β-strand1686-1693883
β-strand1705-1710684
β-strand1711185
β-strand1713185
β-strand1721186
β-strand1724-1727484
α-helix1729-17313
β-strand1733-1735384
β-strand1740186
β-strand1746-1750583
β-strand1755-1757382
α-helix1765-17684
α-helix1769-17746
α-helix1775-178511
α-helix1789-17968
β-strand1800187
β-strand1806-1807288
β-strand1810-1811288
α-helix18121
β-strand1816187
α-helix1819-18224
α-helix1827-18282
α-helix1831-18322
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
α-helix18971
β-strand1898162
α-helix18991
β-strand1906164
β-strand1949163
α-helix1954-197118
β-strand1974189
β-strand1980189
α-helix1987-19904
α-helix1992-200211
α-helix2010-20134
β-strand2017190
α-helix2019-210486
α-helix2109-214436
α-helix2150-21534
α-helix2155-21639
α-helix2164-21685
α-helix2169-224375
α-helix2248-228336
α-helix2294-22963
α-helix2300-23034
α-helix2306-232419
α-helix2327-23282
β-strand2329-2336891
α-helix2337-23426
α-helix2346-23483
α-helix2353-236210
β-strand2367-2370492
β-strand2373-2377592
β-strand2387-2392692
α-helix2393-23953
α-helix2399-24013
α-helix2404-24063
β-strand2410-2418991
β-strand2431-2435592
α-helix2441-24422
β-strand2447-2450492
β-strand2456191
β-strand2468190
α-helix2469-24702
β-strand2476191
β-strand2481-2486692
α-helix2491-24933
α-helix2498-25014
β-strand2508-2515891
Chain D: 117 helices, 97 β-strands
ElementResiduesLengthSheet
β-strand103193
β-strand111194
α-helix115-12612
α-helix138-1414
α-helix145-1473
β-strand149195
α-helix152-1565
β-strand159-160296
α-helix163-17513
α-helix176-1783
α-helix183-1864
α-helix202-21312
α-helix219-2235
α-helix225-2284
α-helix234-2407
α-helix245-2517
α-helix257-2593
α-helix260-2678
α-helix273-2764
α-helix279-2868
α-helix290-2934
β-strand308-309297
β-strand312-318797
β-strand325-3341097
β-strand341-349998
β-strand352-359898
β-strand367-372697
β-strand376-382797
β-strand387198
β-strand390-396798
α-helix399-4024
β-strand406-413897
β-strand419-4301297
α-helix432-4343
α-helix438-44912
α-helix454-4629
α-helix472-48716
α-helix492-4976
α-helix501-5044
α-helix514-5196
α-helix546-55510
α-helix559-56911
α-helix582-59716
α-helix602-61110
α-helix619-6213
α-helix624-64421
α-helix648-6547
α-helix665-67713
α-helix688-6914
α-helix693-6997
α-helix705-71814
α-helix727-7348
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81215
α-helix815-8173
α-helix818-8269
α-helix834-8385
α-helix843-85311
α-helix864-8663
α-helix871-88717
α-helix892-8987
α-helix909-9113
α-helix912-92211
α-helix923-9253
α-helix928-94922
α-helix950-9545
α-helix964-9718
β-strand982-983296
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1041-10433
α-helix1055-106410
α-helix1071-108919
α-helix10911
β-strand1092-1098799
β-strand1107-1113799
β-strand1121-1127799
α-helix1128-11303
β-strand11311100
β-strand11361100
β-strand1141199
β-strand1145-1146299
β-strand1159-11635101
β-strand1166-117510101
