9CAD: TRRAP lobe of the native human TIP60 complex

Cryo-EM structure of the TRRAP lobe of the native human TIP60 complex (composite structure). Determined by electron microscopy at 3.05 Å resolution. Released 18 Jun 2025.

Method
Electron microscopy
Resolution
3.05 Å
Organism
Homo sapiens
Chains
2
Atoms
29,915
Mol. weight
779.48 kDa
Ligands
IHP
Released
18 Jun 2025

Explore 9CAD in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9CAD contains 258 α-helices and 31 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 13 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix2313-23153
α-helix2367-23693
α-helix2370-23789
α-helix2379-23835
α-helix2401-24099
α-helix2418-24247
α-helix2425-24295
α-helix2430-24334
α-helix2445-24528
α-helix2455-247319
α-helix2494-25018
α-helix2508-25103
α-helix2511-252919
Chain D: 245 helices, 31 β-strands
ElementResiduesLengthSheet
α-helix14-2815
α-helix35-4713
α-helix49-524
α-helix58-7518
β-strand8111
α-helix85-9915
α-helix104-1063
α-helix107-12317
β-strand12512
α-helix126-14217
α-helix145-1473
α-helix149-16921
α-helix170-1745
α-helix178-1803
α-helix187-1893
β-strand194-19961
β-strand209-21461
α-helix215-2162
β-strand21712
α-helix222-23817
α-helix244-2474
α-helix250-25910
α-helix264-2674
α-helix274-29421
α-helix299-3046
α-helix306-31914
α-helix325-33915
α-helix342-3476
α-helix351-3544
α-helix357-3604
α-helix365-3706
α-helix372-38615
α-helix392-40716
α-helix413-43725
α-helix441-45818
α-helix459-4635
α-helix464-4707
α-helix539-56426
α-helix568-5692
α-helix580-5823
α-helix583-59917
α-helix600-6045
β-strand605-60733
β-strand613-61533
α-helix616-6172
α-helix626-64015
α-helix644-66421
α-helix666-6683
α-helix669-6779
α-helix679-69517
α-helix697-7015
α-helix704-72320
α-helix725-74723
α-helix754-76714
α-helix773-7797
α-helix780-7823
α-helix783-79513
α-helix800-81112
α-helix817-8204
α-helix821-8233
α-helix824-83512
α-helix839-85517
α-helix858-8658
α-helix869-87911
α-helix885-89814
α-helix899-9024
α-helix905-9062
α-helix909-9113
β-strand923-92864
β-strand933-93864
α-helix940-95112
α-helix957-97317
β-strand97515
α-helix981-9888
α-helix992-9954
α-helix997-9993
α-helix1005-10073
α-helix1011-10122
α-helix1013-103018
α-helix1035-105723
α-helix1070-10723
α-helix1074-10763
α-helix1091-110111
α-helix1107-112620
α-helix1129-11335
α-helix1136-115015
α-helix1154-117017
α-helix1173-11786
α-helix1180-119314
α-helix1202-121817
α-helix1220-12223
α-helix1228-124821
α-helix1254-127118
α-helix1275-12795
α-helix1283-12864
α-helix1302-131716
α-helix1330-134415
α-helix1347-13515
α-helix1363-137412
α-helix1383-139412
α-helix1399-141315
α-helix1420-143314
α-helix1437-14393
α-helix1442-145413
α-helix1456-14583
α-helix1461-148424
α-helix1492-150312
α-helix1511-15133
α-helix1514-152815
α-helix1537-154610
α-helix1548-15558
α-helix1558-15625
α-helix1564-157411
α-helix1580-15878
α-helix1591-15966
α-helix1613-163422
α-helix1643-165412
α-helix1656-16638
