Cytoplasmic dynein 1 light intermediate chain 2 (DYNC1LI2) is a 492-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: O43237.
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The mean pLDDT of this model is 61.5 (low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 1% |
| 70 to 90 | Confident: backbone generally right | 43% |
| 50 to 70 | Low: treat with caution | 23% |
| Below 50 | Very low: often disordered regions | 33% |
What pLDDT means and how to read it
Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes
Homodimer. The cytoplasmic dynein 1 complex consists of two catalytic heavy chains (HCs) and a number of non-catalytic subunits presented by intermediate chains (ICs), light intermediate chains (LICs) and light chains (LCs); the composition seems to vary in respect to the IC, LIC and LC composition. The heavy chain homodimer serves as a scaffold for the probable homodimeric assembly of the…
Cytoplasm, cytoskeleton
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7Z8I | EM | 3.3 Å | j/r=1-492 |
| 6F1Y | EM | 3.4 Å | j=37-373 |
| 6F1T | EM | 3.5 Å | i/j/q/r=1-492 |
| 9BLY | EM | 3.5 Å | E/F=1-492 |
| 8PR2 | EM | 3.8 Å | j=1-492 |
| 8PR3 | EM | 3.9 Å | E/F/j=1-492 |
| 7Z8J | EM | 3.93 Å | j/r=1-492 |
| 7Z8K | EM | 4.37 Å | i=1-492 |
| 9E28 | EM | 4.4 Å | B/C=1-492 |
| 9E12 | EM | 4.5 Å | E/F=1-492 |
| 9E13 | EM | 4.5 Å | E/F=1-492 |
| 7Z8L | EM | 4.9 Å | q=1-492 |
| 9E14 | EM | 5.0 Å | E/F=1-492 |
| 9YNH | EM | 5.5 Å | E/F=1-492 |
| 9E23 | EM | 6.2 Å | B/C=1-492 |
| 9HHL | EM | 6.53 Å | j/q/u=1-492 |
| 6F38 | EM | 6.7 Å | i/j/q/r=1-492 |
| 6F3A | EM | 8.2 Å | j=1-492 |
| 8PR1 | EM | 8.2 Å | F/H=1-492 |
| 9YNE | EM | 8.46 Å | u=1-492 |
Showing 20 of 23 experimental structures (best resolution first).
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