9H4Q: SEAC wing - EGOC

Cryo-EM structure of the SEAC wing - EGOC. Determined by electron microscopy at 3.1 Å resolution. Released 5 Nov 2025.

Method
Electron microscopy
Resolution
3.1 Å
Organism
Saccharomyces cerevisiae
Chains
9
Atoms
27,485
Mol. weight
635.65 kDa
Ligands
MG, AF3, GDP
Released
5 Nov 2025

Explore 9H4Q in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9H4Q contains 146 α-helices and 176 β-strands across 9 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain a: 13 helices, 11 β-strands

ElementResiduesLengthSheet
β-strand6-13811
α-helix19-268
α-helix33-353
α-helix40-423
β-strand45-51711
β-strand55-61711
α-helix66-727
α-helix77-804
β-strand86-92711
α-helix98-11518
β-strand120-126711
α-helix133-1353
α-helix136-15116
β-strand160-163411
α-helix170-18011
α-helix186-20015
β-strand202-208712
β-strand215-218412
α-helix242-25716
α-helix258-2603
β-strand264-269612
β-strand273-276412
β-strand284-288512
α-helix295-30410
Chain c: 9 helices, 10 β-strands
ElementResiduesLengthSheet
β-strand11-16613
α-helix22-3110
β-strand61-64413
α-helix69-713
α-helix77-815
β-strand83-91913
α-helix97-11317
β-strand118-124713
α-helix131-15121
β-strand159-163513
α-helix170-18011
α-helix186-19813
β-strand202-209812
β-strand217112
α-helix225-24420
β-strand270-275612
β-strand280-285612
β-strand290-296712
α-helix303-32321
Chain C: 13 helices, 37 β-strands
ElementResiduesLengthSheet
β-strand19-2021
β-strand29-3242
β-strand38-4362
β-strand46-5162
α-helix58-592
β-strand60-6342
α-helix69-702
β-strand73-7533
β-strand84-8963
β-strand92-9763
β-strand106-11053
β-strand117-12264
β-strand129-13464
β-strand138-14364
β-strand152-15544
β-strand161-16665
β-strand173-17865
β-strand181-18665
β-strand195-19735
β-strand204-20966
β-strand216-22166
β-strand225-23066
β-strand240-24346
β-strand248-25367
β-strand259-26467
β-strand273-27647
β-strand288-29036
β-strand293-29647
β-strand304-31071
β-strand325-33061
β-strand335-33951
α-helix342-3476
α-helix359-3613
α-helix371-3733
α-helix385-3873
β-strand39118
α-helix393-3964
α-helix398-3992
α-helix402-4076
β-strand411-41221
α-helix430-44011
β-strand445-45069
β-strand455-45959
β-strand460-462310
β-strand473-475310
β-strand478-48039
α-helix490-4923
β-strand493-49539
α-helix504-52118
α-helix530-5378
Chain h: 30 helices, 22 β-strands
ElementResiduesLengthSheet
β-strand10-191014
β-strand22-28714
α-helix34-385
α-helix368-3769
α-helix384-3863
α-helix388-3903
β-strand396-397221
β-strand400-401221
α-helix402-4087
β-strand422-423214
β-strand428-430314
β-strand434-435214
α-helix522-5298
β-strand532-539814
α-helix546-5538
α-helix554-5585
α-helix559-57113
α-helix575-59016
α-helix595-5984
α-helix602-61615
α-helix619-63113
α-helix6351
β-strand636-640522
β-strand644-648522
β-strand655-656223
β-strand672-673223
α-helix679-6846
α-helix744-7463
β-strand748-751424
α-helix755-7628
α-helix772-78110
α-helix789-7924
α-helix793-7997
α-helix816-83015
β-strand834-837424
β-strand845125
β-strand846-848326
α-helix890-90112
α-helix908-9169
β-strand922125
α-helix923-9253
α-helix933-94614
β-strand949-951326
β-strand953-96088
α-helix962-97312
β-strand1071-107338
α-helix1081-10899
α-helix1096-11049
