1WDC: Scallop myosin regulatory domain

Scallop myosin regulatory domain. Determined by X-ray diffraction at 2.0 Å resolution. Released 11 Jul 1996.

Method: X-ray diffraction
Resolution: 2.0 Å
Organism: Argopecten irradians
Chains: 3
Atoms: 3,063
Mol. weight: 43.26 kDa
Ligands: MG, CA
Released: 11 Jul 1996

Explore 1WDC in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1WDC contains 20 α-helices and 7 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 2 helices, 0 β-strands

Element	Residues	Length	Sheet
α-helix	776-822	47
α-helix	825-833	9

Chain B: 9 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	14-27	14
α-helix	37-47	11
α-helix	50-52	3
α-helix	53-60	8
α-helix	69-79	11
α-helix	86-94	9
β-strand	104-105	2	1
α-helix	106-115	10
α-helix	122-131	10
β-strand	134-135	2	1
β-strand	138-139	2	1
α-helix	141-149	9

Chain C: 9 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	5-21	17
β-strand	28-29	2	2
α-helix	30-32	3
α-helix	33-39	7
α-helix	46-51	6
β-strand	62-63	2	2
α-helix	65-75	11
α-helix	83-91	9
β-strand	100-102	3	3
α-helix	103-112	10
α-helix	119-129	11
β-strand	138-140	3	3
α-helix	141-150	10

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Scallop myosin	A	protein	64	Argopecten irradians	P24733 (AlphaFold model)
Scallop myosin	B	protein	156	Argopecten irradians	P13543 (AlphaFold model)
Scallop myosin	C	protein	156	Argopecten irradians	P07291 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>1WDC_1 SCALLOP MYOSIN (chains A)
RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKV
KPLL

Sequence of entity 2 (B), FASTA

>1WDC_2 SCALLOP MYOSIN (chains B)
ADKAASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML
KEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF
NKDEMRMTFKEAPVEGGKFDYVKFTAMIKGSGEEEA

Sequence of entity 3 (C), FASTA

>1WDC_3 SCALLOP MYOSIN (chains C)
PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGE
KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE
DVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPDK

Ligands and cofactors

ID	Name	Formula	Copies
MG	Magnesium ion	Mg	1
CA	Calcium ion	Ca	1

Primary citation

Structure of the regulatory domain of scallop myosin at 2 A resolution: implications for regulation. Houdusse, A., Cohen, C. Structure (1996) 4:21-32. DOI 10.1016/S0969-2126(96)00154-2 · PubMed

Other PDB entries of the same protein (UniProt P24733 (AlphaFold model), which also has an AlphaFold model), best resolution first:

3JVT 2.1 Å, Calcium-bound Scallop Myosin Regulatory Domain (Lever Arm) with Reconstituted Complete…
1KK8 2.3 Å, Scallop myosin (S1-ADP-befx) in the actin-detached conformation
3BAS 2.3 Å, Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (C2) form
3BAT 2.3 Å, Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21)…
1B7T 2.5 Å, Myosin digested by papain
1QVI 2.54 Å, Crystal structure of scallop myosin S1 in the pre-power stroke state to 2.6 Angstrom…
3JTD 2.57 Å, Calcium-free Scallop Myosin Regulatory Domain with ELC-D19A Point Mutation
1SR6 2.75 Å, Structure of nucleotide-free scallop myosin S1
1L2O 2.8 Å, Scallop myosin S1-ADP-p-pdm in the actin-detached conformation
1SCM 2.8 Å, Structure of the regulatory domain of scallop myosin at 2.8 Å resolution
1KQM 3.0 Å, Scallop myosin S1-amppnp in the actin-detached conformation
1S5G 3.1 Å, Structure of Scallop myosin S1 reveals a novel nucleotide conformation

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