α-helix1670-16734
α-helix1674-168815
α-helix1693-16986
α-helix1701-17044
α-helix1712-17165
α-helix1717-17215
α-helix1722-17254
α-helix1728-173912
α-helix1748-17547
α-helix1755-17595
α-helix1760-176910
α-helix1772-17765
α-helix1789-17924
α-helix1793-17975
α-helix1808-182417
α-helix1826-18294
α-helix1838-184710
α-helix1848-18514
α-helix1859-187517
α-helix1880-189112
α-helix1899-191618
α-helix1920-193415
α-helix1939-195113
α-helix1953-19564
α-helix1957-19593
α-helix1960-197617
α-helix1982-200625
α-helix2070-20723
α-helix2073-209018
α-helix2101-211515
α-helix2130-21367
α-helix2137-21393
α-helix2146-216217
α-helix2165-21728
α-helix2175-21828
α-helix2188-220417
α-helix2206-22083
α-helix2219-224123
α-helix2247-22493
α-helix2250-226011
α-helix2265-22695
α-helix2272-228716
α-helix2301-231313
α-helix2322-23276
α-helix2328-23336
α-helix2334-23396
α-helix2343-235816
α-helix2371-238818
α-helix2393-240816
α-helix2416-24205
α-helix2422-24298
α-helix2434-244613
α-helix2452-24576
α-helix2458-24625
α-helix2465-24684
α-helix2474-24829
β-strand249016
α-helix24911
β-strand250015
α-helix2501-25022
α-helix2505-25095
α-helix2512-25187
α-helix2568-258518
β-strand258816
α-helix2589-260214
α-helix2604-262017
α-helix2624-263916
α-helix2641-26488
α-helix2653-266210
α-helix2672-268110
α-helix2685-269814
α-helix2721-273616
α-helix2740-275011
α-helix2754-276411
α-helix2768-278619
α-helix2796-281217
α-helix2816-28238
α-helix2831-28377
α-helix2838-28414
α-helix2844-285613
α-helix2860-28623
α-helix2863-287614
α-helix2883-28853
α-helix2886-290217
α-helix2910-29123
α-helix2913-293422
α-helix2943-295816
α-helix2967-299024
α-helix2999-302123
α-helix3025-30328
α-helix3033-30375
α-helix3043-306119
α-helix3066-307813
α-helix3081-30833
α-helix3086-310318
α-helix3106-311914
α-helix3124-314118
α-helix3144-315714
α-helix3163-317614
α-helix3177-31793
α-helix3185-31939
α-helix3199-32024
α-helix3206-32149
α-helix3216-32194
α-helix3222-323110
α-helix3233-325422
α-helix3263-32653
α-helix3266-328116
α-helix3283-329513
α-helix3296-32994
α-helix3301-33022
α-helix3303-332422
α-helix3326-33283
β-strand333317
α-helix3336-334712
α-helix3366-337914
α-helix3382-339413
β-strand340417
α-helix3405-342319
β-strand3429-343138
α-helix3432-34343
α-helix3437-34415
α-helix34491
β-strand345019
α-helix34511
α-helix3464-34652
β-strand346619
β-strand3467-347048
β-strand3473-347978
β-strand3482-3491108
β-strand3496-350388
α-helix3507-352721
β-strand3545-354738
β-strand3552-355658
β-strand3561-3563310
α-helix3564-357512
α-helix3581-359515
α-helix3602-361514
α-helix3621-36299
α-helix3633-365624
β-strand3659111
α-helix3660-36612
β-strand3667-3670410
β-strand3676-3678310
β-strand3683111
β-strand3685112
β-strand3692112
α-helix3704-371411
α-helix3715-37195
α-helix3720-373011
α-helix3733-37353
α-helix3737-375620
α-helix3770-37745
α-helix3775-379723
α-helix3800-38023
α-helix3805-381410
α-helix3816-38194
α-helix3824-38263