β-strand1195-12028101
β-strand12031102
β-strand12091102
α-helix1211-12122
β-strand1213-12164101
α-helix1218-12236
β-strand1233-12386103
β-strand12391104
β-strand1245-12506103
α-helix1256-12594
β-strand1265-12695103
β-strand1275-12784103
α-helix1280-129011
β-strand1300-13012105
β-strand1303-1304299
β-strand13061104
β-strand1309-13113106
β-strand13161107
β-strand1321-13233106
β-strand13241108
β-strand1331-13322108
β-strand13361108
β-strand13371107
β-strand1340-13456109
β-strand1348-13536109
β-strand1356-13605108
α-helix1367-137812
β-strand14931110
α-helix1495-14973
β-strand1499-15046106
β-strand1507-15126106
α-helix1513-15164
α-helix1520-15234
β-strand1528-15314108
β-strand1535-15384109
α-helix1539-15413
α-helix1542-15443
β-strand15451106
β-strand1548-155811106
β-strand15591110
β-strand1564-157714106
β-strand1585-15884105
β-strand1594-15974105
β-strand1602-16043105
α-helix1610-16178
α-helix1621-16244
α-helix1628-16314
β-strand1633-16353111
β-strand1640-16478112
α-helix1648-16503
β-strand1660-16667113
β-strand1674-16807113
β-strand1686-16938112
β-strand1705-17106113
β-strand17111114
β-strand17131114
β-strand17211115
β-strand1724-17274113
α-helix1729-17313
β-strand1733-17353113
β-strand17401115
β-strand1746-17494112
β-strand1755-17573111
α-helix1765-17695
α-helix1770-17745
α-helix1775-178511
α-helix1789-17968
β-strand18001116
β-strand1806-18072117
β-strand1810-18112117
α-helix18121
β-strand18161116
α-helix1819-18224
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
α-helix18971
β-strand1898193
α-helix18991
β-strand1906195
α-helix1907-19104
β-strand1949194
α-helix1954-197118
β-strand19741118
β-strand19801118
α-helix1987-19915
α-helix1992-200211
β-strand20171119
α-helix2019-210486
α-helix2109-213830
α-helix2141-21444
α-helix2151-21533
α-helix2156-21638
α-helix2164-21685
α-helix2169-224173
α-helix2248-228336
α-helix2294-22963
α-helix2300-23034
α-helix2306-232419
α-helix2327-23282
β-strand2329-23368120
α-helix2337-23415
α-helix2346-23483
α-helix2353-236210
β-strand2367-23704121
β-strand2373-23775121
β-strand2387-23926121
α-helix2393-23953
α-helix2399-24013
α-helix2404-24063
β-strand2410-24189120
β-strand24211122
β-strand2431-24355121
α-helix2441-24422
β-strand2447-24504121
β-strand24561120
β-strand24681119
α-helix2469-24702
β-strand24761120
β-strand2481-24866121
α-helix2500-25034
β-strand25041122
β-strand2508-25158120
Chain E: 116 helices, 98 β-strands
ElementResiduesLengthSheet
β-strand1031123
β-strand1111124
α-helix115-12612
α-helix138-1414
α-helix145-1473
β-strand1491125
α-helix153-1564
β-strand159-1602126
α-helix163-17513
α-helix176-1783
α-helix182-1843
α-helix185-1906
α-helix202-21312
α-helix219-2224
α-helix225-2284
α-helix233-2408
α-helix245-2517
α-helix257-2593
α-helix260-2678
α-helix273-2764
α-helix279-2868
α-helix290-2934
α-helix306-3083
β-strand3091127
β-strand312-3187127
β-strand325-33410127