β-strand111018
α-helix1115-11228
α-helix1126-113510
β-strand1140-114568
Chain R: 4 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix46-6823
α-helix74-785
β-strand83-84244
α-helix88-9912
β-strand142-143245
α-helix154-17118
Chain T: 25 helices, 18 β-strands
ElementResiduesLengthSheet
α-helix8-114
β-strand13-20814
β-strand24-31814
α-helix35-395
α-helix47-504
β-strand61-65514
β-strand68-72514
β-strand75-78414
β-strand82115
α-helix83-853
β-strand86-961114
α-helix105-12218
α-helix127-1293
α-helix132-1343
β-strand135115
α-helix197-21014
β-strand213-217516
β-strand223-227516
α-helix229-2313
β-strand243-245317
α-helix261-2666
α-helix267-2693
α-helix276-2827
α-helix287-29913
β-strand305-307317
α-helix308-3092
β-strand316-317218
α-helix323-3264
α-helix331-3377
β-strand339119
α-helix345-3484
α-helix432-4343
α-helix435-4428
α-helix451-4577
α-helix461-4644
β-strand467119
α-helix469-47810
β-strand482-483218
β-strand487-491520
α-helix570-58112
α-helix586-5938
α-helix597-60711
β-strand610-614520
Chain U: 3 helices, 5 β-strands
ElementResiduesLengthSheet
β-strand11-16645
β-strand21-24445
α-helix26-305
α-helix32-343
α-helix35-384
β-strand49-53545
β-strand56-63845
β-strand66-73845
Chain X: 43 helices, 61 β-strands
ElementResiduesLengthSheet
β-strand102-105427
β-strand106-109428
β-strand118-120328
β-strand133-135329
β-strand153-155329
α-helix158-1603
α-helix161-1655
β-strand172-175428
α-helix178-1836
β-strand190-193427
β-strand203130
β-strand206-207231
β-strand210132
α-helix218-22710
β-strand231-234430
β-strand240-241233
β-strand245-246233
β-strand252-254331
β-strand257-259331
β-strand261-264430
β-strand269-270231
β-strand273132
β-strand278-285834
β-strand292135
β-strand298135
α-helix299-3024
α-helix303-3075
α-helix308-31710
β-strand323-324234
β-strand326-333834
α-helix339-3413
β-strand351-357734
β-strand362-363234
α-helix364-3663
α-helix367-37913
α-helix381-3866
β-strand387-389336
β-strand395-397336
β-strand400-401234
α-helix402-4032
α-helix409-4168
α-helix425-4273
β-strand434-440734
β-strand445-447337
α-helix450-46011
β-strand467-471534
β-strand482-486537
β-strand492-497637
β-strand500-504534
α-helix523-5264
α-helix533-5353
α-helix541-5444
α-helix553-56210
β-strand848-851437
α-helix862-8654
α-helix872-8743
α-helix886-8905
α-helix8921
β-strand893132
α-helix894-8963
β-strand898-899238
α-helix905-9084
β-strand917-919338
α-helix925-9273
α-helix932-94312
β-strand949-951338
α-helix954-9618
β-strand985-989538
β-strand993-998638
β-strand1005-1011738
α-helix1012-10143
β-strand1028-1030334
α-helix1050-10523
α-helix1054-10618
β-strand1076-1082739
α-helix1087-10882
α-helix1108-112215
β-strand1124140
α-helix1128-11325
α-helix1139-11457
β-strand1146-1147241
α-helix1152-11565
β-strand1341-1342242
β-strand1344-1348539
β-strand1349140
β-strand1364-1368539
β-strand1370-1371241
β-strand1372143
β-strand1375143
β-strand1377-1383739
α-helix1390-140415
β-strand1409-1412439
α-helix1417-14193
β-strand1430-1432343
α-helix1447-14526
α-helix1456-14649
β-strand1467-1469343
β-strand1486-1487242
β-strand1498-1502543
β-strand1507-1511543
β-strand1517-1521543
α-helix1523-15286
α-helix1550-156011
α-helix1562-157716