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
E1A-binding protein p400Aprotein3159Homo sapiensQ96L91
Isoform 2 of Transformation/transcription domain-associated proteinDprotein3830Homo sapiensQ9Y4A5
Sequence of entity 1 (A), FASTA
>9CAD_1 E1A-binding protein p400 (chains A)
MHHGTGPQNVQHQLQRSRACPGSEGEEQPAHPNPPPSPAAPFAPSASPSAPQSPSYQIQQ
LMNRSPATGQNVNITLQSVGPVVGGNQQITLAPLPLPSPTSPGFQFSAQPRRFEHGSPSY
IQVTSPLSQQVQTQSPTQPSPGPGQALQNVRAGAPGPGLGLCSSSPTGGFVDASVLVRQI
SLSPSSGGHFVFQDGSGLTQIAQGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQ
SPAAAGGAGLQPLASPSHITTANLPPQISSIIQGQLVQQQQVLQGPPLPRPLGFERTPGV
LLPGAGGAAGFGMTSPPPPTSPSRTAVPPGLSSLPLTSVGNTGMKKVPKKLEEIPPASPE
MAQMRKQCLDYHYQEMQALKEVFKEYLIELFFLQHFQGNMMDFLAFKKKHYAPLQAYLRQ
NDLDIEEEEEEEEEEEEKSEVINDEVKVVTGKDGQTGTPVAIATQLPPKVSAAFSSQQQP
FQQALAGSLVAGAGSTVETDLFKRQQAMPSTGMAEQSKRPRLEVGHQGVVFQHPGADAGV
PLQQLMPTAQGGMPPTPQAAQLAGQRQSQQQYDPSTGPPVQNAASLHTPLPQLPGRLPPA
GVPTAALSSALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQLPIPPSQPAQLALH
VPTPGKVQVQASQLSSLPQMVASTRLPVDPAPPCPRPLPTSSTSSLAPVSGSGPGPSPAR
SSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATSSQDSSQDTLTEQITLENQ
VHQRIAELRKAGLWSQRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKL
VRTVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIECFWSNIEQVVEIKLRVELEEKR
KKALNLQKVSRRGKELRPKGFDALQESSLDSGMSGRKRKASISLTDDEVDDEEETIEEEE
ANEGVVDHQTELSNLAKEAELPLLDLMKLYEGAFLPSSQWPRPKPDGEDTSGEEDADDCP
GDRESRKDLVLIDSLFIMDQFKAAERMNIGKPNAKDIADVTAVAEAILPKGSARVTTSVK
FNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNW
GPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPNSFHVCITSYTQ
FFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWT
MVHFLVPGISRPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPFILRRTKRDVEKQLTKKY
EHVLKCRLSNRQKALYEDVILQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVEPRHPG
SSYVAGPLEYPSASLILKALERDFWKEADLSMFDLIGLENKITRHEAELLSKKKIPRKLM
EEISTSAAPAARPAAAKLKASRLFQPVQYGQKPEGRTVAFPSTHPPRTAAPTTASAAPQG
PLRGRPPIATFSANPEAKAAAAPFQTSQASASAPRHQPASASSTAASPAHPAKLRAQTTA
QASTPGQPPPQPQAPSHAAGQSALPQRLVLPSQAQARLPSGEVVKIAQLASITGPQSRVA
QPETPVTLQFQGSKFTLSHSQLRQLTAGQPLQLQGSVLQIVSAPGQPYLRAPGPVVMQTV
SQAGAVHGALGSKPPAGGPSPAPLTPQVGVPGRVAVNALAVGEPGTASKPASPIGGPTQE
EKTRLLKERLDQIYLVNERRCSQAPVYGRDLLRICALPSHGRVQWRGSLDGRRGKEAGPA
HSYTSSSESPSELMLTLCRCGESLQDVIDRVAFVIPPVVAAPPSLRVPRPPPLYSHRMRI
LRQGLREHAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLIL
SQMILMLDILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGI
NLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLKNGTKDLI
REVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEEFVVLSQEPSVTETIAPKIA
RPFIEALKSIEYLEEDAQKSAQEGVLGPHTDALSSDSENMPCDEEPSQLEELADFMEQLT
PIEKYALNYLELFHTSIEQEKERNSEDAVMTAVRAWEFWNLKTLQEREARLRLEQEEAEL