β-strand341-3499128
β-strand352-3598128
β-strand367-3726127
β-strand376-3827127
α-helix384-3863
β-strand3871128
β-strand390-3967128
α-helix399-4024
β-strand406-4138127
β-strand419-4202127
β-strand423-4308127
α-helix432-4343
α-helix438-44912
α-helix454-46310
α-helix472-48716
α-helix492-4976
α-helix502-5043
α-helix514-5196
β-strand5311129
α-helix546-55510
α-helix559-56911
β-strand5811129
α-helix582-59615
α-helix603-61210
α-helix624-64421
α-helix648-6547
α-helix665-67713
α-helix688-69912
α-helix705-71814
α-helix727-73711
α-helix748-76922
α-helix773-7819
α-helix783-7864
α-helix793-7953
α-helix798-81417
α-helix815-8173
α-helix818-8269
α-helix835-8384
α-helix843-85412
α-helix864-8663
α-helix871-88717
α-helix892-8987
α-helix909-9113
α-helix912-92211
α-helix923-9253
α-helix928-95326
α-helix964-9718
β-strand982-9832126
α-helix985-100117
α-helix1010-10134
α-helix1016-10194
α-helix1021-10255
α-helix1028-103912
α-helix1041-10433
β-strand10461130
β-strand10491130
α-helix1055-106410
α-helix1071-108515
α-helix10911
β-strand1092-10987131
β-strand1107-11137131
β-strand1121-11277131
α-helix1128-11303
β-strand11311132
β-strand11361132
α-helix1138-11403
β-strand11411131
β-strand1145-11462131
β-strand1159-11635133
β-strand1166-117712133
β-strand1193-120210133
β-strand12031134
β-strand12091134
β-strand1213-12164133
α-helix1218-12225
α-helix1231-12322
β-strand1233-12386135
β-strand12391136
β-strand1245-12506135
α-helix1256-12594
β-strand1265-12695135
β-strand1275-12784135
α-helix1280-12889
β-strand12961137
β-strand12991137
β-strand1300-13012138
β-strand1303-13042131
β-strand13061136
β-strand1309-13113139
β-strand13161140
β-strand1321-13233139
β-strand13241141
β-strand1331-13322141
β-strand13361141
β-strand13371140
β-strand1340-13456142
β-strand1348-13536142
β-strand1356-13605141
α-helix1367-137711
β-strand1493-150412139
β-strand1507-15126139
α-helix1513-15164
α-helix1520-15223
β-strand1528-15314141
β-strand1535-15384142
α-helix1542-15443
β-strand15451139
β-strand1548-155912139
β-strand1564-157714139
β-strand1585-15884138
β-strand1594-15974138
β-strand1602-16043138
α-helix1610-16178
α-helix1621-16244
α-helix1627-16304
β-strand1634-16352143
β-strand1640-16478144
α-helix1648-16503
β-strand1660-16667145
β-strand1673-16808145
β-strand1686-16938144
β-strand1705-17106145
β-strand17111146
β-strand17131146
β-strand1724-17274145
α-helix1729-17313
β-strand1733-17353145
β-strand1746-17494144
β-strand1755-17562143
α-helix1765-17684
α-helix1769-17746
α-helix1775-178511
α-helix1789-17968
β-strand18001147
β-strand1806-18072148
β-strand1810-18112148
α-helix18121
β-strand18161147
α-helix1819-18224
α-helix1827-18282
α-helix1837-18437
α-helix1846-186823
α-helix1873-189018
α-helix1893-18953
β-strand18981123
β-strand19061125
α-helix1907-19104
β-strand19491124
α-helix1954-197118
β-strand19741149
β-strand19801149
α-helix1987-19915