1 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Maintenance of telomere capping protein 5Cprotein1148Saccharomyces cerevisiaeQ03897 (AlphaFold model)
GTP-binding protein GTR1aprotein310Saccharomyces cerevisiaeQ00582 (AlphaFold model)
GTP-binding protein GTR2cprotein341Saccharomyces cerevisiaeP53290 (AlphaFold model)
Nitrogen permease regulator 2Tprotein615Saccharomyces cerevisiaeP39923 (AlphaFold model)
Nitrogen permease regulator 3hprotein1146Saccharomyces cerevisiaeP38742
Vacuolar membrane-associated protein IML1Xprotein1584Saccharomyces cerevisiaeP47170
Protein MEH1Rprotein184Saccharomyces cerevisiaeQ02205
Protein EGO2Uprotein75Saccharomyces cerevisiaeQ3E830
Protein SLM4Yprotein162Saccharomyces cerevisiaeP38247
Sequence of entity 1 (C), FASTA
>9H4Q_1 Maintenance of telomere capping protein 5 (chains C)
MCSSINEGPYNSPTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPR
WLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDI
NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN
DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR
TVTTNFPIWRGRYLPFGEGYCIMPMVGGNNAVYLINLCDDDDSEQNKKTKLQPIYAFKGH
SDRVIDFLWRSRHTCDGDYDDREFQLVTWSKDCDLKLWPISDSIYGKVNFDRGKRLEEKL
PDYDYCSYNKEPENRENVQKNEFRRLRENFVTTSGLKKNKTNHITWLSGIRMNSATSQED
LFNETKIQNLGEEVSAIGHKFPKVVFEKISVSTRELCLTLNGPWSEENPDDYIFLRISIN
FPLNYPNKGDPPKFTIEENSNLTMSKRQEILSNLATIGQKYTDSNLYCLEPCIRFVLGEK
VSLEDIEEGQEPLLNFDIADHIDFEELSSLDSSYSDSQNPENLSSQSDIESYKEALVFPD
TSNQGLDFGRNLALDTTPVPNGCGSCWTATGELFCFFANEKKPEKKQNAIIKLSQKEAGV
EKHPFKIEPQVLYDKEVDSSVITAADELKARPKRYVDTLGLGGGTNGDSRTYFDDETSSD
DSFDSVADDWDDILRNDIIVRTKIPILRGNFKAFSSVHSESGKTVESTKKNKNLVISKNF
SSLLSDRKELALEYLFMDATPEGFARNNALVAEKFDLDEISHCWQILSDMLIDQSDYDPY
TTIWNNHPMGIKWFIKEAIVYFERQQNLQMLAMLCCVILSARRKKIPARYYGQELENMEG
TIVFNDNESQNTSFWKGSDAFSTRSRSSTVTPNFYGNHLRGKNIHGGDNSSIRSDDHHAR
LRTHNTLNGSSKFTEPAQKQGSRAISSSPFHSRMPDIKVELLHDDIIEAYEQEDLLHLEV
SDIPKFQTYIYQYSKLLFRWGLPLERVKILKVSTDFRSSYSSQGIPPNNNKKSPYNGVLT
HWIENNEFGEEKFLARNCNYCDLRVTRSSFICGNCQHVLHSSCARIWWEIGDECPSGCGC
NCPEMFDA
Sequence of entity 2 (a), FASTA
>9H4Q_2 GTP-binding protein GTR1 (chains a)
MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW
DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK
IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC
SLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDP
KRFEKISNIMKNFKQSCTKLKSGFKTLILNNNIYVSELSSNMVCFIVLKDMNIPQELVLE
NIKKAKEFFQ
Sequence of entity 3 (c), FASTA
>9H4Q_3 GTP-binding protein GTR2 (chains c)
MSLEATDSKAMVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAV
MELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIE
VLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQ
KLIPELSFLENMLDNLIQHSKIEKAFLFDVNSKIYVSTDSNPVDIQMYEVCSEFIDVTID
LFDLYKAPVLRNSQKSSDKDNVINPRNELQNVSQLANGVIIYLRQMIRGLALVAIIRPNG
TDMESCLTVADYNIDIFKKGLEDIWANARASQAKNSIEDDV
Sequence of entity 4 (T), FASTA
>9H4Q_4 Nitrogen permease regulator 2 (chains T)
MLSYFQGFVPIHTIFYSVFHPTEGSKIKYEFPPNNLKNHGINFNTFKNYIIPKPILCHKL
ITFKYGTYRIVCYPVTINSPIYARNFFSFNFVFVFPYDCETSPYEPAITRLGKMFKVLEE
QNQLLSKSERDPVFFDLKVLENSTTTPSTAGPSSTPNPSSNTTPTHPTSEKDTKDMRSSR
YSDLIKDLGLPQSAFSIQDLLMRIFQDLNNYSECLIPIDEGNAVDIKIFPLLRPPTTCVS
LEDVPLSSVNLKKIIDVNWDPTMMSIVPYIDGLNSIAKISKLSNSDPGLVIECIRHLIYY
KCVTLSDIFQFSNIYAPSSLIRNFLTDPLMASDCQSYVTFPEVSKISNLPLNKSLGSGDQ
DSPSFSVRRKSKSSSIPSNPDSRTTSFSSTSRVSQNSSLNSSFSSIYKDWRQSQTSCSSS
NIHVINNRNRFLPTRSCLFDLYRSLSQGQTLKTWYESKYMILKENNIDIRRFITFGLEKR
IIYRCYSFPVMINAGSREPKEMTPIITKDLVNNDKLLEKRNHNHLLSATGSRNTAQSGNL
KPERPSKVSFEMQRVSSLATGKSTMPKLSDEEEGILEESIRNAETFDKICVLLSKPKLEV
ESYLNELGEFKVINS
Sequence of entity 5 (h), FASTA
>9H4Q_5 Nitrogen permease regulator 3 (chains h)
MDECLPNSCLLGVHLVISTHSGPQIVYHYPPSNTAFLTNNPTKHQHLYGNHANLNKNTST
NKEEKLFNSGSTKTASQIALNESAKSYNTAITPSMTNTNTNNVTLPPTRSHANTVGSQSS
IPAATNGVGYRKTDIEDTSRTFQYQETESETSSSGLSDSELSTDYLDISSDSFSISSSLS
SSSLSSSPSSSSSSSPPQDGLSRTNSSFQSTDSMSPTSPQMIMENDSISVAESYLDSGTN
NKSRAASKRSQNFFHKLSTKKSTDSKTHSPVRKLKSKPSQSTKKGNKLLKNTSNETDGNA
FTGSCSISSKKSLSSTGEHNQELRNSSLNDTPGQSPHHYHHRYHHYHKNAATSQRNSHTQ
YDVEEEDMEVSAMLQDGKISMNEIFFEEENFQDINKILEFDNDFVAEFCSPEREMCNTRF
EFTVDNFCFLGLPIHVDSQGRWRKSKHKNKTRSKRSSSTTTNISRKKSIASKISSLSENT
LKKVNSGEADTVYDSNIGHEASTDTPNLRINTDVSGNEFEREKEDLGKNMNMFHVCFVMN
PHLIEYNKRIDDMYQFVVTRLSLLLRYVQSKTSYISSECHIILKEKERVLKHSKTYQSIR
GAGNKGKYLYQRILAKSSLARALTECVDKIQRNEIACLEINDDKVISLQIPIQNEFEKMP
NFKLQPVLRGSYLTSILNMKFLEKSSLRIESQNRQNDQAQFSDTNNNIYRFGNNINSTGH
CGAANVDDGDDNESNYYCDDNDDLLNYALLLLDEPNNIISSLETFSYQDDIGTIILKHLV
RNIQPNIPLRSYRYLITDLLDNPSSLDDLTTETNSLESSILRSCALHLMYWRHARIVIPL
SSKYTYIVSPLAPIQGYTIDDYKSTSQNDGNVKKMDDRENNKSGSDRVPLIYQNSMLFRS
KFPSLPSLPIFLSLLSTDKPQAYSNIIPSREHKPVYLNALAWLIQYGYVTQLLTFINIRV
DKHIKMAVDEDLEKEGFRKTNTARRPSMDYKKTDKKLDDEDGQSRDANASEACSGKNEGM
QSNDNNKDVDEKDNENDSRVDDRDDNEIAIADEEEILHFEYDDPEMQHDYTIILEPERAT
AIEKRWLYRCIYGQPSDIQILFNKLLKYFNGKVPMELVIIKEEISRHDLKKLLNALDKYL
IEIHHW
Sequence of entity 6 (X), FASTA
>9H4Q_6 Vacuolar membrane-associated protein IML1 (chains X)
MFAKLHGKKQRPISSINSQTPRTSNTTHANSISLSSGNLIVGSNRNLRQKKEQFGSQQRA
SGRKLISNKENDDNVNNGGDNNYDNGERVHRHHIPGLKIKAYQAELGYHESRFSENLVML
NLVEFPDIKPGDLVELKTYHKNPSASNGDKKIYFIAKDFDGETKRRAKTSNVSILSGQLQ
TLLDLPSRSRIWIKLKPNKFDLQADVVEFNIKDCLLNRGDMWVLSSKLVDTCVFMDQRLA