LTYTREDAYSMEYVYEDVDGQTEVMPLWTPPTPPQDDSDIYLDSVMCLMYEATPIPEAKL
PPVYVRKERKRHKTDPSAAGRKKKQRHGEAVVPPRSLFDRATPGLLKIRREGKEQKKNIL
LKQQVPFAKPLPTFAKPTAEPGQDNPEWLISEDWALLQAVKQLLELPLNLTIVSPAHTPN
WDLVSDVVNSCSRIYRSSKQCRNRYENVIIPREEGKSKNNRPLRTSQIYAQDENATHTQL
YTSHFDLMKMTAGKRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKPLPPIQVASLRAE
RIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQP
QPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTIA
GVPAATFQSINKRLASPVAPGALTTPGGSAPAQVVHTQPPPRAVGSPATATPDLVSMATT
QGVRAVTSVTASAVVTTNLTPVQTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKM
QKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQPPQQQSPQLTTVTAPRPGALLTGTTVA
NLQVARLTRVPTSQLQAQGQMQTQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAG
ISVAIGQPQKAAGQTVVAQPVHMQQLLKLKQQAVQQQKAIQPQAAQGPAAVQQKITAQQI
TTPGAQQKVAYAAQPALKTQFLTTPISQAQKLAGAQQVQTQIQVAKLPQVVQQQTPVASI
QQVASASQQASPQTVALTQATAAGQQVQMIPAVTATAQVVQQKLIQQQVVTTASAPLQTP
GAPNPAQVPASSDSPSQQPKLQMRVPAVRLKTPTKPPCQ
Sequence of entity 2 (D), FASTA
>9CAD_2 Isoform 2 of Transformation/transcription domain-associated protein (chains D)
MAFVATQGATVVDQTTLMKKYLQFVAALTDVNTPDETKLKMMQEVSENFENVTSSPQYST
FLEHIIPRFLTFLQDGEVQFLQEKPAQQLRKLVLEIIHRIPTNEHLRPHTKNVLSVMFRF
LETENEENVLICLRIIIELHKQFRPPITQEIHHFLDFVKQIYKELPKVVNRYFENPQVIP
ENTVPPPEMVGMITTIAVKVNPEREDSETRTHSIIPRGSLSLKVLAELPIIVVLMYQLYK
LNIHNVVAEFVPLIMNTIAIQVSAQARQHKLYNKELYADFIAAQIKTLSFLAYIIRIYQE
LVTKYSQQMVKGMLQLLSNCPAETAHLRKELLIAAKHILTTELRNQFIPCMDKLFDESIL
IGSGYTARETLRPLAYSTLADLVHHVRQHLPLSDLSLAVQLFAKNIDDESLPSSIQTMSC
KLLLNLVDCIRSKSEQESGNGRDVLMRMLEVFVLKFHTIARYQLSAIFKKCKPQSELGAV
EAALPGVPTAPAAPGPAPSPAPVPAPPPPPPPPPPATPVTPAPVPPFEKQGEKDKEDKQT
FQVTDCRSLVKTLVCGVKTITWGITSCKAPGEAQFIPNKQLQPKETQIYIKLVKYAMQAL
DIYQVQIAGNGQTYIRVANCQTVRMKEEKEVLEHFAGVFTMMNPLTFKEIFQTTVPYMVE
RISKNYALQIVANSFLANPTTSALFATILVEYLLDRLPEMGSNVELSNLYLKLFKLVFGS
VSLFAAENEQMLKPHLHKIVNSSMELAQTAKEPYNYFLLLRALFRSIGGGSHDLLYQEFL
PLLPNLLQGLNMLQSGLHKQHMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSQT
LVSQGLRTLELCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGG
SNRKMLKESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEKAIETALDCLKSANTEPYYR
RQAWEVIKCFLVAMMSLEDNKHALYQLLAHPNFTEKTIPNVIISHRYKAQDTPARKTFEQ
ALTGAFMSAVIKDLRPSALPFVASLIRHYTMVAVAQQCGPFLLPCYQVGSQPSTAMFHSE
ENGSKGMDPLVLIDAIAICMAYEEKELCKIGEVALAVIFDVASIILGSKERACQLPLFSY
IVERLCACCYEQAWYAKLGGVVSIKFLMERLPLTWVLQNQQTFLKALLFVMMDLTGEVSN
GAVAMAKTTLEQLLMRCATPLKDEERAEEIVAAQEKSFHHVTHDLVREVTSPNSTVRKQA
MHSLQVLAQVTGKSVTVIMEPHKEVLQDMVPPKKHLLRHQPANAQIGLMEGNTFCTTLQP
RLFTMDLNVVEHKVFYTELLNLCEAEDSALTKLPCYKSLPSLVPLRIAALNALAACNYLP
QSREKIIAALFKALNSTNSELQEAGEACMRKFLEGATIEVDQIHTHMRPLLMMLGDYRSL
TLNVVNRLTSVTRLFPNSFNDKFCDQMMQHLRKWMEVVVITHKGGQRSDGNEMKICSAII
NLFHLIPAAPQTLVKPLLEVVMKTERAMLIEAGSPFREPLIKFLTRHPSQTVELFMMEAT