α-helix1992-200312
α-helix2004-20063
β-strand20171150
α-helix2019-210486
α-helix2109-213729
α-helix2141-21466
α-helix2151-21533
α-helix2156-21627
α-helix2163-21686
α-helix2169-224375
α-helix2248-228336
α-helix2294-22963
α-helix2300-23034
α-helix2306-232419
α-helix2326-23283
β-strand2329-23368151
α-helix2337-23426
α-helix2346-23483
α-helix2353-236210
β-strand2367-23704152
β-strand2373-23775152
β-strand2387-23926152
α-helix2393-23953
α-helix2399-24013
α-helix2404-24063
β-strand2410-24189151
β-strand2431-24355152
α-helix2441-24422
β-strand2447-24504152
β-strand24561151
β-strand24681150
α-helix2469-24702
β-strand24761151
β-strand2481-24866152
α-helix2500-25034
β-strand2508-25158151
Chain F: 68 helices, 182 β-strands
ElementResiduesLengthSheet
α-helix13-153
β-strand27-282153
β-strand38-425153
β-strand56-605153
β-strand72-732153
β-strand78-814154
β-strand96-972154
β-strand103-1064154
β-strand111-1166154
β-strand119-13214154
β-strand1341155
β-strand140-1467154
β-strand154-1585154
β-strand1611155
β-strand164-1674154
α-helix171-1733
β-strand174-1763154
β-strand184-19310154
β-strand199-2068154
α-helix214-2185
β-strand227-23610154
α-helix246-2483
α-helix249-2513
α-helix253-2553
β-strand256-2638154
α-helix274-2763
β-strand285-2928156
β-strand299-3035156
β-strand307-3126154
α-helix314-3174
β-strand328-33912154
β-strand344-35411154
β-strand360-3623154
α-helix364-3652
β-strand366-3705154
β-strand380-3845157
β-strand396-3994158
β-strand408-4125158
β-strand417-4204158
β-strand422-4243159
β-strand4281160
β-strand4301160
β-strand433-4353159
β-strand439-4402158
β-strand444-445261
β-strand451-4544161
β-strand463-4675161
β-strand472-4765161
β-strand4771162
β-strand4831162
α-helix484-4863
β-strand487-4882161
β-strand492-493232
α-helix494-4974
β-strand502-5043163
β-strand513-5175163
β-strand521-5255163
β-strand5271164
β-strand5321164
α-helix533-5353
β-strand536-5394163
α-helix540-5412
β-strand556-5605165
β-strand569-5735165
β-strand578-5814165
β-strand583-5853166
β-strand588-5892166
β-strand593-5953165
α-helix602-6043
α-helix607-6093
β-strand610-6134167
α-helix6211
β-strand622-6265167
β-strand630-6345167
β-strand6361168
β-strand6421168
α-helix643-6453
β-strand646-6494167
α-helix650-6512
β-strand661-6655157
α-helix6731
β-strand674-6796157
β-strand685-6906157
β-strand699-7035154
β-strand708-7169154
α-helix717-72913
β-strand7381155
β-strand744-75310154
β-strand759-7624154
β-strand764-7718155
β-strand778-78811155
β-strand789-7913154
α-helix792-7932
β-strand804-8107155
α-helix818-8236
α-helix826-8272
β-strand838-8414155
β-strand8431169
β-strand8461169
β-strand8491155
α-helix855-8639
β-strand869-8768155
β-strand888-90013155
α-helix9071
β-strand908-92013155
β-strand929-9379155
β-strand946-9516155
α-helix952-9554
α-helix9681
α-helix973-9753
α-helix978-9814
β-strand983-99614155
β-strand1001-101616155
α-helix1018-10203