FLDSIRGTIKGIYRNGKKIVSGYIGEQTRIIFRSESARLIFLIQITDEMWNFEETGEQLF
QKMVNSFFPKIFKKWKDVDTHHTITIAFAISMDLSDTSFKDLTPGESLKNSQDYFRIVVD
QVSIIHWVDIMETLREEFMEIRKDLLNKQTDKGYSVANGRFSPVIKSNFLELVNFATTIL
TDPFKQLDLRHTTTHVMIISPGSGLFDVDYSLLRLTGKKLLSLEMTMDLICLSKAPLHIV
PLFRYRDFENKLHHCVPLWLSVFFWNDHDKKSNSEWTPRCKIYDLQMMGITENELIREVD
VEYLQLNKKVKSLSEFMNDYDKNAFEVKILCAGSNTKQSKKLNSKFDTVFENDVVVKARK
IPATATTTHGNTKFIWRGPKVALPAIKDIQKPNVIPDLSIKTIEASFYDDCNTTNDKIST
PTTSNNDNLEMNDSLVSVRSADNQNTSLALDSLKGLSKRNSLKDFTQRVITKFISNIDTS
KNKKIKSTLLRDDVDNSPLGSNTPLPSSESKISGLKLQQKGLADENVISKRGNLIIKKNL
SIFGLPSNEIMSGSPSSYLGSSHTRTSSKLSNMSDKAAFITEGQKSKHDDSNTYSLTQQL
KHRISETWVDIKSPSIPVSSEFANELLPIRWKDVWPKYVARKYSKWRSFTTPAELPITIS
DFPSKDDFDRNFIFRNHSVTLNTDQEQYNQTYKDLLRDMIYMRLLTGFQICVGRQVEKIE
LSRESGESETVVNKYLDFNQNDAFKLYLMIDSEIHRITCSSSGIIDVERYLRKDEANLFD
QVPSYIPLVKTRYESSFRDAMIDPLHVKRESLNWNQIDQVLAGYGDNLIDRKWHGFRAKY
VVLPTDIPPNTYSMVINGKSETLNPEEIRVEGLRRLIGSITRSRLRTEKEKKGRKTKREE
IQPEVMFYTGPLYNFINEQQTSLESSAINFKDSIFVNDNNLLNRNVELSKLAYQIQRGED
RITLVNRKWHWKKHEKCFVGSEMVNWLIRNFSDIDTREDAIKYGQKVMKEGLFVHVLNKH
NFLDGHYFYQFSPEYVMDTNKLEKTNSHRSTLSDPKQMLRKASTGSSNDPSAMTPFSSVV
PAISASNASVADAKEPSRPILMLSNSLVIDVDPAGKSSKQESCTVHYDRVHNPDHCFHIR
LEWLTTTPKLIDDLVGNWSRLCERYGLKMIEIPWEELCTIPSVNPFHSFVEIKLAINPWE
DPEFKDRELFAKSKFYYHVYLLKASGFLLDNRASKFLQNQDIEFDIMYSWGKPQFKYVQY
IHHTGAYVAELRENGCLFLAPNNIYISRVNPGNIIGKIHSASSSSLDAQKVILNFKSTCL
DYQKLRSIFLDAKEMWITGKIVED
Sequence of entity 7 (R), FASTA
>9H4Q_7 Protein MEH1 (chains R)
MGAVLSCCRNHSGEENEALLREQQAGYGSQGNANDEYDAEQMRLKEHEHEQKLLAREQEL
RDIVANTNDKLIDISMINNSGIVIQGTDLQEALDKRQQEEGGDSREDERSAGDDNLSGHS
VPSSGSAQATTHQTAPRTNTFTLLTSPDSAKISKEQLKKLHSNILNEIFSQSQVNKPGPL
TVPF
Sequence of entity 8 (U), FASTA
>9H4Q_8 Protein EGO2 (chains U)
MEAEKQSDIKGTIAFDTHGNVIESTGVGSQRIEDIGDLSKVTLDAEGFAQVQGDSLLVHL
YKRNDITLAVYTSAQ
Sequence of entity 9 (Y), FASTA
>9H4Q_9 Protein SLM4 (chains Y)
MVMLHSKNVKGFLENTLKPYDLHSVDFKTSSLQSSMIITATNGGILSYATSNNDVPKNSI
NEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKIYTYEMEDLHTCVA
QIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFGYKLG

Ligands and cofactors

IDNameFormulaCopies
MGMagnesium ionMg1
AF3Aluminum fluorideAl F31
GDPGuanosine-5'-diphosphateC10 H15 N5 O11 P22

Primary citation

Structure and function of the yeast amino acid-sensing SEAC-EGOC supercomplex. Tafur, L., Bonadei, L., Zheng, Y. et al. Nat Struct Mol Biol (2026) 33:488-498. DOI 10.1038/s41594-026-01746-2 · PubMed

Other PDB entries of the same protein (UniProt Q03897 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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