Protein SLM4 (SLM4) is a 162-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P38247.
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The mean pLDDT of this model is 89.9 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 70% |
| 70 to 90 | Confident: backbone generally right | 24% |
| 50 to 70 | Low: treat with caution | 6% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
Component of the GSE complex, a GTPase complex required for intracellular sorting of GAP1 out of the endosome (PubMed:16732272). Component of the EGO complex, a complex involved in the regulation of microautophagy (PubMed:15989961)
Component of the GSE complex composed of GTR1, GTR2, SLM4, MEH1 and LTV1 (PubMed:16732272). Component of the EGO complex, at least composed of GTR2, SLM4 and MEH1 (PubMed:15989961)
Vacuole membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 4FTX | X-ray | 2.1 Å | A/B=1-162 |
| 4XPM | X-ray | 2.4 Å | C=1-162 |
| 4FUW | X-ray | 2.6 Å | A/B=1-162 |
| 3LGO | X-ray | 2.85 Å | A=1-162 |
| 9H4Q | EM | 3.1 Å | Y=1-162 |
| 6JWP | X-ray | 3.2 Å | E/J=1-162 |
| 9H5K | EM | 3.2 Å | Y/Z=1-162 |
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