α-helix10221
α-helix1028-10314
β-strand1045-105511155
α-helix1062-10632
β-strand1071-108010155
α-helix1083-10886
α-helix1094-110310
β-strand1106-11094155
β-strand1121-11266155
β-strand1128-11314170
β-strand1140-11445170
β-strand1152-11565170
β-strand1163-11675170
β-strand1174-11796170
β-strand1184-11896170
β-strand1194-12007170
α-helix1202-12043
β-strand1206-12149170
β-strand1219-12213170
α-helix1223-12242
β-strand12491170
β-strand1251-12555171
α-helix1256-12594
β-strand12621172
α-helix1265-12717
α-helix1275-12817
β-strand12851173
β-strand12901172
β-strand12911173
α-helix1293-13019
α-helix1307-13137
β-strand1322-13287171
β-strand1339-13468171
β-strand1352-13598171
β-strand1362-13643174
β-strand13651171
β-strand1366-13672174
β-strand1373-13808174
β-strand1383-13875171
β-strand1390-13912175
β-strand1400-14012175
β-strand14021176
α-helix1403-14042
β-strand1405-14073171
α-helix1412-14143
α-helix1415-14217
β-strand14261176
β-strand1428-14314177
β-strand1437-14415177
β-strand1447-14526177
β-strand1456-14605177
α-helix1466-14694
α-helix1485-14884
β-strand1493-14975177
β-strand1503-15108177
β-strand1519-15279177
β-strand1533-15375177
α-helix1539-15479
α-helix1551-15533
β-strand1555-15595177
β-strand1565-15706177
β-strand1574-15807177
β-strand1586-15905177
β-strand1596-16016177
β-strand1610-16167177
β-strand1624-16318177
α-helix16321
α-helix1636-16394
β-strand1647-16515177
β-strand1655-16628177
β-strand1668-16758177
β-strand16761178
α-helix1689-16924
α-helix1693-16953
β-strand16961178
β-strand1701-17077177
β-strand1713-17175177
β-strand1723-17286177
β-strand1734-17407177
α-helix17411
α-helix17451
β-strand1746-175510177
β-strand1761-17666177
β-strand1771-17777177
β-strand1782-17909177
β-strand1795-180410177
β-strand1810-18156177
α-helix1818-18192
β-strand1832-18332177
β-strand1834-18363179
β-strand1842-18509179
α-helix1860-18634
β-strand18641180
α-helix18651
α-helix1866-18683
β-strand1872-188110179
β-strand1887-18948179
β-strand1899-19046179
β-strand1905-19073181
β-strand1914-19163181
α-helix1923-19253
α-helix1927-19293
β-strand19301182
β-strand19351183
β-strand19361182
β-strand19381184
β-strand19441184
β-strand1945-19473180
β-strand1953-19597180
α-helix1966-19672
β-strand1968-19747180
β-strand1980-19867180
β-strand19891185
β-strand19921185
β-strand1995-20017180
β-strand2004-20107180
β-strand2015-202410180
β-strand2032-20398180
β-strand2049-20557180
β-strand2061-20655180
β-strand2071-20777180
β-strand2083-20886180
α-helix2091-20944
β-strand2099-21013186
β-strand2104-21052186
β-strand21061187
α-helix21111
β-strand2112-21143187
β-strand2117-21204187
β-strand2125-21262187
β-strand21281183
α-helix2129-21313
β-strand21421187
α-helix2144-21463
α-helix2154-21563
α-helix2158-21603

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
TcdA1A, B, C, D, Eprotein2516Photorhabdus luminescensQ9RN43