LNDPQWSRMFMSFLKHKDARPLRDVLAANPNRFITLLLPGGAQTAVRPGSPSTSTMRLDL
QFQAIKIISIIVKNDDSWLASQHSLVSQLRRVWVSENFQERHRKENMAATNWKEPKLLAY
CLLNYCKRNYGDIELLFQLLRAFTGRFLCNMTFLKEYMEEEIPKNYSIAQKRALFFRFVD
FNDPNFGDELKAKVLQHILNPAFLYSFEKGEGEQLLGPPNPEGDNPESITSVFITKVLDP
EKQADMLDSLRIYLLQYATLLVEHAPHHIHDNNKNRNSKLRRLMTFAWPCLLSKACVDPA
CKYSGHLLLAHIIAKFAIHKKIVLQVFHSLLKAHAMEARAIVRQAMAILTPAVPARMEDG
HQMLTHWTRKIIVEEGHTVPQLVHILHLIVQHFKVYYPVRHHLVQHMVSAMQRLGFTPSV
TIEQRRLAVDLSEVVIKWELQRIKDQQPDSDMDPNSSGEGVNSVSSSIKRGLSVDSAQEV
KRFRTATGAISAVFGRSQSLPGADSLLAKPIDKQHTDTVVNFLIRVACQVNDNTNTAGSP
GEVLSRRCVNLLKTALRPDMWPKSELKLQWFDKLLMTVEQPNQVNYGNICTGLEVLSFLL
TVLQSPAILSSFKPLQRGIAACMTCGNTKVLRAVHSLLSRLMSIFPTEPSTSSVASKYEE
LECLYAAVGKVIYEGLTNYEKATNANPSQLFGTLMILKSACSNNPSYIDRLISVFMRSLQ
KMVREHLNPQAASGSTEATSGTSELVMLSLELVKTRLAVMSMEMRKNFIQAILTSLIEKS
PDAKILRAVVKIVEEWVKNNSPMAANQTPTLREKSILLVKMMTYIEKRFPEDLELNAQFL
DLVNYVYRDETLSGSELTAKLEPAFLSGLRCAQPLIRAKFFEVFDNSMKRRVYERLLYVT
CSQNWEAMGNHFWIKQCIELLLAVCEKSTPIGTSCQGAMLPSITNVINLADSHDRAAFAM
VTHVKQEPRERENSESKEEDVEIDIELAPGDQTSTPKTKELSEKDIGNQLHMLTNRHDKF
LDTLREVKTGALLSAFVQLCHISTTLAEKTWVQLFPRLWKILSDRQQHALAGEISPFLCS
GSHQVQRDCQPSALNCFVEAMSQCVPPIPIRPCVLKYLGKTHNLWFRSTLMLEHQAFEKG
LSLQIKPKQTTEFYEQESITPPQQEILDSLAELYSLLQEEDMWAGLWQKRCKYSETATAI
AYEQHGFFEQAQESYEKAMDKAKKEHERSNASPAIFPEYQLWEDHWIRCSKELNQWEALT
EYGQSKGHINPYLVLECAWRVSNWTAMKEALVQVEVSCPKEMAWKVNMYRGYLAICHPEE
QQLSFIERLVEMASSLAIREWRRLPHVVSHVHTPLLQAAQQIIELQEAAQINAGLQPTNL
GRNNSLHDMKTVVKTWRNRLPIVSDDLSHWSSIFMWRQHHYQAIVTAYENSSQHDPSSNN
AMLGVHASASAIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQL
AGVMGKNECMQGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMH
DVLVKAWAMWGDYLENIFVKERQLHLGVSAITCYLHACRHQNESKSRKYLAKVLWLLSFD
DDKNTLADAVDKYCIGVPPIQWLAWIPQLLTCLVGSEGKLLLNLISQVGRVYPQAVYFPI
RTLYLTLKIEQRERYKSDPGPIRATAPMWRCSRIMHMQRELHPTLLSSLEGIVDQMVWFR
ENWHEEVLRQLQQGLAKCYSVAFEKSGAVSDAKITPHTLNFVKKLVSTFGVGLENVSNVS
TMFSSAASESLARRAQATAQDPVFQKLKGQFTTDFDFSVPGSMKLHNLISKLKKWIKILE
AKTKQLPKFFLIEEKCRFLSNFSAQTAEVEIPGEFLMPKPTHYYIKIARFMPRVEIVQKH
NTAARRLYIRGHNGKIYPYLVMNDACLTESRREERVLQLLRLLNPCLEKRKETTKRHLFF
TVPRVVAVSPQMRLVEDNPSSLSLVEIYKQRCAKKGIEHDNPISRYYDRLATVQARGTQA
SHQVLRDILKEVQSNMVPRSMLKEWALHTFPNATDYWTFRKMFTIQLALIGFAEFVLHLN
RLNPEMLQIAQDTGKLNVAYFRFDINDATGDLDANRPVPFRLTPNISEFLTTIGVSGPLT
ASMIAVARCFAQPNFKVDGILKTVLRDEIIAWHKKTQEDTSSPLSAAGQPENMDSQQLVS
LVQKAVTAIMTRLHNLAQFEGGESKVNTLVAAANSLDNLCRMDPAWHPWL

Ligands and cofactors

IDNameFormulaCopies
IHPInositol hexakisphosphateC6 H18 O24 P61

Primary citation

Structural divergence of H2A.Z-associated human chromatin remodelers SRCAP and TIP60. Park, G., Patel, A.B., Wu, C. et al. To be published.

Other PDB entries of the same protein (UniProt Q96L91), best resolution first:

Browse structure collections

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