TcdB2,TccC3Fprotein2439Photorhabdus luminescensQ8GF97 (AlphaFold model), Q8GF99
Sequence of entity 1 (A, B, C, D, E), FASTA
>6SUE_1 TcdA1 (chains A, B, C, D, E)
MNESVKEIPDVLKSQCGFNCLTDISHSSFNEFRQQVSEHLSWSETHDLYHDAQQAQKDNR
LYEARILKRANPQLQNAVHLAILAPNAELIGYNNQFSGRASQYVAPGTVSSMFSPAAYLT
ELYREARNLHASDSVYYLDTRRPDLKSMALSQQNMDIELSTLSLSNELLLESIKTESKLE
NYTKVMEMLSTFRPSGATPYHDAYENVREVIQLQDPGLEQLNASPAIAGLMHQASLLGIN
ASISPELFNILTEEITEGNAEELYKKNFGNIEPASLAMPEYLKRYYNLSDEELSQFIGKA
SNFGQQEYSNNQLITPVVNSSDGTVKVYRITREYTTNAYQMDVELFPFGGENYRLDYKFK
NFYNASYLSIKLNDKRELVRTEGAPQVNIEYSANITLNTADISQPFEIGLTRVLPSGSWA
YAAAKFTVEEYNQYSFLLKLNKAIRLSRATELSPTILEGIVRSVNLQLDINTDVLGKVFL
TKYYMQRYAIHAETALILCNAPISQRSYDNQPSQFDRLFNTPLLNGQYFSTGDEEIDLNS
GSTGDWRKTILKRAFNIDDVSLFRLLKITDHDNKDGKIKNNLKNLSNLYIGKLLADIHQL
TIDELDLLLIAVGEGKTNLSAISDKQLATLIRKLNTITSWLHTQKWSVFQLFIMTSTSYN
KTLTPEIKNLLDTVYHGLQGFDKDKADLLHVMAPYIAATLQLSSENVAHSVLLWADKLQP
GDGAMTAEKFWDWLNTKYTPGSSEAVETQEHIVQYCQALAQLEMVYHSTGINENAFRLFV
TKPEMFGAATGAAPAHDALSLIMLTRFADWVNALGEKASSVLAAFEANSLTAEQLADAMN
LDANLLLQASIQAQNHQHLPPVTPENAFSCWTSINTILQWVNVAQQLNVAPQGVSALVGL
DYIESMKETPTYAQWENAAGVLTAGLNSQQANTLHAFLDESRSAALSTYYIRQVAKAAAA
IKSRDDLYQYLLIDNQVSAAIKTTRIAEAIASIQLYVNRALENVEENANSGVISRQFFID
WDKYNKRYSTWAGVSQLVYYPENYIDPTMRIGQTKMMDALLQSVSQSQLNADTVEDAFMS
YLTSFEQVANLKVISAYHDNINNDQGLTYFIGLSETDAGEYYWRSVDHSKFNDGKFAANA
WSEWHKIDCPINPYKSTIRPVIYKSRLYLLWLEQKEITKQTGNSKDGYQTETDYRYELKL
AHIRYDGTWNTPITFDVNKKISELKLEKNRAPGLYCAGYQGEDTLLVMFYNQQDTLDSYK
NASMQGLYIFADMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRK
DYGWGDYYLSMVYNGDIPTINYKAASSDLKIYISPKLRIIHNGYEGQKRNQCNLMNKYGK
LGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQGRLLFHRDTTYPSKVEAWIPG
AKRSLTNQNAAIGDDYATDSLNKPDDLKQYIFMTDSKGTATDVSGPVEINTAISPAKVQI
IVKAGGKEQTFTADKDVSIQPSPSFDEMNYQFNALEIDGSGLNFINNSASIDVTFTAFAE
DGRKLGYESFSIPVTLKVSTDNALTLHHNENGAQYMQWQSYRTRLNTLFARQLVARATTG
IDTILSMETQNIQEPQLGKGFYATFVIPPYNLSTHGDERWFKLYIKHVVDNNSHIIYSGQ
LTDTNINITLFIPLDDVPLNQDYHAKVYMTFKKSPSDGTWWGPHFVRDDKGIVTINPKSI
LTHFESVNVLNNISSEPMDFSGANSLYFWELFYYTPMLVAQRLLHEQNFDEANRWLKYVW
SPSGYIVHGQIQNYQWNVRPLLEDTSWNSDPLDSVDPDAVAQHDPMHYKVSTFMRTLDLL
IARGDHAYRQLERDTLNEAKMWYMQALHLLGDKPYLPLSTTWSDPRLDRAADITTQNAHD
SAIVALRQNIPTPAPLSLRSANTLTDLFLPQINEVMMNYWQTLAQRVYNLRHNLSIDGQP
LYLPIYATPADPKALLSAAVATSQGGGKLPESFMSLWRFPHMLENARGMVSQLTQFGSTL
QNIIERQDAEALNALLQNQAAELILTNLSIQDKTIEELDAEKTVLEKSKAGAQSRFDSYG
KLYDENINAGENQAMTLRASAAGLTTAVQASRLAGAAADLVPNIFGFAGGGSRWGAIAEA
TGYVMEFSANVMNTEADKISQSETYRRRRQEWEIQRNNAEAELKQIDAQLKSLAVRREAA
VLQKTSLKTQQEQTQSQLAFLQRKFSNQALYNWLRGRLAAIYFQFYDLAVARCLMAEQAY
RWELNDDSARFIKPGAWQGTYAGLLAGETLMLSLAQMEDAHLKRDKRALEVERTVSLAEV
YAGLPKDNGPFSLAQEIDKLVSQGSGSAGSGNNNLAFGAGTDTKTSLQASVSFADLKIRE
DYPASLGKIRRIKQISVTLPALLGPYQDVQAILSYGDKAGLANGCEALAVSHGMNDSGQF
QLDFNDGKFLPFEGIAIDQGTLTLSFPNASMPEKGKQATMLKTLNDIILHIRYTIK
Sequence of entity 2 (F), FASTA
>6SUE_2 TcdB2,TccC3 (chains F)
MQNSQDFSITELSLPKGGGAITGMGEALTPTGPDGMAALSLPLPISAGRGYAPAFTLNYN
SGAGNSPFGLGWDCNVMTIRRRTHFGVPHYDETDTFLGPEGEVLVVADQPRDESTLQGIN
LGATFTVTGYRSRLESHFSRLEYWQPKTTGKTDFWLIYSPDGQVHLLGKSPQARISNPSQ
TTQTAQWLLEASVSSRGEQIYYQYRAEDDTGCEADEITHHLQATAQRYLHIVYYGNRTAS
ETLPGLDGSAPSQADWLFYLVFDYGERSNNLKTPPAFSTTGSWLCRQDRFSRYEYGFEIR
TRRLCRQVLMYHHLQALDSKITEHNGPTLVSRLILNYDESAIASTLVFVRRVGHEQDGNV
VTLPPLELAYQDFSPRHHAHWQPMDVLANFNAIQRWQLVDLKGEGLPGLLYQDKGAWWYR
SAQRLGEIGSDAVTWEKMQPLSVIPSLQSNASLVDINGDGQLDWVITGPGLRGYHSQRPD
GSWTRFTPLNALPVEYTHPRAQLADLMGAGLSDLVLIGPKSVRLYANTRDGFAKGKDVVQ
SGEITLPVPGADPRKLVAFSDVLGSGQAHLVEVSATKVTCWPNLGRGRFGQPITLPGFSQ
PATEFNPAQVYLADLDGSGPTDLIYVHTNRLDIFLNKSGNGFAEPVTLRFPEGLRFDHTC
QLQMADVQGLGVASLILSVPHMSPHHWRCDLTNMKPWLLNEMNNNMGVHHTLRYRSSSQF
WLDEKAAALTTGQTPVCYLPFPIHTLWQTETEDEISGNKLVTTLRYARGAWDGREREFRG
FGYVEQTDSHQLAQGNAPERTPPALTKNWYATGLPVIDNALSTEYWRDDQAFAGFSPRFT
TWQDNKDVPLTPEDDNSRYWFNRALKGQLLRSELYGLDDSTNKHVPYTVTEFRSQVRRLQ
HTDSRYPVLWSSVVESRNYHYERIASDPQCSQNITLSSDRFGQPLKQLSVQYPRRQQPAI
NLYPDTLPDKLLANSYDDQQRQLRLTYQQSSWHHLTNNTVRVLGLPDSTRSDIFTYGAEN
VPAGGLNLELLSDKNSLIADDKPREYLGQQKTAYTDGQNTTPLQTPTRQALIAFTETTVF
NQSTLSAFNGSIPSDKLSTTLEQAGYQQTNYLFPRTGEDKVWVAHHGYTDYGTAAQFWRP
QKQSNTQLTGKITLIWDANYCVVVQTRDAAGLTTSAKYDWRFLTPVQLTDINDNQHLITL
DALGRPITLRFWGTENGKMTGYSSPEKASFSPPSDVNAAIELKKPLPVAQCQVYAPESWM
PVLSQKTFNRLAEQDWQKLYNARIITEDGRICTLAYRRWVQSQKAIPQLISLLNNGPRLP
PHSLTLTTDRYDHDPEQQIRQQVVFSDGFGRLLQAAARHEAGMARQRNEDGSLIINVQHT
ENRWAVTGRTEYDNKGQPIRTYQPYFLNDWRYVSNDSARQEKEAYADTHVYDPIGREIKV
ITAKGWFRRTLFTPWFTVNEDENDTAAEVKKVKMPGSRPMKNIDPKLYQKTPTVSVYDNR
GLIIRNIDFHRTTANGDPDTRITRHQYDIHGHLNQSIDPRLYEAKQTNNTIKPNFLWQYD
LTGNPLCTESIDAGRTVTLNDIEGRPLLTVTATGVIQTRQYETSSLPGRLLSVAEQTPEE
KTSRITERLIWAGNTEAEKDHNLAGQCVRHYDTAGVTRLESLSLTGTVLSQSSQLLIDTQ
EANWTGDNETVWQNMLADDIYTTLSTFDATGALLTQTDAKGNIQRLAYDVAGQLNGSWLT
LKGQTEQVIIKSLTYSAAGQKLREEHGNDVITEYSYEPETQRLIGIKTRRPSDTKVLQDL
RYEYDPVGNVISIRNDAEATRFWHNQKVMPENTYTYDSLYQLISATGREMANIGQQSHQF
PSPALPSDNNTYTNYTRTYTYDRGGNLTKIQHSSPATQNNYTTNITVSNRSNRAVLSTLT
EDPAQVDALFDAGGHQNTLISGQNLNWNTRGELQQVTLVKRDKGANDDREWYRYSGDGRR
MLKINEQQASNNAQTQRVTYLPNLELRLTQNSTATTEDLQVITVGEAGRAQVRVLHWESG
KPEDIDNNQLRYSYDNLIGSSQLELDSEGQIISEEEYYPYGGTALWAARNQTEASYKTIR
YSGKERDATGLYYYGYRYYQPWIGRWLSSAPAGTIDGLNLYRMVRNNPVTLLDPDGLMPT
IAERIAALKKNKVTDSAPSPANATNVAINIRPPVAPKPSLPKASTSSQPTTHPIGAANIK
PTTSGSSIVAPLSPVGNKSTSEISLPESAQSSSSSTTSTNLQKKSFTLYRADNRSFEEMQ
SKFPEGFKAWTPLDTKMARQFASIFIGQKDTSNLPKETVKNISTWGAKPKLKDLSNYIKY
TKDKSTVWVSTAINTEAGGQSSGAPLHKIDMDLYEFAIDGQKLNPLPEGRTKNMVPSLLL
DTPQIETSSIIALNHGPVNDAEISFLTTIPLKNVKPHKR

Primary citation

Structure of a Tc holotoxin pore provides insights into the translocation mechanism. Roderer, D., Hofnagel, O., Benz, R. et al. Proc Natl Acad Sci U S A (2019) 116:23083-23090. DOI 10.1073/pnas.1909821116 · PubMed

Other PDB entries of the same protein (UniProt Q9RN43), best resolution first:

Browse structure collections

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